mRNA_L-elsbetiae_contig8132.17129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8132.17129.1
Unique NamemRNA_L-elsbetiae_contig8132.17129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.900e-8
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:    5 VKTCSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVN 112
            ++ C+HE CVK PT+G+ G++K EFCAPHA +GMV+
Sbjct:   14 IRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMVS 49
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-7
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:    8 KTCSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHT 121
            K C H GC K+P+FG  GSK+ EFC PHAK+ MV +H+
Sbjct:    7 KRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIVHS 44
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-7
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:   14 CSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTRR 127
            C HE C K+PT+G+ GSKK+EFC+ HA++GMVN++ +R
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.820e-7
Identity = 21/38 (55.26%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:   14 CSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTRR 127
            C H  C K+PT+G+ GSKK+EFC+ HA++GMVN++ +R
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-6
Identity = 21/38 (55.26%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:    2 MVKTCSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNI 115
            + K C H GC+K+P++G DGSKK+EFCA H+++GMV++
Sbjct:    5 VCKRCGHLGCMKRPSYGTDGSKKREFCAQHSQQGMVSM 42
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.390e-6
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 2 
Query:    8 KTCSHEGCVKQPTFGIDGSKKKEFCAPHAKEGM 106
            + C H GC K+P+FG DGSKK+EFCA HA +GM
Sbjct:    7 RRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
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BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D7FMW7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 4.410e-6
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:    2 MVKTCSHE-GCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTRR 127
            M K C++  GC KQ  FG+ GSKK+EFCA HA +GMV+IH++R
Sbjct:    1 MGKKCTYPAGCPKQALFGVPGSKKREFCALHAIQGMVDIHSKR 43
[Close]
BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 9.740e-6
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:   14 CSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTRR 127
            C   GC K P++G  GSKK EFCA HAK+GMVN+ +RR
Sbjct:  109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRR 146
[Close]
BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D7G6R3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.110e-5
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 2 
Query:   14 CSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTR 124
            C   GC  QPTFG  GSKK EFC+PHAK  MV++H +
Sbjct:  517 CQEPGCTTQPTFGNKGSKKPEFCSPHAKPNMVDVHNK 553
[Close]
BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.640e-5
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:    8 KTCSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTRR 127
            + C   GC  +P++GIDGSKK EFC+ H+K GM N+  +R
Sbjct:   29 RCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKR 68
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8132.17129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5LBM3_9PHAE3.900e-858.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW94_9PHAE1.090e-757.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT00_9PHAE1.160e-757.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI4.820e-755.26EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G985_ECTSI1.750e-655.26EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB1_ECTSI3.390e-663.64EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FMW7_ECTSI4.410e-658.14EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FIE1_ECTSI9.740e-660.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G6R3_ECTSI1.110e-559.46EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FY22_ECTSI1.640e-550.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8132contigL-elsbetiae_contig8132:474..1939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1102
Cds size1101
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8132.17129.1prot_L-elsbetiae_contig8132.17129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8132 475..1939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.7148979-UTR-L-elsbetiae_contig8132:473..4741622816897.7148979-UTR-L-elsbetiae_contig8132:473..474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8132 474..474 +
1691683895.9502661-UTR-L-elsbetiae_contig8132:473..4741691683895.9502661-UTR-L-elsbetiae_contig8132:473..474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8132 474..474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.7251294-CDS-L-elsbetiae_contig8132:474..14891622816897.7251294-CDS-L-elsbetiae_contig8132:474..1489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8132 475..1489 +
1691683895.9631531-CDS-L-elsbetiae_contig8132:474..14891691683895.9631531-CDS-L-elsbetiae_contig8132:474..1489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8132 475..1489 +
1622816897.7353065-CDS-L-elsbetiae_contig8132:1853..19391622816897.7353065-CDS-L-elsbetiae_contig8132:1853..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8132 1854..1939 +
1691683895.9724207-CDS-L-elsbetiae_contig8132:1853..19391691683895.9724207-CDS-L-elsbetiae_contig8132:1853..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8132 1854..1939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8132.17129.1

>prot_L-elsbetiae_contig8132.17129.1 ID=prot_L-elsbetiae_contig8132.17129.1|Name=mRNA_L-elsbetiae_contig8132.17129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=367bp
MVKTCSHEGCVKQPTFGIDGSKKKEFCAPHAKEGMVNIHTRRCQHEGCMK
GQFFGKPGTKEEYCSKHAKDDMVNLKSRKCGHDGCTKRPSYGVAGTKKPE
FCSGHATDGMMNVTYKKRCASVDCMTTASYGMPGTKNSEFCARHAKDGMV
NVVTKRCSELDCTTSSSFGVVGSKKPEFCARHAKDGMVPTWGKSCAQPNC
TTTPSFGVEGSKKVEFCRMHAQHGMVNLNTRRCAAPGCRTCPSFGEIGKS
PKFCAKHKHSEVGLVNVLTRMCAGKWCMAIPVYGVEGTRTRKFCFQHSEK
GMVNMNNPNLPPKVPTPTPILALPDESLSDPEASAEMKGGGETRPNTKSF
LLQTQQAEAEERRQLGL
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mRNA from alignment at L-elsbetiae_contig8132:474..1939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8132.17129.1 ID=mRNA_L-elsbetiae_contig8132.17129.1|Name=mRNA_L-elsbetiae_contig8132.17129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1466bp|location=Sequence derived from alignment at L-elsbetiae_contig8132:474..1939+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGTTAAGACCTGCAGCCACGAAGGATGTGTCAAGCAGCCAACTTTCG
GTATAGATGGCAGCAAGAAGAAGGAGTTCTGCGCGCCTCACGCGAAAGAA
GGTATGGTCAACATCCACACCAGGAGGTGTCAACACGAAGGGTGTATGAA
GGGCCAGTTCTTTGGCAAGCCCGGTACCAAGGAGGAGTACTGCAGTAAAC
ACGCTAAGGATGATATGGTGAACCTCAAAAGTAGAAAGTGCGGTCACGAT
GGGTGTACCAAGAGGCCGAGCTATGGTGTTGCCGGTACCAAGAAGCCAGA
GTTCTGTTCAGGCCATGCGACGGACGGGATGATGAACGTCACTTACAAGA
AGAGGTGTGCAAGTGTTGATTGCATGACCACAGCTTCCTATGGAATGCCA
GGCACCAAAAATTCGGAGTTCTGCGCTCGCCACGCGAAGGATGGGATGGT
GAACGTCGTCACCAAAAGATGCTCCGAGCTAGATTGCACGACGAGTTCAT
CGTTTGGCGTTGTGGGCAGCAAAAAGCCGGAGTTCTGCGCTCGACATGCG
AAAGATGGGATGGTCCCCACATGGGGCAAGAGCTGCGCCCAACCAAACTG
CACTACAACACCTAGCTTCGGCGTGGAAGGGAGCAAGAAAGTGGAGTTCT
GCCGTATGCATGCCCAACATGGGATGGTTAACCTCAATACAAGGCGCTGC
GCCGCGCCAGGTTGCAGAACATGCCCATCGTTCGGCGAAATAGGGAAATC
CCCCAAGTTCTGCGCCAAGCACAAGCATTCGGAGGTAGGGCTTGTGAACG
TCCTCACCAGGATGTGCGCTGGTAAATGGTGCATGGCGATTCCTGTTTAC
GGCGTTGAGGGTACTCGAACCAGGAAGTTCTGCTTTCAACACTCGGAGAA
GGGCATGGTGAACATGAATAACCCCAACCTTCCTCCGAAGGTCCCTACCC
CTACCCCGATACTGGCTCTCCCTGACGAGTCGCTTTCGGATCCAGAAGCC
TCGGCAGAAATGAAAGGTGAGATTTACCTGCGTTCAAAAGCAACCATCCT
GGGAGCTGCTATGTATGTAGTTTGCAGCCAGGGGATGTCCAGCCCTTCAC
GGGCGGCCCTTGTTTTACTGAACCGTAGTGCCCCGTCTGCGCGCGATGAA
CTGGTACAGTTGGTATATTTGCGTCCATTCTCGGGACTGTAACGTAAAGG
AATTGGGCAGAGATGAGGACTTGCTCGTCACGGTGAGGTAGAGAAGAGCA
AAGGCGCTGGTTATTACTTCGTACTGCTGCATATAATGTCAGTTTAGTGC
CCTGGTCTCATGTCTTCGAAACGCGTTCTTACATTTGCCGAGTTTGACGT
GGTTGCTGACGGAACACCCTCTTAACTCAGGCGGCGGCGAGACAAGGCCC
AACACCAAGAGCTTTTTGTTGCAGACGCAGCAGGCGGAGGCGGAGGAGCG
GCGCCAACTGGGGCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8132:474..1939+

>mRNA_L-elsbetiae_contig8132.17129.1 ID=mRNA_L-elsbetiae_contig8132.17129.1|Name=mRNA_L-elsbetiae_contig8132.17129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2202bp|location=Sequence derived from alignment at L-elsbetiae_contig8132:474..1939+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTAAGACCTGCAGCCACGAAGGATGTGTCAAGCAGCCAACTTTCGG
TATAGATGGCAGCAAGAAGAAGGAGTTCTGCGCGCCTCACGCGAAAGAAG
GTATGGTCAACATCCACACCAGGAGGTGTCAACACGAAGGGTGTATGAAG
GGCCAGTTCTTTGGCAAGCCCGGTACCAAGGAGGAGTACTGCAGTAAACA
CGCTAAGGATGATATGGTGAACCTCAAAAGTAGAAAGTGCGGTCACGATG
GGTGTACCAAGAGGCCGAGCTATGGTGTTGCCGGTACCAAGAAGCCAGAG
TTCTGTTCAGGCCATGCGACGGACGGGATGATGAACGTCACTTACAAGAA
GAGGTGTGCAAGTGTTGATTGCATGACCACAGCTTCCTATGGAATGCCAG
GCACCAAAAATTCGGAGTTCTGCGCTCGCCACGCGAAGGATGGGATGGTG
AACGTCGTCACCAAAAGATGCTCCGAGCTAGATTGCACGACGAGTTCATC
GTTTGGCGTTGTGGGCAGCAAAAAGCCGGAGTTCTGCGCTCGACATGCGA
AAGATGGGATGGTCCCCACATGGGGCAAGAGCTGCGCCCAACCAAACTGC
ACTACAACACCTAGCTTCGGCGTGGAAGGGAGCAAGAAAGTGGAGTTCTG
CCGTATGCATGCCCAACATGGGATGGTTAACCTCAATACAAGGCGCTGCG
CCGCGCCAGGTTGCAGAACATGCCCATCGTTCGGCGAAATAGGGAAATCC
CCCAAGTTCTGCGCCAAGCACAAGCATTCGGAGGTAGGGCTTGTGAACGT
CCTCACCAGGATGTGCGCTGGTAAATGGTGCATGGCGATTCCTGTTTACG
GCGTTGAGGGTACTCGAACCAGGAAGTTCTGCTTTCAACACTCGGAGAAG
GGCATGGTGAACATGAATAACCCCAACCTTCCTCCGAAGGTCCCTACCCC
TACCCCGATACTGGCTCTCCCTGACGAGTCGCTTTCGGATCCAGAAGCCT
CGGCAGAAATGAAAGATGGTTAAGACCTGCAGCCACGAAGGATGTGTCAA
GCAGCCAACTTTCGGTATAGATGGCAGCAAGAAGAAGGAGTTCTGCGCGC
CTCACGCGAAAGAAGGTATGGTCAACATCCACACCAGGAGGTGTCAACAC
GAAGGGTGTATGAAGGGCCAGTTCTTTGGCAAGCCCGGTACCAAGGAGGA
GTACTGCAGTAAACACGCTAAGGATGATATGGTGAACCTCAAAAGTAGAA
AGTGCGGTCACGATGGGTGTACCAAGAGGCCGAGCTATGGTGTTGCCGGT
ACCAAGAAGCCAGAGTTCTGTTCAGGCCATGCGACGGACGGGATGATGAA
CGTCACTTACAAGAAGAGGTGTGCAAGTGTTGATTGCATGACCACAGCTT
CCTATGGAATGCCAGGCACCAAAAATTCGGAGTTCTGCGCTCGCCACGCG
AAGGATGGGATGGTGAACGTCGTCACCAAAAGATGCTCCGAGCTAGATTG
CACGACGAGTTCATCGTTTGGCGTTGTGGGCAGCAAAAAGCCGGAGTTCT
GCGCTCGACATGCGAAAGATGGGATGGTCCCCACATGGGGCAAGAGCTGC
GCCCAACCAAACTGCACTACAACACCTAGCTTCGGCGTGGAAGGGAGCAA
GAAAGTGGAGTTCTGCCGTATGCATGCCCAACATGGGATGGTTAACCTCA
ATACAAGGCGCTGCGCCGCGCCAGGTTGCAGAACATGCCCATCGTTCGGC
GAAATAGGGAAATCCCCCAAGTTCTGCGCCAAGCACAAGCATTCGGAGGT
AGGGCTTGTGAACGTCCTCACCAGGATGTGCGCTGGTAAATGGTGCATGG
CGATTCCTGTTTACGGCGTTGAGGGTACTCGAACCAGGAAGTTCTGCTTT
CAACACTCGGAGAAGGGCATGGTGAACATGAATAACCCCAACCTTCCTCC
GAAGGTCCCTACCCCTACCCCGATACTGGCTCTCCCTGACGAGTCGCTTT
CGGATCCAGAAGCCTCGGCAGAAATGAAAGGCGGCGGCGAGACAAGGCCC
AACACCAAGAGCTTTTTGTTGCAGACGCAGCAGGCGGAGGCGGAGGAGCG
GCGCCAACTGGGGCTAGCGGCGGCGAGACAAGGCCCAACACCAAGAGCTT
TTTGTTGCAGACGCAGCAGGCGGAGGCGGAGGAGCGGCGCCAACTGGGGC
TA
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