mRNA_L-elsbetiae_contig812.17116.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig812.17116.1
Unique NamemRNA_L-elsbetiae_contig812.17116.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig812.17116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig812contigL-elsbetiae_contig812:23624..23984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.451366-CDS-L-elsbetiae_contig812:23623..239261622816896.451366-CDS-L-elsbetiae_contig812:23623..23926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 23624..23926 +
1691683894.9846692-CDS-L-elsbetiae_contig812:23623..239261691683894.9846692-CDS-L-elsbetiae_contig812:23623..23926Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 23624..23926 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.4640298-UTR-L-elsbetiae_contig812:23926..239841622816896.4640298-UTR-L-elsbetiae_contig812:23926..23984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig812 23927..23984 +
1691683894.9948096-UTR-L-elsbetiae_contig812:23926..239841691683894.9948096-UTR-L-elsbetiae_contig812:23926..23984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig812 23927..23984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig812.17116.1prot_L-elsbetiae_contig812.17116.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig812 23624..23926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig812.17116.1

>prot_L-elsbetiae_contig812.17116.1 ID=prot_L-elsbetiae_contig812.17116.1|Name=mRNA_L-elsbetiae_contig812.17116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
CCCCRHCCRCFWWGIYAGLFRRRRVCFARCRFRSGCGNRVAGGCGSNRGG
DLPGEPRKLDRSCGPKDVEGEGSHAFEAQAYRTRHGCKLTAYEGVAITVV
*
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mRNA from alignment at L-elsbetiae_contig812:23624..23984+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig812.17116.1 ID=mRNA_L-elsbetiae_contig812.17116.1|Name=mRNA_L-elsbetiae_contig812.17116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=361bp|location=Sequence derived from alignment at L-elsbetiae_contig812:23624..23984+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTGCCGCCACTGCTGCCGGTGCTTCTGGTGGGGCATCTATGC
CGGCCTTTTCCGTCGGCGTCGGGTATGCTTCGCTCGATGCCGATTTCGAT
CTGGGTGCGGGAATCGGGTCGCTGGAGGATGCGGGTCAAACAGAGGAGGA
GACCTTCCTGGCGAGCCTCGTAAACTCGATAGATCCTGCGGACCCAAAGA
CGTTGAGGGTGAGGGGAGCCATGCTTTCGAGGCTCAAGCGTATAGGACGC
GCCACGGCTGCAAGCTGACGGCGTATGAGGGCGTTGCGATCACGGTAGTA
TGAGCGTTCACAAGTAGAAGTGGCACGGCATATGAATATGTGCGTCGTGG
CTACGAATAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig812:23624..23984+

>mRNA_L-elsbetiae_contig812.17116.1 ID=mRNA_L-elsbetiae_contig812.17116.1|Name=mRNA_L-elsbetiae_contig812.17116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig812:23624..23984+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTGCTGCTGCCGCCACTGCTGCCGGTGCTTCTGGTGGGGCATCTATGC
CGGCCTTTTCCGTCGGCGTCGGGTATGCTTCGCTCGATGCCGATTTCGAT
CTGGGTGCGGGAATCGGGTCGCTGGAGGATGCGGGTCAAACAGAGGAGGA
GACCTTCCTGGCGAGCCTCGTAAACTCGATAGATCCTGCGGACCCAAAGA
CGTTGAGGGTGAGGGGAGCCATGCTTTCGAGGCTCAAGCGTATAGGACGC
GCCACGGCTGCAAGCTGACGGCGTATGAGGGCGTTGCGATCACGGTAGTA
TGATGCTGCTGCTGCCGCCACTGCTGCCGGTGCTTCTGGTGGGGCATCTA
TGCCGGCCTTTTCCGTCGGCGTCGGGTATGCTTCGCTCGATGCCGATTTC
GATCTGGGTGCGGGAATCGGGTCGCTGGAGGATGCGGGTCAAACAGAGGA
GGAGACCTTCCTGGCGAGCCTCGTAAACTCGATAGATCCTGCGGACCCAA
AGACGTTGAGGGTGAGGGGAGCCATGCTTTCGAGGCTCAAGCGTATAGGA
CGCGCCACGGCTGCAAGCTGACGGCGTATGAGGGCGTTGCGATCACGGTA
GTATGA
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