mRNA_L-elsbetiae_contig8121.17120.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig8121.17120.1
Unique Name	mRNA_L-elsbetiae_contig8121.17120.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8121.17120.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8121.17120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8121	contig	L-elsbetiae_contig8121:7899..8789 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	850
Cds size	717
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8121.17120.1	prot_L-elsbetiae_contig8121.17120.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig8121 7934..8691 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816896.8663685-UTR-L-elsbetiae_contig8121:7898..7933	1622816896.8663685-UTR-L-elsbetiae_contig8121:7898..7933	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8121 7899..7933 +
1691683895.2780638-UTR-L-elsbetiae_contig8121:7898..7933	1691683895.2780638-UTR-L-elsbetiae_contig8121:7898..7933	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8121 7899..7933 +
1622816896.8981884-UTR-L-elsbetiae_contig8121:8691..8789	1622816896.8981884-UTR-L-elsbetiae_contig8121:8691..8789	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8121 8692..8789 +
1691683895.309664-UTR-L-elsbetiae_contig8121:8691..8789	1691683895.309664-UTR-L-elsbetiae_contig8121:8691..8789	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8121 8692..8789 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816896.877249-CDS-L-elsbetiae_contig8121:7933..8449	1622816896.877249-CDS-L-elsbetiae_contig8121:7933..8449	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8121 7934..8449 +
1691683895.2882824-CDS-L-elsbetiae_contig8121:7933..8449	1691683895.2882824-CDS-L-elsbetiae_contig8121:7933..8449	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8121 7934..8449 +
1622816896.887539-CDS-L-elsbetiae_contig8121:8490..8691	1622816896.887539-CDS-L-elsbetiae_contig8121:8490..8691	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8121 8491..8691 +
1691683895.2986-CDS-L-elsbetiae_contig8121:8490..8691	1691683895.2986-CDS-L-elsbetiae_contig8121:8490..8691	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8121 8491..8691 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig8121:7899..8789+
coding sequence from alignment at L-elsbetiae_contig8121:7899..8789+

protein sequence of mRNA_L-elsbetiae_contig8121.17120.1

>prot_L-elsbetiae_contig8121.17120.1 ID=prot_L-elsbetiae_contig8121.17120.1|Name=mRNA_L-elsbetiae_contig8121.17120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
MSLPLVIGMHVHRSSLSSWRGPKGVISYTPMHLQVLSTVYTVGDTRYHTP
WTDSQSSTPPQQEERQCRTRWLWKNLVEGYPKICRLVLAPSSLRSNKALK
FGPGGVVFCVTYGTLPVAFHPWHLVIFPVAPFSMLSSLRSLPCHSTTNLR
RSALQYAERGRDHKAPTSLLLFVLSVFLSLRRERYTKYRIKYRTETCSLF
YRRGEHITELSQTHHGAPERSASPPSHLARGANRDSSR*

mRNA from alignment at L-elsbetiae_contig8121:7899..8789+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig8121.17120.1 ID=mRNA_L-elsbetiae_contig8121.17120.1|Name=mRNA_L-elsbetiae_contig8121.17120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=891bp|location=Sequence derived from alignment at L-elsbetiae_contig8121:7899..8789+ (Laminarionema elsbetiae ELsaHSoW15)
CACCCGTCCTGTCCCACAGGGAACCCGTCACATCGATGAGTTTGCCGCTC
GTAATCGGGATGCATGTACATAGATCGTCTCTGTCTTCATGGCGAGGACC
AAAAGGTGTCATATCCTACACACCGATGCATCTACAGGTGCTTTCAACGG
TATATACCGTAGGTGACACAAGATACCACACTCCCTGGACAGATTCTCAA
AGCTCGACTCCTCCTCAGCAAGAAGAGCGCCAGTGCCGAACGAGGTGGCT
TTGGAAAAATTTAGTCGAGGGCTATCCTAAAATATGTCGTTTGGTGCTGG
CACCTTCTTCGTTACGGAGTAATAAAGCTCTAAAATTTGGTCCAGGGGGT
GTGGTATTTTGTGTCACCTACGGTACGCTGCCCGTTGCCTTTCATCCGTG
GCATCTGGTGATCTTTCCCGTCGCACCCTTCTCTATGTTGTCCTCTTTGC
GATCCCTTCCTTGTCACTCCACGACCAATTTGAGGCGGAGCGCTCTACAA
TATGCAGAGAGGGGGAGGGATCACAAAGCTCCAACTTCTCTGTTACTATT
CAGCGCGGGCAATGCTGAAACTGAAGGGTAGCTTCCAGACCTGTGTTGTC
CGTGTTTTTGAGTCTTAGGCGAGAGAGATACACAAAATATCGCATCAAAT
ATCGTACCGAAACATGTTCGCTGTTCTACAGGAGGGGTGAACACATCACG
GAACTCTCTCAAACGCACCACGGCGCCCCAGAACGCTCTGCGTCACCCCC
GTCACATCTGGCACGCGGTGCAAACCGAGATTCTTCCCGGTGAGACGGGC
ACAAAAAGTCGATTCATTCTACTACTGTTTACCATACACACTACACACAT
ATCGCACAAACCGGGCGTGTAAAAGGATGAGGGACTGTAAC

Coding sequence (CDS) from alignment at L-elsbetiae_contig8121:7899..8789+

>mRNA_L-elsbetiae_contig8121.17120.1 ID=mRNA_L-elsbetiae_contig8121.17120.1|Name=mRNA_L-elsbetiae_contig8121.17120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig8121:7899..8789+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTTTGCCGCTCGTAATCGGGATGCATGTACATAGATCGTCTCTGTC
TTCATGGCGAGGACCAAAAGGTGTCATATCCTACACACCGATGCATCTAC
AGGTGCTTTCAACGGTATATACCGTAGGTGACACAAGATACCACACTCCC
TGGACAGATTCTCAAAGCTCGACTCCTCCTCAGCAAGAAGAGCGCCAGTG
CCGAACGAGGTGGCTTTGGAAAAATTTAGTCGAGGGCTATCCTAAAATAT
GTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATAAAGCTCTAAAA
TTTGGTCCAGGGGGTGTGGTATTTTGTGTCACCTACGGTACGCTGCCCGT
TGCCTTTCATCCGTGGCATCTGGTGATCTTTCCCGTCGCACCCTTCTCTA
TGTTGTCCTCTTTGCGATCCCTTCCTTGTCACTCCACGACCAATTTGAGG
CGGAGCGCTCTACAATATGCAGAGAGGGGGAGGGATCACAAAGCTCCAAC
TTCTCTGTTACTATTCATGAGTTTGCCGCTCGTAATCGGGATGCATGTAC
ATAGATCGTCTCTGTCTTCATGGCGAGGACCAAAAGGTGTCATATCCTAC
ACACCGATGCATCTACAGGTGCTTTCAACGGTATATACCGTAGGTGACAC
AAGATACCACACTCCCTGGACAGATTCTCAAAGCTCGACTCCTCCTCAGC
AAGAAGAGCGCCAGTGCCGAACGAGGTGGCTTTGGAAAAATTTAGTCGAG
GGCTATCCTAAAATATGTCGTTTGGTGCTGGCACCTTCTTCGTTACGGAG
TAATAAAGCTCTAAAATTTGGTCCAGGGGGTGTGGTATTTTGTGTCACCT
ACGGTACGCTGCCCGTTGCCTTTCATCCGTGGCATCTGGTGATCTTTCCC
GTCGCACCCTTCTCTATGTTGTCCTCTTTGCGATCCCTTCCTTGTCACTC
CACGACCAATTTGAGGCGGAGCGCTCTACAATATGCAGAGAGGGGGAGGG
ATCACAAAGCTCCAACTTCTCTGTTACTATTCGTGTTGTCCGTGTTTTTG
AGTCTTAGGCGAGAGAGATACACAAAATATCGCATCAAATATCGTACCGA
AACATGTTCGCTGTTCTACAGGAGGGGTGAACACATCACGGAACTCTCTC
AAACGCACCACGGCGCCCCAGAACGCTCTGCGTCACCCCCGTCACATCTG
GCACGCGGTGCAAACCGAGATTCTTCCCGGTGAGTGTTGTCCGTGTTTTT
GAGTCTTAGGCGAGAGAGATACACAAAATATCGCATCAAATATCGTACCG
AAACATGTTCGCTGTTCTACAGGAGGGGTGAACACATCACGGAACTCTCT
CAAACGCACCACGGCGCCCCAGAACGCTCTGCGTCACCCCCGTCACATCT
GGCACGCGGTGCAAACCGAGATTCTTCCCGGTGA