mRNA_L-elsbetiae_contig8139.17134.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8139.17134.1
Unique NamemRNA_L-elsbetiae_contig8139.17134.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: D8LB48_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB48_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 2.990e-138
Identity = 272/420 (64.76%), Postives = 294/420 (70.00%), Query Frame = 1
Query:   10 RTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDLSLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRAEEYPASEG-WKGVPTSSAEALKGQG---EGSVRQSGTSPAVSGTRAGADVVAGGAGDGAARGDAGGSGAQQPGATTRSPE 1257
            +THRHEPPVCGGDI IVSESA+ELVVDKPCTVPIHPCGSYR FNTLFYI+ RQRPDL+LRVCHRLDRLTSGLTI AKTAERA VIQ QIGSG TRKTYLARVSGDFG+RLP+DRR+ GSP XXXXXXXXXXXXXXX                              XXXXXXX                  T ELWWR+E LGEGVVK R R+  S A +  E G     A++ GV S   G +GG +E V VRVNCPIRVLDPKHGVYECHP GKEAQT +RKV YD ASDTS VECTPVHGRTHQIRLHLQW GHPIANDPCYGGELHFGNPEAKRRAEE P  EG WKGVP S++ A  G+G   E   RQ  TS A  G  AG +V  G +GD A  GD G  G   P A   +P+
Sbjct:  160 KTHRHEPPVCGGDIPIVSESAEELVVDKPCTVPIHPCGSYR-FNTLFYIMHRQRPDLTLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGSGRTRKTYLARVSGDFGQRLPLDRRKQGSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXPATDELWWRYESLGEGVVKGRLRS--SGAISGEEGGLAESSASSGGVGS---GGAGGEKEGVTVRVNCPIRVLDPKHGVYECHPSGKEAQTVVRKVGYDTASDTSVVECTPVHGRTHQIRLHLQWAGHPIANDPCYGGELHFGNPEAKRRAEENPDLEGGWKGVPGSNSTAAAGRGSMGENEARQPRTSEAADG--AGMEVD-GDSGDWAVEGDGGRGGGGAPDAVVGAPD 563          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A6H5KK40_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK40_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 5.500e-81
Identity = 179/280 (63.93%), Postives = 192/280 (68.57%), Query Frame = 1
Query:   10 RTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDLSLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQT 849
            RTHRHEPPVCGGDI IV ESA+ELVVDKPCTVPIHPCGSYR FNTLFYI+ RQRPDL+LRVCHRLDRLTSGLTI AKTAERA VIQ QIG G TRKTYLARVSGDFG+RLP+DRR+ GSP XXXXXXXXXXXXXXX                               XXXXXX                    ELWWR+E LGEGVVK R R   S+    GE G  A  + + G +   GG +GG +E V VRVNCPIRVLDPKHGVYECHP GKEAQT
Sbjct:  140 RTHRHEPPVCGGDIPIVFESAEELVVDKPCTVPIHPCGSYR-FNTLFYIMHRQRPDLTLRVCHRLDRLTSGLTIFAKTAERAGVIQKQIGLGRTRKTYLARVSGDFGQRLPLDRRKQGSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXADELWWRYESLGEGVVKGRLR---SSGAVSGEEGGLAESSVSSGRAG--GGGAGGEKEGVTVRVNCPIRVLDPKHGVYECHPSGKEAQT 405          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A2P4WXF4_9STRA (RNA pseudouridylate synthase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WXF4_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.710e-42
Identity = 113/344 (32.85%), Postives = 147/344 (42.73%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDL-SLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRAEE 1035
            +  HRHEPPV G ++ +V E  D +VV KP ++P HPCG+YR  N+L  I+Q  RPDL  L + HRLDRLTSG+ +LAK A +A  + + I   +  KTYLARV G F   L  D                                                                                        +   +VK    N  ++                               EE  + +NCP+R L  + GV+ECH  GK ++T ++ V  D    TS ++C PV GRTHQIRLHLQ  G PIANDPCYGGELHFG  E+  RA+E
Sbjct:  140 HTAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRH-NSLHTIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNATKAKALSSIIADRQASKTYLARVRGQFPEVLDSD----------------------------------------------------------------------------------------VQAKLVKQAKDNCPASVIT--------------------------FPEEGAILINCPLRCLSARDGVWECHEEGKSSETLVQLVRTDKC--TSLMKCKPVTGRTHQIRLHLQLIGFPIANDPCYGGELHFG--ESAERAKE 364          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A835ZEQ1_9STRA (HMG box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ1_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.040e-42
Identity = 125/353 (35.41%), Postives = 162/353 (45.89%), Query Frame = 1
Query:    1 MNYRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDL-SLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYEC--------HPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRAE 1032
            +++R HRHE P  GG +++V+E+ + LV +KP  +P+HPCG+YR +NTL  +L  QRP L  L +CHRLDRLTSG+ ILAK+A++A  +  ++ S   +KTYLARV G FG   P      G                    NGG            +    + A G   XXXXXXX             A                           +SA   D                          EE   V V  P+RV+  +   Y C           GK A T +R + YDAASDT+ V C P  GRTHQ+RLHL+W GHPIANDPCYGG L   +   + RAE
Sbjct:  164 LSHRVHRHELPAAGGAVEVVAETDEVLVANKPAGLPVHPCGAYR-YNTLVCVLAHQRPALPQLHICHRLDRLTSGIVILAKSAQKAAAVCARVRSASAQKTYLARVKGRFGVAFPPALCWDGQ---GDAPPAYWRKHARHDSNGGXXXXXXXXXXXXSXXXQDGAVGXXXXXXXXXXXXXXXGCKVDGCSAXXXXXXXXXXXXXXXXXXXXXXXXXXGQSALSID-------------------------TEE---VEVCAPVRVVSYRASTYACGGGGADXXXXXGKSAVTRVRALRYDAASDTTLVACAPREGRTHQLRLHLRWLGHPIANDPCYGGALFCADAAGRARAE 484          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A8K1CHM9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHM9_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 6.450e-42
Identity = 112/342 (32.75%), Postives = 144/342 (42.11%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDL-SLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRA 1029
            ++ HRHEPPV G ++ I  E  D LVV KP ++P HPCG+YR  N+L  I+ R RPDL  L + HRLDRLTSG+ ILAK+  +A  +   I   E  KTYLARV G     LP +                                                             A   +  +TAA               C    +                                          ++  + ++CP+R L  +  V+ECH  GKE+QT +R +  D    T+ VEC P+ GRTHQIRLHLQ  G PIANDPCYGGELHFG    +R A
Sbjct:  162 HKAHRHEPPVIGEEVPIAYEDDDLLVVVKPSSMPTHPCGAYRH-NSLHTIVHRMRPDLPQLNIVHRLDRLTSGIVILAKSGVKAKALSQCISDREASKTYLARVRG----HLPTE---------------------------------------------------------AFDDAFKQQLVATAAK-------------NCAASEIT---------------------------------------FPDDQTIHISCPLRCLSQRDAVWECHEEGKESQTRVRVLRID--QQTTLVECKPITGRTHQIRLHLQLLGFPIANDPCYGGELHFGESSERREA 387          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: G4YVW7_PHYSP (PseudoU_synth_2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVW7_PHYSP)

HSP 1 Score: 160 bits (405), Expect = 1.250e-40
Identity = 113/344 (32.85%), Postives = 150/344 (43.60%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDL-SLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRAEE 1035
            +  HRHEPPV G ++ +V E  D +VV KP ++P HPCG+YR  N+L  I+Q  RPDL  L + HRLDRLTSG+ +LAK A +A  +   I + +  K YLARV G F                                    P L                            PA   +  S+A +              C    +   +                             +GG          V ++CP+R L  + GV+ECH  GK ++T ++ +  D    TS +EC P+ GRTHQIRLHLQ  G PIANDPCYGGELHFG  E+  RA+E
Sbjct:  118 HTAHRHEPPVSGEEVSVVYEDDDLIVVSKPPSMPTHPCGAYRH-NSLHSIVQATRPDLPQLNIVHRLDRLTSGVVLLAKNAAKAKALSAIIANRQASKMYLARVRGQF------------------------------------PDL--------------------------LDPAVQEKLVSSAKVT-------------CPASEISFPK-----------------------------EGG----------VLISCPLRCLSARDGVWECHEEGKSSETLVKLIRTDKC--TSLMECKPITGRTHQIRLHLQLIGFPIANDPCYGGELHFG--ESTERAKE 342          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A329RSN8_9STRA (PseudoU_synth_2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A329RSN8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.510e-40
Identity = 110/348 (31.61%), Postives = 149/348 (42.82%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDL-SLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRAEEYPAS 1047
            +  HRHEPPV G ++ +V E  D +VV KP ++P HPCG+YR  N+L  I+Q  RPDL  L + HRLDRLTSG+ +LAK + +A  + + I   +  KTYLARV G F   L  +                                                                                        + + +V     N  ++                               +E  + ++CP+R L  + GV+ECH  GK ++T +R V  D    TS ++C PV GRTHQIRLHL+  G PIANDPCYGGELHFG  E+  RAEE  A+
Sbjct:  145 HAAHRHEPPVSGEEVPVVYEDDDLIVVSKPPSMPTHPCGAYRH-NSLHTIVQATRPDLPQLNIVHRLDRLTSGVMLLAKNSAKAKALSSIIADRQASKTYLARVRGQFPDLLNSE----------------------------------------------------------------------------------------IQDKLVNQAKENCPASIIT--------------------------FPDEGAILISCPLRCLSARDGVWECHEEGKPSETLVRLVRTDKC--TSLMKCKPVTGRTHQIRLHLRLIGFPIANDPCYGGELHFG--ESAERAEEIAAA 373          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A2D4BPM1_PYTIN (RNA pseudouridylate synthase, putative n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPM1_PYTIN)

HSP 1 Score: 159 bits (403), Expect = 9.530e-40
Identity = 116/342 (33.92%), Postives = 145/342 (42.40%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDL-SLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRA 1029
            ++ HRHEPPV G ++          VV KP ++P HPCG+YR  N+L  I+ R RPDL +L + HRLDRLTSG+ ILAK+  +A  +   I   E  KTYLARV G    +L    +Q                                                              R   TA             R  C    V                             +  +  GA        ++ V+CP+R L P+  V+ECH  GKE+QT +R    D A  T+ VEC P+ GRTHQIRLHLQ  G PIANDPCYGGELHFG   A RRA
Sbjct:  185 HKAHRHEPPVSGEEVXXXXXXXXXXVVAKPPSMPTHPCGAYRH-NSLHTIVSRMRPDLPTLNIVHRLDRLTSGIVILAKSGAKAKALAQCISDREASKTYLARVRGHLPLQLDDAFKQ--------------------------------------------------------------RLVETA-------------RANCAASEVSF---------------------------LQQDDDGAD-------VIHVSCPLRCLSPRDAVWECHADGKESQTRVRVRRLDGA--TTLVECKPITGRTHQIRLHLQLLGFPIANDPCYGGELHFGE-SADRRA 413          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: A0A0P1B7C7_PLAHL (P-type atpase (P-atpase) superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7C7_PLAHL)

HSP 1 Score: 161 bits (407), Expect = 8.300e-39
Identity = 108/334 (32.34%), Postives = 138/334 (41.32%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDLS-LRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFG 1005
            +  HRHEPPV G D+ +  E  D +VV KP ++P HPCG+YR  N+L  ILQ  RPDL  L + HRLDRLTSG+ +LAK A +A  + T I   +  KTYLARV G F                                   P    S    +   ++                                        +  CL   +                                          E   + ++CP+R L  + GV+ECH  GK ++T +  V  D    TS ++C PV GRTHQIRLHLQ  G PIANDPCYGGELHFG
Sbjct: 1473 HMAHRHEPPVSGEDVSVYYEDDDLIVVSKPSSMPTHPCGAYRH-NSLHTILQASRPDLPRLNIVHRLDRLTSGVVLLAKNATKAKALSTIIADRKASKTYLARVRGKF-----------------------------------PDIFDSNDQDKLINQA----------------------------------------KENCLASVIT---------------------------------------FPEANTILISCPLRCLSARDGVWECHKAGKSSETLVWLVRADKY--TSLLKCKPVTGRTHQIRLHLQLIGFPIANDPCYGGELHFG 1689          
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Match: F0W3J0_9STRA (RNA pseudouridylate synthase putative n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3J0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.090e-38
Identity = 112/339 (33.04%), Postives = 141/339 (41.59%), Query Frame = 1
Query:    7 YRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLFYILQRQRPDLS-LRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKTYLARVSGDFGRRLPVDRRQPGSPXXXXXXXXXXXXXXXXPINGGPPSLPSGGSGRSAEESGNPAPGTAAXXXXXXXPASPTRSGSTAALAVGDGTGELWWRHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGVEEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVECT----PVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGN 1008
            +RTHRHEPPV    I IV E  + LVV KPC++P HPCG+YR  N+L  IL  Q P  S L V HRLDRLTSG+ I AKTA  A  + T++   +  KTYLA V G                                        +PS                                                W       +  +K+R +    A+                 +S  K            +RV CP++ L  K+GV+ECH  GKE++T   + +     +   V C     PV GRTHQIRLHLQ  G PIANDPCYGGELHFG+
Sbjct:  126 HRTHRHEPPVSSDHIPIVYEDDELLVVSKPCSIPTHPCGAYRH-NSLHSILLHQIPVESFLHVVHRLDRLTSGIVIFAKTAAAAKKLSTEMTKRQVHKTYLAGVKG---------------------------------------FIPS-----------------------------------------------QWDEESKKQQNEIKERAKQICEASE----------------ISFSK----------KQIRVKCPLKCLSHKNGVWECHKDGKESETIFERDQLTVPVENRDVSCVLRCFPVTGRTHQIRLHLQLIGLPIANDPCYGGELHFGS 351          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8139.17134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB48_ECTSI2.990e-13864.76Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KK40_9PHAE5.500e-8163.93PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2P4WXF4_9STRA2.710e-4232.85RNA pseudouridylate synthase n=1 Tax=Phytophthora ... [more]
A0A835ZEQ1_9STRA3.040e-4235.41HMG box domain-containing protein n=1 Tax=Tribonem... [more]
A0A8K1CHM9_PYTOL6.450e-4232.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4YVW7_PHYSP1.250e-4032.85PseudoU_synth_2 domain-containing protein n=4 Tax=... [more]
A0A329RSN8_9STRA1.510e-4031.61PseudoU_synth_2 domain-containing protein n=9 Tax=... [more]
A0A2D4BPM1_PYTIN9.530e-4033.92RNA pseudouridylate synthase, putative n=2 Tax=Pyt... [more]
A0A0P1B7C7_PLAHL8.300e-3932.34P-type atpase (P-atpase) superfamily n=1 Tax=Plasm... [more]
F0W3J0_9STRA1.090e-3833.04RNA pseudouridylate synthase putative n=2 Tax=Albu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8139contigL-elsbetiae_contig8139:5046..8922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.8
Seed ortholog evalue1.3e-116
Seed eggNOG ortholog2880.D8LB48
KEGG koko:K15454
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
EC5.4.99.28
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons5
Model size1425
Cds size1425
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8139.17134.1prot_L-elsbetiae_contig8139.17134.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8139 5046..8922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.1875794-CDS-L-elsbetiae_contig8139:5045..55221622816898.1875794-CDS-L-elsbetiae_contig8139:5045..5522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 5046..5522 -
1691683896.2887065-CDS-L-elsbetiae_contig8139:5045..55221691683896.2887065-CDS-L-elsbetiae_contig8139:5045..5522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 5046..5522 -
1622816898.198025-CDS-L-elsbetiae_contig8139:6273..63721622816898.198025-CDS-L-elsbetiae_contig8139:6273..6372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 6274..6372 -
1691683896.2990296-CDS-L-elsbetiae_contig8139:6273..63721691683896.2990296-CDS-L-elsbetiae_contig8139:6273..6372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 6274..6372 -
1622816898.2082489-CDS-L-elsbetiae_contig8139:7173..77451622816898.2082489-CDS-L-elsbetiae_contig8139:7173..7745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 7174..7745 -
1691683896.3077974-CDS-L-elsbetiae_contig8139:7173..77451691683896.3077974-CDS-L-elsbetiae_contig8139:7173..7745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 7174..7745 -
1622816898.2183383-CDS-L-elsbetiae_contig8139:8166..83121622816898.2183383-CDS-L-elsbetiae_contig8139:8166..8312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 8167..8312 -
1691683896.316493-CDS-L-elsbetiae_contig8139:8166..83121691683896.316493-CDS-L-elsbetiae_contig8139:8166..8312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 8167..8312 -
1622816898.228621-CDS-L-elsbetiae_contig8139:8791..89221622816898.228621-CDS-L-elsbetiae_contig8139:8791..8922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 8792..8922 -
1691683896.3249896-CDS-L-elsbetiae_contig8139:8791..89221691683896.3249896-CDS-L-elsbetiae_contig8139:8791..8922Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8139 8792..8922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8139.17134.1

>prot_L-elsbetiae_contig8139.17134.1 ID=prot_L-elsbetiae_contig8139.17134.1|Name=mRNA_L-elsbetiae_contig8139.17134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp
MNYRTHRHEPPVCGGDIKIVSESADELVVDKPCTVPIHPCGSYRRFNTLF
YILQRQRPDLSLRVCHRLDRLTSGLTILAKTAERAVVIQTQIGSGETRKT
YLARVSGDFGRRLPVDRRQPGSPPSSAAAAAAAAAASSAPINGGPPSLPS
GGSGRSAEESGNPAPGTAAGGAGRPSPASPTRSGSTAALAVGDGTGELWW
RHECLGEGVVKDRTRNRESAARADGETGSGAGEAAAEGVSSEKGGASGGV
EEEVMVRVNCPIRVLDPKHGVYECHPLGKEAQTAIRKVEYDAASDTSTVE
CTPVHGRTHQIRLHLQWTGHPIANDPCYGGELHFGNPEAKRRAEEYPASE
GWKGVPTSSAEALKGQGEGSVRQSGTSPAVSGTRAGADVVAGGAGDGAAR
GDAGGSGAQQPGATTRSPETDGAPPPDGVVAVPKAAGDGASAAAGGVEAA
AAAAVVVPGGDAGAQRDGEGDEAFM
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mRNA from alignment at L-elsbetiae_contig8139:5046..8922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8139.17134.1 ID=mRNA_L-elsbetiae_contig8139.17134.1|Name=mRNA_L-elsbetiae_contig8139.17134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3877bp|location=Sequence derived from alignment at L-elsbetiae_contig8139:5046..8922- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTACAGAACACATCGCCACGAGCCTCCTGTCTGCGGCGGGGATAT CAAGATCGTGAGCGAATCGGCGGACGAGCTGGTGGTGGACAAGCCCTGCA CGGTGCCAATTCACCCCTGCGGCTCCTACCGGTGAGTCCTCCTCCCCCTC TGCGATGGAAGGGTCTCGCCTGAAAACACGTCTTGCGTAGGTAGATGTGT ATGTGTAGACGCTGTGGTGGGGGCGAGGGAAAAGGTTAATCAGTGCATGG GCGGTCGGCGCTACAATCTGCGCCGGTGCCGAGCAAAGAGCAGAAGCGCC TCGCGCTCTGTCGACCGTATTATGCTGGGCATGGCCGGGGGTGCGGTTTA CATGCGTGTTGGCTGATGCGGTATACACGCGTGTTGGCCGCCCCCCAATC TGCATGTCGAATTGTCGCTCTCTCACGGCGGTGTTACCTTACCGGGCGCA AAAAACGGTCGGGGCTTTTGTTCCATGGTGGCTTTTGCGTTCGGTCCAGC GGACTTGTTGCTGGTTTACGTTTCCCCTTGAAACCAGGTTGTTTTTTCCC CCCCGCGCCCGCACTGCTGCTGTTGCTGCCTCTTCTCGTGTGTGTCTGGT CTCGGCGGAGAAGGTTCAACACCCTCTTCTACATCTTGCAGCGGCAGCGG CCGGATCTGTCGCTTCGGGTGTGCCACCGCTTGGACCGTCTCACTTCCGG GCTGACCATTCTGGCAAAGACGGCGGAAAGGGCCGTTGTCATCCAGACGC AGATCGGTGAGCGTGGTCGGTCGACCCTGAACTTTTTAAGTGCATTTAAG TAAGAACAGGCGATTTTGTTGGGTTTTAACGCCGGGTCATGTCGCCCCGC TATTGAACGCCAAAGCTCAAGCTACTACATTGTAAATAGGTACGAATGTT TGGTGGTGCTTGAGGGGCAAAACATCGATTTTCGGAGATATGTATGTGCC GGCAGAGAGATGCAGGCGTTTTTTCGAATCCAGATATTACTCTAGTCGCA CAGATGCTTCTACCATCGACTTTGACACTTTCTGGGGGCTCTGCGGTTAA CTTGATCGCATCCCGCGACACTACTCCTTGTGCCCCGTTTGATTTCGCCG GCAAGCCGTTCCATCTAAATAGTCTCCCACACGAACCAATCGCTGACCCT GCCGATACCACACTGGACTGAAAAAAGGTTCGGGCGAGACGCGCAAGACC TACCTCGCCCGTGTCTCGGGAGACTTTGGTCGGCGATTGCCGGTTGACCG CCGACAACCAGGGTCGCCACCGTCCTCCGCCGCCGCCGCCGCCGCCGCCG CCGCTGCGTCTTCGGCACCCATCAACGGTGGCCCACCCTCATTGCCATCC GGAGGGAGCGGTCGCTCGGCGGAGGAAAGTGGAAACCCTGCGCCGGGGAC AGCGGCAGGGGGCGCTGGCCGACCGTCCCCGGCATCCCCGACAAGGTCCG GGAGTACAGCAGCATTGGCTGTCGGGGACGGGACCGGTGAGCTGTGGTGG AGGCACGAGTGTCTCGGAGAGGGTGTCGTCAAGGATCGAACGCGAAATCG CGAGAGCGCCGCCAGAGCCGACGGAGAAACGGGTAGCGGCGCTGGAGAGG CGGCGGCGGAGGGAGTGTCGTCAGAGAAAGGCGGTGCAAGCGGGGGAGTG GAAGAAGAGGTGATGGTGCGGGTGAACTGTCCCATCCGCGTGCTGGACCC CAAGCACGGCGTGTACGAGTGCCATCCGCTGGGGAAGGAGGCTCAGACGG TGAGTGGGTGCATGGGAGGAGGGACTGGACTTTTTTTTTTGCGGTGTTTT TTTCTTCTGCCACAAAAAAGCAGAAAAAGGTGGCTCCCGTTCAACACATC ATAACTCGCTGCTTTTTGGGGTCCCTTTGAGGCTACGTATGGGCTTCTTT GTGCGTCCTACGAGCTTCCCCCCTCCAATGTATTTATCAGCATTTTTGGG CCAAGCACCGGGGTTGGGGTTGGGGGTTGGGGGGCGGGTATTTTCTTCCG TCTAAGTACTCGCGAAAAGAAAAGCAGCGGGGTACTACTGCCTGTTGACG GAGGAAGGGTCTGTCGCCAGCGACACCCAGAACATGTAGAGGTTTTGACG GAATGCAACTCGGTTTTTTCATGTGGCAGGGGAAAGCGCGGTTCGAATTC AGCGCCTTCATATGTAGAACTCGACAGCAGTTGCTCTCGGTTCCATATGT AGAGAACAGCAGTTTTTTTTTGTGCCGTCAGTATGCGGACCCCGAGTATT TGTGTCCCCATGTGTTTTTTCAAGTTGTCCGGGGGAAGAGGCCTGCAGCT ACAACAAGCAAGGGGGGCGTTACAGTCAGCGTCTCTAGTTCCAGCCTCGT AGCCAGAAGAGGACGGCAGTGTCGAGTGTGCGCCGTTTTTCCTGGCCGCT GGTTGCGTAAAAACGAACAAGTACCACAGCAGCAGTTATATTCTAGGAGA AAAGTGCCAGGCGGGAAGAAGTCCATGACGTGCAGCGTCGTCCTTTGTTG CCTCTTGTGTGTTTGTGCGTGTATGTGTGTGTGTGTGTGTCACTCTGCAG GCGATCCGCAAGGTGGAGTACGACGCCGCGAGCGATACGTCCACCGTTGA GTGCACACCGGTGCACGGCAGGACTCACCAGATTCGCCTTCACCTGCAGG TAAGCGTCCCGCTCCTCCACCCACCGAAAGCTCCGGTGAGCAAGGTGGAA GATCCAAGACTGGCCGTTTTTCAGCGGGGCTGGTGGAATACCACAAGAGC AAGGCACGGGGTCTACGTGAACCGGAGTCACCGCACAGAGCTGCGTAAAA ACGAGCAACCAAAGAAGAACGGAGGAGATTATTTGCAGTGCTGTCAGAGC CAACCACCCGGTGCGAGAAGAACTAAGTTTTAGGCCACCATTTCGGAACA CAATTGCACAAGACCCGCCTTCCTGCGCCAAATCTCTCTTCTCTCTCTCT CTCCCTCTATCTCTCTCTCTCTCTCCGCCTGAACGTGTGTATCGCTAATA CACCCACCCAGCTTTTGTGAACCCCGCTCCCCGCCCCCTGCTCCCCCTGC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACCC CCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCAACCCCCTCCCCTACACTCTCTGTGGGTGAGGGAGGTGCT GACCCAGCTCGCTGTCCGTGACACCGAGCGTCTCCTACCGCCCCCTTCTT TACCCCCCCCCCCCCCCCCCCTTCCGCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCACCACCCGAAAATAG TGGACGGGCCACCCGATAGCCAACGACCCTTGCTACGGTGGCGAGCTGCA CTTCGGGAACCCTGAGGCGAAACGTCGCGCAGAGGAATACCCTGCCTCGG AGGGGTGGAAAGGAGTTCCTACAAGCAGTGCCGAGGCTTTGAAGGGGCAG GGCGAAGGCAGTGTGCGTCAGTCGGGAACCTCACCAGCGGTGAGCGGGAC CAGAGCCGGCGCCGATGTGGTTGCGGGTGGAGCCGGCGACGGAGCCGCGC GAGGTGACGCTGGCGGAAGTGGTGCGCAGCAGCCAGGTGCGACGACGAGA TCTCCGGAGACCGATGGTGCTCCCCCTCCTGATGGGGTTGTTGCCGTTCC GAAAGCTGCCGGGGACGGCGCTTCCGCTGCTGCTGGGGGGGTGGAAGCGG CGGCGGCGGCGGCGGTGGTTGTGCCTGGAGGTGATGCGGGTGCGCAGCGA GACGGTGAAGGCGACGAGGCTTTCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8139:5046..8922-

>mRNA_L-elsbetiae_contig8139.17134.1 ID=mRNA_L-elsbetiae_contig8139.17134.1|Name=mRNA_L-elsbetiae_contig8139.17134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig8139:5046..8922- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTACAGAACACATCGCCACGAGCCTCCTGTCTGCGGCGGGGATAT
CAAGATCGTGAGCGAATCGGCGGACGAGCTGGTGGTGGACAAGCCCTGCA
CGGTGCCAATTCACCCCTGCGGCTCCTACCGATGAATTACAGAACACATC
GCCACGAGCCTCCTGTCTGCGGCGGGGATATCAAGATCGTGAGCGAATCG
GCGGACGAGCTGGTGGTGGACAAGCCCTGCACGGTGCCAATTCACCCCTG
CGGCTCCTACCGAAGGTTCAACACCCTCTTCTACATCTTGCAGCGGCAGC
GGCCGGATCTGTCGCTTCGGGTGTGCCACCGCTTGGACCGTCTCACTTCC
GGGCTGACCATTCTGGCAAAGACGGCGGAAAGGGCCGTTGTCATCCAGAC
GCAGATCGAAGGTTCAACACCCTCTTCTACATCTTGCAGCGGCAGCGGCC
GGATCTGTCGCTTCGGGTGTGCCACCGCTTGGACCGTCTCACTTCCGGGC
TGACCATTCTGGCAAAGACGGCGGAAAGGGCCGTTGTCATCCAGACGCAG
ATCGGTTCGGGCGAGACGCGCAAGACCTACCTCGCCCGTGTCTCGGGAGA
CTTTGGTCGGCGATTGCCGGTTGACCGCCGACAACCAGGGTCGCCACCGT
CCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCGTCTTCGGCACCCATC
AACGGTGGCCCACCCTCATTGCCATCCGGAGGGAGCGGTCGCTCGGCGGA
GGAAAGTGGAAACCCTGCGCCGGGGACAGCGGCAGGGGGCGCTGGCCGAC
CGTCCCCGGCATCCCCGACAAGGTCCGGGAGTACAGCAGCATTGGCTGTC
GGGGACGGGACCGGTGAGCTGTGGTGGAGGCACGAGTGTCTCGGAGAGGG
TGTCGTCAAGGATCGAACGCGAAATCGCGAGAGCGCCGCCAGAGCCGACG
GAGAAACGGGTAGCGGCGCTGGAGAGGCGGCGGCGGAGGGAGTGTCGTCA
GAGAAAGGCGGTGCAAGCGGGGGAGTGGAAGAAGAGGTGATGGTGCGGGT
GAACTGTCCCATCCGCGTGCTGGACCCCAAGCACGGCGTGTACGAGTGCC
ATCCGCTGGGGAAGGAGGCTCAGACGGTTCGGGCGAGACGCGCAAGACCT
ACCTCGCCCGTGTCTCGGGAGACTTTGGTCGGCGATTGCCGGTTGACCGC
CGACAACCAGGGTCGCCACCGTCCTCCGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCGTCTTCGGCACCCATCAACGGTGGCCCACCCTCATTGCCATCCG
GAGGGAGCGGTCGCTCGGCGGAGGAAAGTGGAAACCCTGCGCCGGGGACA
GCGGCAGGGGGCGCTGGCCGACCGTCCCCGGCATCCCCGACAAGGTCCGG
GAGTACAGCAGCATTGGCTGTCGGGGACGGGACCGGTGAGCTGTGGTGGA
GGCACGAGTGTCTCGGAGAGGGTGTCGTCAAGGATCGAACGCGAAATCGC
GAGAGCGCCGCCAGAGCCGACGGAGAAACGGGTAGCGGCGCTGGAGAGGC
GGCGGCGGAGGGAGTGTCGTCAGAGAAAGGCGGTGCAAGCGGGGGAGTGG
AAGAAGAGGTGATGGTGCGGGTGAACTGTCCCATCCGCGTGCTGGACCCC
AAGCACGGCGTGTACGAGTGCCATCCGCTGGGGAAGGAGGCTCAGACGGC
GATCCGCAAGGTGGAGTACGACGCCGCGAGCGATACGTCCACCGTTGAGT
GCACACCGGTGCACGGCAGGACTCACCAGATTCGCCTTCACCTGCAGGCG
ATCCGCAAGGTGGAGTACGACGCCGCGAGCGATACGTCCACCGTTGAGTG
CACACCGGTGCACGGCAGGACTCACCAGATTCGCCTTCACCTGCAGTGGA
CGGGCCACCCGATAGCCAACGACCCTTGCTACGGTGGCGAGCTGCACTTC
GGGAACCCTGAGGCGAAACGTCGCGCAGAGGAATACCCTGCCTCGGAGGG
GTGGAAAGGAGTTCCTACAAGCAGTGCCGAGGCTTTGAAGGGGCAGGGCG
AAGGCAGTGTGCGTCAGTCGGGAACCTCACCAGCGGTGAGCGGGACCAGA
GCCGGCGCCGATGTGGTTGCGGGTGGAGCCGGCGACGGAGCCGCGCGAGG
TGACGCTGGCGGAAGTGGTGCGCAGCAGCCAGGTGCGACGACGAGATCTC
CGGAGACCGATGGTGCTCCCCCTCCTGATGGGGTTGTTGCCGTTCCGAAA
GCTGCCGGGGACGGCGCTTCCGCTGCTGCTGGGGGGGTGGAAGCGGCGGC
GGCGGCGGCGGTGGTTGTGCCTGGAGGTGATGCGGGTGCGCAGCGAGACG
GTGAAGGCGACGAGGCTTTCATGTGGACGGGCCACCCGATAGCCAACGAC
CCTTGCTACGGTGGCGAGCTGCACTTCGGGAACCCTGAGGCGAAACGTCG
CGCAGAGGAATACCCTGCCTCGGAGGGGTGGAAAGGAGTTCCTACAAGCA
GTGCCGAGGCTTTGAAGGGGCAGGGCGAAGGCAGTGTGCGTCAGTCGGGA
ACCTCACCAGCGGTGAGCGGGACCAGAGCCGGCGCCGATGTGGTTGCGGG
TGGAGCCGGCGACGGAGCCGCGCGAGGTGACGCTGGCGGAAGTGGTGCGC
AGCAGCCAGGTGCGACGACGAGATCTCCGGAGACCGATGGTGCTCCCCCT
CCTGATGGGGTTGTTGCCGTTCCGAAAGCTGCCGGGGACGGCGCTTCCGC
TGCTGCTGGGGGGGTGGAAGCGGCGGCGGCGGCGGCGGTGGTTGTGCCTG
GAGGTGATGCGGGTGCGCAGCGAGACGGTGAAGGCGACGAGGCTTTCATG
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