mRNA_L-elsbetiae_contig8130.17128.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8130.17128.1
Unique NamemRNA_L-elsbetiae_contig8130.17128.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 547 bits (1409), Expect = 4.200e-177
Identity = 277/323 (85.76%), Postives = 296/323 (91.64%), Query Frame = 1 
Query:    1 QVTALTSLFAGVVLITLFECLRGRRTRAWRSLYRQRHSLRYRKTNNRLKRIDVKPYPRGFLRWIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGANDNEGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIRQEALDVSPTIRPSCFGPKVDAIQHYGTRLAEINQKLRPKQEAKLEAAKNVERFRRRELRNLGASLENMALYFVEQLDRG 969
            QVTA TSL AG VL+TLFECLRGRR R  RSLYRQRHSLR+RK N RLKRI VKPYPRGFLRWI STWRVSD+EFYEQVGMDGYV LRFIKLCKRLCAFAAFFGMVFLLPIYEQG ND+EGASRLSMANL++GGE LWSGVVFAYLFT YFLYSLRKEF AFSDLRNDWLAGGDVAR+ QT+YTVRVERIPRAFRSP ILQKFFSTLFPGQIHSATVCLGLKDLRALTL+RAKCLQALERAIIRQE L +SP +RPS FGPK DA+++YG RLAEINQKLRPKQEAKLE   N+ERFRR+ELRN+GASLENMA+YFV+QL RG
Sbjct:   58 QVTAFTSLAAGAVLLTLFECLRGRRNRGCRSLYRQRHSLRFRKKNVRLKRIAVKPYPRGFLRWISSTWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAFAAFFGMVFLLPIYEQGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFFAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLKDLRALTLKRAKCLQALERAIIRQEVLKLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLE---NIERFRRKELRNMGASLENMAMYFVDQLARG 377
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A835ZH71_9STRA (Late exocytosis, associated with Golgi transport-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH71_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.370e-48
Identity = 85/161 (52.80%), Postives = 105/161 (65.22%), Query Frame = 1 
Query:  115 LRYRKTNNRLKRIDVKPYPRGFLRWIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGA-NDNEGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPA 594
            LRYRK N RL+ +DV  YPRGFL W    WR+SD EF  QVG+DGY+ +RFI+LC+RLC  AA  GM  L PIY  G    +     L+M NL  G E+LW+ V FA++F  Y L+ LRKE L F+ LRNDWLA GD+    Q +Y+V +E IP AFR  A
Sbjct:   32 LRYRKKNPRLRVVDVPKYPRGFLAWTLQCWRMSDQEFLAQVGLDGYMVIRFIRLCRRLCWCAALLGMCILTPIYVTGGVYAHSSVFFLTMTNLPAGSESLWATVAFAWVFMLYLLHELRKEHLKFTALRNDWLANGDLPSQRQAAYSVMIESIPEAFRCVA 192
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A7R9UFD0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.470e-30
Identity = 93/276 (33.70%), Postives = 134/276 (48.55%), Query Frame = 1 
Query:    7 TALTSLFAGVVLITLFEC---LRGRRTRAWRSLYRQRHSLRYRKTNNRLKRIDVKP------------YPRGFLRWIPSTWRVS-DSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGA-NDNEGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIRQEALDVSPTIRPSCFGP 783
            T   S   G +L  LFE    L   RT A+   Y     L Y       + +DV P             P     W+    +V  + +  + VG+D +V LRF+++  R+ +F AF+G+V L+P+Y+ GA N ++   + +MAN+ QG + LW   + AY FT Y LY L +E+  F  LR+ +   G      Q  YTV VE IP   R+ A L K+F+ LFPGQ+HSA VCL  + L A+   R +    LE+  +   A    P   P  F P
Sbjct:   18 TLQVSSLLGSILYMLFEAGRQLNNGRTSAYGGNYVSFLKLPYGNDRKVPRYVDVDPDTGAGTGPDLPERPSFLGGWLQPVIQVDGEQQLLDLVGLDAFVLLRFLRMQCRIFSFVAFWGVVVLIPLYDSGAKNVDDTFYQTTMANMAQGSKNLWVVTLCAYFFTLYALYLLSEEYRDFVQLRHQFFVHGSRETAPQARYTVLVEMIPPHLRTNAALYKYFNELFPGQVHSAIVCLNTRKLAAIMRRREQVASLLEKYTLLDNA---DPDGAPHMFKP 290
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A7S2K3N6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3N6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 4.030e-28
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = 1 
Query:  229 EQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGANDNEGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPG-QIHSATVCLGLKDLRALTLERAKCLQALERA 723
            E  G+D Y  LR+I++CKR+ A +A +G++ L P +  G  D  G  RLSMAN+ Q    LW   VF +L T Y +Y L +E   + +LR D+L  GD   + Q  Y++ VE+IP   RS   L  +F+ L PG ++HSA+V + + +L  L L R + ++ LE+A
Sbjct:   12 EVCGLDAYFFLRYIRVCKRIMAVSALWGILILWPTFYTGDGDMSGFYRLSMANVLQSHWRLWVPTVFIWLQTLYVVYLLDEELRHYVELRMDFLGRGDKDVDPQQRYSIIVEKIPIELRSDQALFDYFNKLIPGGKVHSASVVMNIGELERLVLRRLRVVRRLEKA 177
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.450e-28
Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:  736 EALDVSPTIRPSCFGPKVDAIQHYGTRLAEINQKLRPKQEAKLEAAKNVERFRRRELRNLGASLENMALYFVEQLDRG 969
            E L +SP +RPS FGPK DA+++YG RLAEINQKLRPKQEAKLEAAKN+ERFRR+ELRN+GASLENMA+YFV+QL RG
Sbjct:    3 EVLRLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAKNIERFRRKELRNMGASLENMAMYFVDQLARG 80
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A8J9X4I7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X4I7_PHATR)

HSP 1 Score: 120 bits (302), Expect = 3.870e-27
Identity = 70/208 (33.65%), Postives = 116/208 (55.77%), Query Frame = 1 
Query:  181 LRWIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGANDN---EGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIRQEALDVSPTI-----RPSCFG 780
            L WI   + V  S+     G+DGY  LR+I++  R+ A + F+  + L+PIY  G++     EG   LS AN+ + G  +W   +FAYLF+ +  + +++E+  F DLR D+LA G++  + Q  +++ +E IP   RS   L+++F  +FPG++HSA+V L L +L   ++   +  + LE++I    A    PT      R SC G
Sbjct:  126 LDWIGPVFGVPWSKVRRIAGLDGYFFLRYIRMNVRITAVSTFWFFLILVPIYATGSSKEHSAEGWYHLSAANIPRDGWRMWIPCLFAYLFSAFVCFVVKQEYRHFLDLRQDFLARGNMHVDPQHHHSLEIENIPYELRSDRALKEYFEKMFPGRVHSASVVLNLPELEDASVRCMRTCRRLEKSIAFLHATGNRPTHVVGRGRISCLG 333
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: B7FTE9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTE9_PHATC)

HSP 1 Score: 120 bits (301), Expect = 1.720e-26
Identity = 69/208 (33.17%), Postives = 116/208 (55.77%), Query Frame = 1 
Query:  181 LRWIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGANDN---EGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIRQEALDVSPTI-----RPSCFG 780
            L W+   + V  S+     G+DGY  LR+I++  R+ A + F+  + L+PIY  G++     EG   LS AN+ + G  +W   +FAYLF+ +  + +++E+  F DLR D+LA G++  + Q  +++ +E IP   RS   L+++F  +FPG++HSA+V L L +L   ++   +  + LE++I    A    PT      R SC G
Sbjct:  126 LDWLGPVFGVPWSKVRRIAGLDGYFFLRYIRMNVRITAVSTFWFFLILVPIYATGSSKEHSAEGWYHLSAANIPRDGWRMWIPCLFAYLFSAFVCFVVKQEYRHFLDLRQDFLARGNMHVDPQHHHSLEIENIPYELRSDRALKEYFEKMFPGRVHSASVVLNLPELEDASVRCMRTCRRLEKSIAFLHATGSRPTHVVGRGRISCLG 333
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A836CNV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.110e-16
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = 1 
Query:  583 RSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERA--IIRQEALDVSPTIRPS----CFGPKVDAIQHYGTRLAEINQKLRPKQEAKLEAAKNVERFRRRELRNLGASLENMALYFVEQL 960
            +SPA+L +FF+TLFPGQ+HSA++CL L DL  +   R   +Q L +A  +  ++ +D+   I       C G    A + YG R+AE++ KL P+ +  +EAA  VE  +R EL  + A+  NMA +F  QL
Sbjct:   30 KSPAVLAEFFNTLFPGQVHSASICLALSDLDKMLAARLLAVQRLSKASIVFMRKGVDLEVKIGRGPCGLCHGRTELAREFYGARVAELSHKLEPRLKQIIEAAATVEAVKREELVQMRATQANMAFFFSRQL 161
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: UPI0002C349DD (CSC1-like protein HYP1 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C349DD)

HSP 1 Score: 85.5 bits (210), Expect = 1.070e-14
Identity = 63/230 (27.39%), Postives = 97/230 (42.17%), Query Frame = 1 
Query:  187 WIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLPIYEQGAN--------DNEGASRLSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIRQEALDVSPTIRPSCFGPKVDAIQHYGTRLAEINQKLRPKQ 852
            W+   W+ S+ +F     +D  V +R      R+  FAA  G+  LLPI   G           N+     S++N++ G   LW     AY+F+ +  Y L  E+   S  R           N Q +  VR   +P    S  I++ FF+  +     S T+      L+ LT +  K  + L R  I+ E        R   FG KVDA+ HYG +L ++   +R +Q
Sbjct:   71 WVRRAWQPSEDQFLSATSLDAVVFMRIFVFSLRVFGFAAVIGVFVLLPINFLGTQLEVDFSDLTNKSLDSFSISNVDDGSNWLWVHFCAAYIFSAFVCYLLYNEYSYISSRRIAHFYSSKPQPN-QFTVLVRGIPVPSGSSSSEIIENFFTEYYSSTYLSHTMVRRTSKLQRLTKDADKVYRTLAR--IKSEKDPQQRFKRDGLFGRKVDALDHYGKKLDDLEDTVRLEQ 297
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BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Match: A0A0G4IMU1_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMU1_PLABS)

HSP 1 Score: 85.5 bits (210), Expect = 1.110e-14
Identity = 74/234 (31.62%), Postives = 110/234 (47.01%), Query Frame = 1 
Query:  181 LRWIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFAAFFGMVFLLP---IYEQGANDNEGASR-LSMANLEQGGEALWSGVVFAYLFTFYFLYSLRKEFLAFSDLRN--DWLAGGD-----VARNAQTSYTVRVERIPRAFRSPAILQKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIR--QEALDVSPTIRPSCF-GPKVDAIQHYGTRLAEINQKL 840
            L WI + + +S+ +    +G+D  V LRF ++        A  G+V +LP   I   GA  +    R LSM++L +     W  +V AYLFT Y  Y LR+E LA+ DLR+      GG+       R  Q S  +R  RIP   ++ A L  + + LFP    SA V      L  L  E     + LERA  +  +    V PT+R   F   +VDAI  +  R+ ++  ++
Sbjct:   76 LEWIRAMYALSERDLVRVIGLDAVVFLRFQRMGMYFFGPLAVVGLVVILPVNAIAPSGAALHATTFRDLSMSHLPEKSPLFWVHLVCAYLFTGYLFYLLRREALAYHDLRHRCHLSCGGEQEGDGAPRPDQLSVALR--RIPSHLQNEANLHNYLARLFPDAFASAVVVRDRSVLIRLCKELTGARRHLERACAQFARTGRRVRPTLRTGWFLSSRVDAIDLWTQRIEDLGDQI 307
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8130.17128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV8_ECTSI4.200e-17785.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZH71_9STRA6.370e-4852.80Late exocytosis, associated with Golgi transport-d... [more]
A0A7R9UFD0_9STRA1.470e-3033.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2K3N6_9STRA4.030e-2839.16Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5KIL5_9PHAE9.450e-2878.21ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A8J9X4I7_PHATR3.870e-2733.65Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FTE9_PHATC1.720e-2633.17Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A836CNV2_9STRA2.110e-1639.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0002C349DD1.070e-1427.39CSC1-like protein HYP1 n=1 Tax=Fragaria vesca subs... [more]
A0A0G4IMU1_PLABS1.110e-1431.62Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8130contigL-elsbetiae_contig8130:1368..8703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score548.5
Seed ortholog evalue2.1e-153
Seed eggNOG ortholog2880.D7FMV8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size972
Cds size972
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8130.17128.1prot_L-elsbetiae_contig8130.17128.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8130 1368..8703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.60723-CDS-L-elsbetiae_contig8130:1367..14631622816897.60723-CDS-L-elsbetiae_contig8130:1367..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 1368..1463 -
1691683895.8351305-CDS-L-elsbetiae_contig8130:1367..14631691683895.8351305-CDS-L-elsbetiae_contig8130:1367..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 1368..1463 -
1622816897.6184175-CDS-L-elsbetiae_contig8130:2098..22361622816897.6184175-CDS-L-elsbetiae_contig8130:2098..2236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 2099..2236 -
1691683895.8476872-CDS-L-elsbetiae_contig8130:2098..22361691683895.8476872-CDS-L-elsbetiae_contig8130:2098..2236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 2099..2236 -
1622816897.6289515-CDS-L-elsbetiae_contig8130:2955..30601622816897.6289515-CDS-L-elsbetiae_contig8130:2955..3060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 2956..3060 -
1691683895.8591685-CDS-L-elsbetiae_contig8130:2955..30601691683895.8591685-CDS-L-elsbetiae_contig8130:2955..3060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 2956..3060 -
1622816897.6389613-CDS-L-elsbetiae_contig8130:3972..41231622816897.6389613-CDS-L-elsbetiae_contig8130:3972..4123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 3973..4123 -
1691683895.877871-CDS-L-elsbetiae_contig8130:3972..41231691683895.877871-CDS-L-elsbetiae_contig8130:3972..4123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 3973..4123 -
1622816897.6488636-CDS-L-elsbetiae_contig8130:5575..57471622816897.6488636-CDS-L-elsbetiae_contig8130:5575..5747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 5576..5747 -
1691683895.8943636-CDS-L-elsbetiae_contig8130:5575..57471691683895.8943636-CDS-L-elsbetiae_contig8130:5575..5747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 5576..5747 -
1622816897.6604664-CDS-L-elsbetiae_contig8130:6378..64541622816897.6604664-CDS-L-elsbetiae_contig8130:6378..6454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 6379..6454 -
1691683895.9028745-CDS-L-elsbetiae_contig8130:6378..64541691683895.9028745-CDS-L-elsbetiae_contig8130:6378..6454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 6379..6454 -
1622816897.672877-CDS-L-elsbetiae_contig8130:7458..75761622816897.672877-CDS-L-elsbetiae_contig8130:7458..7576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 7459..7576 -
1691683895.9115198-CDS-L-elsbetiae_contig8130:7458..75761691683895.9115198-CDS-L-elsbetiae_contig8130:7458..7576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 7459..7576 -
1622816897.685137-CDS-L-elsbetiae_contig8130:8587..87031622816897.685137-CDS-L-elsbetiae_contig8130:8587..8703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 8588..8703 -
1691683895.9292471-CDS-L-elsbetiae_contig8130:8587..87031691683895.9292471-CDS-L-elsbetiae_contig8130:8587..8703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8130 8588..8703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8130.17128.1

>prot_L-elsbetiae_contig8130.17128.1 ID=prot_L-elsbetiae_contig8130.17128.1|Name=mRNA_L-elsbetiae_contig8130.17128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=324bp
QVTALTSLFAGVVLITLFECLRGRRTRAWRSLYRQRHSLRYRKTNNRLKR
IDVKPYPRGFLRWIPSTWRVSDSEFYEQVGMDGYVALRFIKLCKRLCAFA
AFFGMVFLLPIYEQGANDNEGASRLSMANLEQGGEALWSGVVFAYLFTFY
FLYSLRKEFLAFSDLRNDWLAGGDVARNAQTSYTVRVERIPRAFRSPAIL
QKFFSTLFPGQIHSATVCLGLKDLRALTLERAKCLQALERAIIRQEALDV
SPTIRPSCFGPKVDAIQHYGTRLAEINQKLRPKQEAKLEAAKNVERFRRR
ELRNLGASLENMALYFVEQLDRG*
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mRNA from alignment at L-elsbetiae_contig8130:1368..8703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8130.17128.1 ID=mRNA_L-elsbetiae_contig8130.17128.1|Name=mRNA_L-elsbetiae_contig8130.17128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7336bp|location=Sequence derived from alignment at L-elsbetiae_contig8130:1368..8703- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAACTGCCCTCACGAGCCTTTTCGCCGGAGTGGTCCTGATCACGCT
GTTCGAGTGCCTGCGGGGCAGGAGAACCCGGGCGTGGAGGTCCCTGTACC
GCCAGAGACATAGCCTGTGGGTTCCACCTGCGTTGCCGCGGTCTGCGGGC
CCCATTTCCTGCCGGCTTCATATCGGTCGCTTTTCTGGTGGTTTCACACT
CTCTTTTATACCATACATATTATGCGTGTGTTAAAACATACGTACACATT
GTCCATGGAGTACGTATGTATGTGGGTGGTGCTGCCGTTTCTTTGAACTA
TTCATGTTTTTTTTTTTTTTTTTTTTACACATTTTTTTCCCGTGCTCAAT
GGGCTGGCTCCCTGTCACGAGGACATCTTGCCAGAGTACTGACCCATGGT
CACACAGATATTTTTTGTAGGCCGTTTTTTTCTGGTGTTTTGCGTTTTTT
TTCGCTCTGCTCGCCCCTGTTTTTTCTCCTTCTTTTCGCCACCAGCCACT
AGTTTGCTGTTTACTACTGCCACGCCCTGACCCCGGCGCCCCATGTAGCC
TGAGAGCCAGACGCGACTCCCTTGGATGCTGCCGTGTGTGCGTGTGTGCC
TCTCGCATTTCCTGGTATCCACCCCAGTACACTCTCCCCGTCCCGGACTT
GTCTCTGTCTCTGGTCTCTTGGCCGCGTCTCCTCTAGGCCCGTCCCCTCG
CAAGGGGCCTCCCGGAATGCAGGGAAGGCACCACACACACACACACACAC
ACACCCCTAAACTCTGGGCTTATCGGCGTTTTGTTTTGTATAGGAATTAG
TGTGTATGGCGTCGACAGGACCCCACCGACCCTCGGATTTATTGGAGGAG
GGGTGGTGGTAACTAGCGTCACACGTACGACCATACTAAATCCTATAAAA
TAAGACCCCCCCCCCTCCCCCCTTGATTCTGGGCTTATCGATGTTTTGTA
GCTGTGGTGCCAGCCCTGCAATCCGCGAGGCCCCTTGCCTCTCGGCGACG
GGGGCACCGCAGACGAAGGAAACACTAATTGAATACCCCCCCACACACAC
ACCCCGTTCTCCGCACACACACTCGTCGACTGCAATATCGCCTACCTCTC
ACGTTTTGCATCGATCTGCCTTTGCAGGCGCTACCGGAAGACCAACAACC
GGCTGAAGAGGATAGACGTTAAGCCTTACCCCCGGGGCTTCTTGCGGTGG
ATACCCTCCACGTGGCGTGTGTCGGACTCGGAGTTCTACGAACAGGTGCG
TTGCGGCACACACAACGTGCGGGTGCTCTCTGCGAGGAGTACAAACACGC
ACACACGCGTGCACGCAGCAGCTGCAAATGTAAACGTCTACGCCATCCTA
TTTATTAAGGCGGACCACTGCTGCCACTGCTGTTGTATTCTTGCGGGTAA
ATTTACTCGGAAGAACTTAAACCCTTTTTGCCCGCGGCTCAATTCTCCCG
CAGGTTGTTTTTGTTGTTTTGGCGGCAACGGGGAGGGAGCACACACGGCG
CCCCGACTGAAACAAACATCTCGAATATGGCGGTGTGAACCTGTAAACTT
TTCGTACTTCGAAGTATTCATTAGTATTCGCAACAGAGAGACCCAGGTTT
ACAAAACAAATTCCGTGAACCACCACACGGGGGGGGGGGGGGGCTTACCC
CGCGGTAGGTGCATATATGTAAGGTGGCGGTGGTGTGTCTTTGGTGAGAG
GGTTACTGCGCACGTACGTCGCGTTTTGCGGGAGGACTTCTCCGCCACAA
CACATTCATAGGGTTCGGAAGAACCCCCCGCCAGCACCGACAAAAGAGAC
TTGCAGGAGAGCTTTCTTTTGCTTCCGGATGCAAGCCCTATACCTGTAGA
TGCTGCAGTACCCCTCGCAGGGGAGGGAGCATGGTGAAGACACGAGTGTT
TATGTATTGGCACACGTGCTTGTAATTTTTATGACACAGCAGCGGTGCAT
TACTGGCTCGATCCACTCTTAAATAGCGCGCCCACTCTGACCAACCTTCA
AACTAATTTCCACCTGCGGCGTTTGGAGGCGTTATTGCCAGCGATTCCGG
CCGGGCACGACAAAACTGACCGGTGACAGACAGAGACACACACACACACA
CACACACACACACACACACCACCACCTACCACCTACCTCTGCTGTGTTTG
CTCTCGTCTGTGGTGCAACTAATGGCACCAATTATATTCTCATTCTCTTT
TTTTATTTATTTCTGTTTTCGATGCATTGCGTCACCCCCGTCACGCCAGG
TGGGGATGGACGGGTACGTCGCGCTGCGATTCATCAAGCTGTGCAAACGC
CTGTGCGCCTTTGCGGCTTTTTTTGGTGAGTTCTTGGTTTTGACTACTGT
TTTATCTACATAGTTCGTATAAATAAGATACTCTTCCGTTTTGTTCCTCG
TGTTCCTTTCCGCTCTCGCAGACACACACAAAAAAAAACTCCATATCATA
TGAAGCCGCATATGCCAAAACCCCCCTCCGGGGTCTTGTCCCTTGTGCCC
CCGATGGCATTCCGTGGGATTTGTGTTCGTACGCGACCTCCGGGCGATCG
CCGCGGCCGAACTTGGTTCAAGCAGTAATTACACAGCTGTATCTACCAAC
ACAAAACTCAAACCCCAAGCCTTTTTTTTCGTGGCATGACACATGCGTTC
ATGTAAAATAGCTTGTCCCCAACCAAAGCGTGTGTGTGTGTGTGTGTGTG
TGCCCGCCCCCCTGCCTGGTTTTACCTAAGGGGCTCCGTATAATCACTCA
CTCGAACCTCTCTCTTTCTCACGAAAAAAAAACTTATATTTATGTTTGCC
TGTAGCGTGTGCGTGTGTGTGTGTGTGTGTGCCCGGCCCCCTGCCTGGTT
TTACCCAAGGGGCTCCGTATAATCACTCACTCAAACCTCTCTCCTTCCTT
TCACGAAAAAAAAACTTATATTTATGTTTGCCTGTATGTATGTATACATA
CTGTAGGCATGGTGTTCCTGCTGCCGATCTACGAGCAGGGCGCCAACGAC
AACGAGGGGGCTTCCCGGCTGTCGATGGCCAACCTGGAGCAGGGCGGAGA
GGCTTTGTGGTCCGGGGTGGTGTTCGCCTACCTCTTCACCTTCTACTTCC
TCTACAGCCTGAGGAAAGAGTTTCTAGCGTGAGTCTTTTTGTATGTACGA
CACTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGTTACACTACATTATA
TTATTATTATTTCGTTTGCCCTCCGACAATTGCAGACAGATCCAACCAAT
TCCCTTCACCATACATGCGTCATACTTGATGCTTAAAAACATACACATAT
AGTTATCTACCGAGCGCTAAATTTCAACATGCATTGTAAGACACACGGCG
CTAGTTTTTTTGTTGTTGTTTTTTGTTGTTGTCTTCTCTCTCTGGAAGTA
TGCATGCAGGGGTGCCTCTGCTGTCCACCTGCAAAGTCAGCAGTGGCATA
TGGAAACGTATGTGTGTACATCCTCGCTTAGGCCTCCTGAGGTTGTTTTT
TGGTGCGGATTAGTTTTGCTTGGGACGCACTCACTGCTACTACTACTGCT
GCTGTGCCCCTCTCTCTGCCTGCTCTGCTATACACACATGGCGTGCTTTT
TTCGCTCTTGGAAACCGGGTGACTTTCTGCGTGCCTGCCTCCGCCTCCGA
GCCCGAGGGCAGCAACAAAGAACGATGTACACTCGAAGTACGTTTATATG
TATGAAGCAATAATATGTAGTCTAGACGTTCTTATATATATAGCTAGACG
TTTTTTTTTAATTAATTAATTAATTGTTTGGTTTTGGGCAGGAAATTATG
TGGAAATGATGCGCCAGTCATTTTTTACTTCTATTTATTTCCAGGCCGGG
ATCGGCGAGGCAAAAGGTGTCACAATTTTTTCTGACTTTTTTCGGTTGTT
CAACGTCAATGAACGCGAACTCTTTTGAGACAAGGTCGGTAGCAGCAGTG
CTGACAGACAGTCTTACCTACGAGGAAGCCGGGTGGTTTGGTTCACTGTT
GTTGCTGTTGGGTAAAAACGCCGCTGTGCGTTTCCATGAAAAATACCGGT
TTCCGATTTTTTTTTTCGGGCACCGACATCTGTACACACATGATGTGTGG
GTACGGGTCCTGGTTGTGTGGAGGGGGCCCAAATCTATATTTCGTACTTC
CATTTTTTTTTTTTTCATCTAATCCATCCGCTCCGAAGCCCGTAGCGTGT
GTCTGATTGACCGAAAGGTACAGGTGTACCATAGAGTGCTGGGCGTTCAG
AATTGATGGAACCAGCCACGCACACGCACACACACACACACACACACACA
CACACACACACACACACACACACACACAGACAGACACACACGCACACACA
GCTCACACACACGCACGCACGCACGCACGCACGCACACAAACACACAGAC
CTTCTGATGGCTTGAGCGCTTTTGCGACCACGGGCCGGTACTGTTTTGGA
GACATACGGCTAAATAATGTGAGAACAACAACACAACAGTAGTAGCCCCG
CTTGACATTCTTCAGTCCGAACGAAACCCATGTGCACGCACGCGTATGTA
GTAATTTGTGCTTCCGTCCACCCCACCCAGCTTCTCGGACCTGCGCAACG
ACTGGCTCGCCGGGGGGGACGTGGCCCGGAACGCGCAGACCTCCTACACG
GTGCGCGTGGAGCGCATCCCCAGGGCGTTCCGGAGCCCGGCCATCCTCCA
GAAGTTTTTCAGCACGCTCTTCCCCGGGCAGGTGCGCTTTTTTGTTTTCA
TTTTTTTTTTGTCCTTTTTTTTGTCTTTTTTCTATCTTTCTTGGTTTTCT
GCCACATATCATATGTGCTTCTACATGGATACAATAAAAGGGTCAGTAAC
AATAATAAGGTCAGCGGTCTTTGTAATACAACCCTGCTCTTCCGGGCGTT
AGGAGTTGCGGGCAATTGGCGTTTGTGTGGGCCACTCTGAGGCAGTCCAT
GAAGTCGATGTGCTTCGTAAAGCGGAAATTATAAGGACCCGTAGTACGTA
GGAGCTTATTAATATTTGCTCATTCCAAACGGTCTACGCTTGATACCATC
TTGGATCAAAATCAAAGCTAGATCCGCAAAAAATCGACCTCTGGACTTTC
TCAGATTATTCGAAAAATGTGCGTACGACGCAATGCTTCCCCTCCCCCCC
CCTATGGCCCGGGTTTTATCGCACACACACGACATCAGCCGCTGCTCTTC
TGTAGCGTTACCATGTGAACCCTCGGTACAGCAGTACCAGGTATTCCTTT
TTTTCTTCGGGTTTCTGCCCTTGTGCCTTTGATGCTCTCGGCCTTCAAGG
ACGACAAGATGGATACCGCTGTTGCGATACGCATGCTCGCCCCCCCCCCC
CAAGAAGACCAGGACCCGTTCGCGTCACCCCCCGCAGCTTGCCTCCTCCG
CTCGCACACTTTGGTTTCCAAACACCTCATGCCGTTTTGCTCCTTTGCTG
CGTTTGCGGGCATGGGCTGGGTGGGTGTTCGCGATGCGCCCCATGCTTCG
TCTGGCCGAACGGAACGGAACGGAACGGAACGGAACGGAACGGAACGGAA
CCGCGATGAAAACTGCGGTTGAAAATCTGCGCAACTGCATACTACATGCA
TACATGCATACATGCATACATTCATACATCCGCAAAAAAATAGATCCACA
GCGCGACGGTCTGCCTGGGGCTCAAGGACCTGAGAGCCCTGACGCTTGAA
CGCGCCAAGTGCCTGCAGGCTCTGGAGAGGGCCATCATCCGCCAAGAGGT
GTGTGTGTGTGTGTGTGTGTATATGGCAGCCGCAGCCGCAGCAGCAGCAG
CGGCAGCAGCGGCAACAGCAGCAGCAGCAGTGGTTGTTTTTTTGGCTTCC
GTTTTGTACTTGGCTTTTGTTGTCCCTGCTTCAGCTGTTGTGATATGTTG
TGCCACCTCCAGGTGTATGTATGTACTGTACTACCACCTCTTTGCATTGG
CCTTGTGCCACCTTTTGCTCTCGGCGTGCATACTGTAGGTCCTTGTTGTC
TCTCTTGTCCCGCCTTATTTGCCCGCCCCCACCTCAGCCTCTGCTCGCGC
GCGCGCGGGGGCGCCCGTTTGTTATCTTCGTCTCGTCTCTTGCCTTTTGT
GCTTTTTTTTTTTTGTGCCAGTCATCTTGCCTCGCTTCTCGCGTGCACAT
ATGTAGCGCGCCGATGATGTCCGATTGAGGGGACTGTCAAGCCTGCACAC
CCGGCCAGCTATTACGGGCGCGTTTCTTGGTCTCCCCTTTTTGCTGCCAT
CTGTCCATGCTTCTACACGCATGTATCCTTTGGATTGTGCCCAGCGCTTG
GACTTCCTCGCCTCTGGCTTAAATCTGCTTCAATAATTACAATAACCGGG
CTGGGGGACGCACGCAAGCACGCACGCACGCAACCCCCCCCTTCCCCCCA
TTATCCGCCCCCCCCCCTCTCCTTGTTTTCCGTTCGTGCCTTGGTGGTGA
TGCCTACACACAAACAGGCCTTGGACGTCTCTCCGACGATACGGCCGTCC
TGCTTCGGACCCAAGGTGGATGCGATACAGCACTACGGTACGCGGCTGGC
GGAGATCAACCAGAAGCTGAGGCCGAAGCAGGAGGCGAAGCTAGAGGCCG
CCAAGGTGTGGGGTTAGGGTTAGGTTTCGTGTTGTCGGGTCGGCCCCACC
AGCTCGTTCCATTGGACCGTTTCGCAAAGAATTCCTGTCTATATAGGAAA
TAATACACAGGGGTTCCGTGACCCCAACCCTAACCCTTACCCCAAACCGG
CCCCCCATCAGCCGTTTCCATACTTTACTATCCCACATGATTTCTTCCAG
TAAAACCTGCGAAAACTATTGACTGGTTCCATCTCTCGCCCCGTTGCGGT
CTCTCCCATTTCCTTTTTTTGTGAAACAATCTTCATATTGTACGAAACCG
TCAGCGGTCTATTTACGTGCGCGGCGTCCGACCGATACCTGTGAATGAAA
AAAAAAGGCTGTTCCAGGGGAGGAGGCTTTGTTGTCACAGCCGCGCTACA
CTAACCTTCCCTCGCCGCCCCGGACTATACAGTAGTTTAGTAGTCAGTGG
TATGTATGTATACAAAACCTGCAATCCGTCCATGGTTCTCTGGTCGCGCT
GTAACAATGTATGTATGTACGTAAATTTTCTTCGAAGCATGTAAATTACA
CATATGTTTTATTTCCTTTTTATGTGTGTGTGTGTGTGTATGTTTGTGTG
GTTGTGTTTGTGTTTGTGCTCGCTTGTGTTTGGTGAGCAGAACGTTGAGC
GCTTCAGGAGGAGGGAGCTGAGGAACCTCGGGGCAAGCCTAGAGAACATG
GCCCTGTACTTTGTCGAGCAGCTCGACAGAGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8130:1368..8703-

>mRNA_L-elsbetiae_contig8130.17128.1 ID=mRNA_L-elsbetiae_contig8130.17128.1|Name=mRNA_L-elsbetiae_contig8130.17128.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1944bp|location=Sequence derived from alignment at L-elsbetiae_contig8130:1368..8703- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTAACTGCCCTCACGAGCCTTTTCGCCGGAGTGGTCCTGATCACGCT
GTTCGAGTGCCTGCGGGGCAGGAGAACCCGGGCGTGGAGGTCCCTGTACC
GCCAGAGACATAGCCTCAGGTAACTGCCCTCACGAGCCTTTTCGCCGGAG
TGGTCCTGATCACGCTGTTCGAGTGCCTGCGGGGCAGGAGAACCCGGGCG
TGGAGGTCCCTGTACCGCCAGAGACATAGCCTGCGCTACCGGAAGACCAA
CAACCGGCTGAAGAGGATAGACGTTAAGCCTTACCCCCGGGGCTTCTTGC
GGTGGATACCCTCCACGTGGCGTGTGTCGGACTCGGAGTTCTACGAACAG
GCGCTACCGGAAGACCAACAACCGGCTGAAGAGGATAGACGTTAAGCCTT
ACCCCCGGGGCTTCTTGCGGTGGATACCCTCCACGTGGCGTGTGTCGGAC
TCGGAGTTCTACGAACAGGTGGGGATGGACGGGTACGTCGCGCTGCGATT
CATCAAGCTGTGCAAACGCCTGTGCGCCTTTGCGGCTTTTTTTGGTGGGG
ATGGACGGGTACGTCGCGCTGCGATTCATCAAGCTGTGCAAACGCCTGTG
CGCCTTTGCGGCTTTTTTTGGCATGGTGTTCCTGCTGCCGATCTACGAGC
AGGGCGCCAACGACAACGAGGGGGCTTCCCGGCTGTCGATGGCCAACCTG
GAGCAGGGCGGAGAGGCTTTGTGGTCCGGGGTGGTGTTCGCCTACCTCTT
CACCTTCTACTTCCTCTACAGCCTGAGGAAAGAGTTTCTAGCGCATGGTG
TTCCTGCTGCCGATCTACGAGCAGGGCGCCAACGACAACGAGGGGGCTTC
CCGGCTGTCGATGGCCAACCTGGAGCAGGGCGGAGAGGCTTTGTGGTCCG
GGGTGGTGTTCGCCTACCTCTTCACCTTCTACTTCCTCTACAGCCTGAGG
AAAGAGTTTCTAGCCTTCTCGGACCTGCGCAACGACTGGCTCGCCGGGGG
GGACGTGGCCCGGAACGCGCAGACCTCCTACACGGTGCGCGTGGAGCGCA
TCCCCAGGGCGTTCCGGAGCCCGGCCATCCTCCAGAAGTTTTTCAGCACG
CTCTTCCCCGGGCAGCTTCTCGGACCTGCGCAACGACTGGCTCGCCGGGG
GGGACGTGGCCCGGAACGCGCAGACCTCCTACACGGTGCGCGTGGAGCGC
ATCCCCAGGGCGTTCCGGAGCCCGGCCATCCTCCAGAAGTTTTTCAGCAC
GCTCTTCCCCGGGCAGATCCACAGCGCGACGGTCTGCCTGGGGCTCAAGG
ACCTGAGAGCCCTGACGCTTGAACGCGCCAAGTGCCTGCAGGCTCTGGAG
AGGGCCATCATCCGCCAAGAGATCCACAGCGCGACGGTCTGCCTGGGGCT
CAAGGACCTGAGAGCCCTGACGCTTGAACGCGCCAAGTGCCTGCAGGCTC
TGGAGAGGGCCATCATCCGCCAAGAGGCCTTGGACGTCTCTCCGACGATA
CGGCCGTCCTGCTTCGGACCCAAGGTGGATGCGATACAGCACTACGGTAC
GCGGCTGGCGGAGATCAACCAGAAGCTGAGGCCGAAGCAGGAGGCGAAGC
TAGAGGCCGCCAAGGCCTTGGACGTCTCTCCGACGATACGGCCGTCCTGC
TTCGGACCCAAGGTGGATGCGATACAGCACTACGGTACGCGGCTGGCGGA
GATCAACCAGAAGCTGAGGCCGAAGCAGGAGGCGAAGCTAGAGGCCGCCA
AGAACGTTGAGCGCTTCAGGAGGAGGGAGCTGAGGAACCTCGGGGCAAGC
CTAGAGAACATGGCCCTGTACTTTGTCGAGCAGCTCGACAGAGGGTGAAA
CGTTGAGCGCTTCAGGAGGAGGGAGCTGAGGAACCTCGGGGCAAGCCTAG
AGAACATGGCCCTGTACTTTGTCGAGCAGCTCGACAGAGGGTGA
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