mRNA_L-elsbetiae_contig812.17114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig812.17114.1
Unique NamemRNA_L-elsbetiae_contig812.17114.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig812.17114.1 vs. uniprot
Match: D8LBM0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM0_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 4.610e-59
Identity = 88/111 (79.28%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:    1 LTCESPLCNKNPSFGYRDQTRRRFCKRHAGPGMVNVYYRYCDVDGDRCPERASFEADGKRRCLQHREPGMRPRNKICQVEGGGCTRQSSFGMQGGKPVLCTVHKEPGMVQV 333
            LTCESPLCNK PSF +R QTRRRFCKRHA PGM NVYY+YCD D  RCPERAS+E+ GK RCLQH EP MRPRN ICQVEGGGC RQSSFG +GGKPVLCT+HK  GMVQV
Sbjct:   47 LTCESPLCNKTPSFAHRGQTRRRFCKRHAWPGMQNVYYKYCDADSGRCPERASYESAGKLRCLQHCEPEMRPRNNICQVEGGGCDRQSSFGAKGGKPVLCTLHKGAGMVQV 157
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BLAST of mRNA_L-elsbetiae_contig812.17114.1 vs. uniprot
Match: A0A6H5JA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA62_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.020e-56
Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 1 
Query:    1 LTCESPLCNKNPSFGYRDQTRRRFCKRHAGPGMVNVYYRYCDVDGDRCPERASFEADGKRRCLQHREPGMRPRNKICQVEGGGCTRQSSFGMQGGKPVLCTVHKEPGMVQV 333
            LTCESPLCNK  SF +R QTRRR CKRHA PGM NVYY+YCD D  RCPERAS+E+ GK RCL+H EP MRPRN ICQVEGGGC RQSSFG++GGKP+LCT+HK  GMVQV
Sbjct:  118 LTCESPLCNKTSSFAHRGQTRRRLCKRHAWPGMQNVYYKYCDADSGRCPERASYESAGKLRCLEHCEPEMRPRNNICQVEGGGCDRQSSFGVKGGKPILCTLHKGAGMVQV 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig812.17114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBM0_ECTSI4.610e-5979.28EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JA62_9PHAE3.020e-5675.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig812contigL-elsbetiae_contig812:20060..20638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-27_003460.1
Exons2
Model size364
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.672396-CDS-L-elsbetiae_contig812:20059..201611622816896.672396-CDS-L-elsbetiae_contig812:20059..20161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 20060..20161 +
1691683895.1372185-CDS-L-elsbetiae_contig812:20059..201611691683895.1372185-CDS-L-elsbetiae_contig812:20059..20161Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 20060..20161 +
1622816896.6868186-CDS-L-elsbetiae_contig812:20377..206381622816896.6868186-CDS-L-elsbetiae_contig812:20377..20638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 20378..20638 +
1691683895.1475267-CDS-L-elsbetiae_contig812:20377..206381691683895.1475267-CDS-L-elsbetiae_contig812:20377..20638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 20378..20638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig812.17114.1prot_L-elsbetiae_contig812.17114.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig812 20060..20638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig812.17114.1

>prot_L-elsbetiae_contig812.17114.1 ID=prot_L-elsbetiae_contig812.17114.1|Name=mRNA_L-elsbetiae_contig812.17114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
LTCESPLCNKNPSFGYRDQTRRRFCKRHAGPGMVNVYYRYCDVDGDRCPE
RASFEADGKRRCLQHREPGMRPRNKICQVEGGGCTRQSSFGMQGGKPVLC
TVHKEPGMVQVCGGVVHYCC*
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mRNA from alignment at L-elsbetiae_contig812:20060..20638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig812.17114.1 ID=mRNA_L-elsbetiae_contig812.17114.1|Name=mRNA_L-elsbetiae_contig812.17114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=579bp|location=Sequence derived from alignment at L-elsbetiae_contig812:20060..20638+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACCTGCGAGAGTCCGCTCTGCAACAAGAACCCGTCGTTTGGTTACAG
GGATCAGACGCGGCGCCGGTTCTGCAAGCGCCACGCGGGGCCGGGAATGG
TGGTGAGACGCGAACGACACGGACAGTAGCGGGGCGCAATCGACCAACGT
TACTCTGTACAGCGTTCGAAGGGCTCGCTCTCGTAGCCAAGTTCGGTTGG
ACTCGACAACGGCGAGGGAGGTACCCGTATCTATCTCGTGCACACGCCGC
GTGTTCCTTCAATCGTGTTTGATTCGAACCGTCCTCGTTTTGTCGTGTCG
ATACCCCCCCCCCCTCAGAACGTGTACTACCGCTACTGTGACGTAGACGG
GGACCGGTGCCCAGAACGTGCGTCCTTCGAGGCGGACGGAAAGCGGCGTT
GCCTGCAGCATCGCGAGCCGGGCATGCGGCCGAGGAATAAGATCTGCCAA
GTGGAAGGCGGTGGATGCACCCGGCAGTCCTCCTTCGGGATGCAGGGGGG
CAAGCCTGTCCTCTGCACGGTGCATAAAGAACCCGGCATGGTGCAGGTGT
GCGGCGGTGTGGTCCACTACTGTTGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig812:20060..20638+

>mRNA_L-elsbetiae_contig812.17114.1 ID=mRNA_L-elsbetiae_contig812.17114.1|Name=mRNA_L-elsbetiae_contig812.17114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig812:20060..20638+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACCTGCGAGAGTCCGCTCTGCAACAAGAACCCGTCGTTTGGTTACAG
GGATCAGACGCGGCGCCGGTTCTGCAAGCGCCACGCGGGGCCGGGAATGG
TGCTGACCTGCGAGAGTCCGCTCTGCAACAAGAACCCGTCGTTTGGTTAC
AGGGATCAGACGCGGCGCCGGTTCTGCAAGCGCCACGCGGGGCCGGGAAT
GGTGAACGTGTACTACCGCTACTGTGACGTAGACGGGGACCGGTGCCCAG
AACGTGCGTCCTTCGAGGCGGACGGAAAGCGGCGTTGCCTGCAGCATCGC
GAGCCGGGCATGCGGCCGAGGAATAAGATCTGCCAAGTGGAAGGCGGTGG
ATGCACCCGGCAGTCCTCCTTCGGGATGCAGGGGGGCAAGCCTGTCCTCT
GCACGGTGCATAAAGAACCCGGCATGGTGCAGGTGTGCGGCGGTGTGGTC
CACTACTGTTGTTGAAACGTGTACTACCGCTACTGTGACGTAGACGGGGA
CCGGTGCCCAGAACGTGCGTCCTTCGAGGCGGACGGAAAGCGGCGTTGCC
TGCAGCATCGCGAGCCGGGCATGCGGCCGAGGAATAAGATCTGCCAAGTG
GAAGGCGGTGGATGCACCCGGCAGTCCTCCTTCGGGATGCAGGGGGGCAA
GCCTGTCCTCTGCACGGTGCATAAAGAACCCGGCATGGTGCAGGTGTGCG
GCGGTGTGGTCCACTACTGTTGTTGA
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