mRNA_L-elsbetiae_contig812.17111.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig812.17111.1
Unique NamemRNA_L-elsbetiae_contig812.17111.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig812.17111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig812contigL-elsbetiae_contig812:2823..4665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1843
Cds size1383
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig812.17111.1prot_L-elsbetiae_contig812.17111.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig812 2828..4210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.3699443-UTR-L-elsbetiae_contig812:2822..28271622816896.3699443-UTR-L-elsbetiae_contig812:2822..2827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig812 2823..2827 +
1691683894.9358792-UTR-L-elsbetiae_contig812:2822..28271691683894.9358792-UTR-L-elsbetiae_contig812:2822..2827Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig812 2823..2827 +
1622816896.392203-UTR-L-elsbetiae_contig812:4210..46651622816896.392203-UTR-L-elsbetiae_contig812:4210..4665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig812 4211..4665 +
1691683894.9626353-UTR-L-elsbetiae_contig812:4210..46651691683894.9626353-UTR-L-elsbetiae_contig812:4210..4665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig812 4211..4665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.3811548-CDS-L-elsbetiae_contig812:2827..42101622816896.3811548-CDS-L-elsbetiae_contig812:2827..4210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 2828..4210 +
1691683894.9510403-CDS-L-elsbetiae_contig812:2827..42101691683894.9510403-CDS-L-elsbetiae_contig812:2827..4210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig812 2828..4210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig812.17111.1

>prot_L-elsbetiae_contig812.17111.1 ID=prot_L-elsbetiae_contig812.17111.1|Name=mRNA_L-elsbetiae_contig812.17111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=461bp
MGDVLSKAKSFYLDDASNGDVRGVAWPRELNLLHFGEKFNQPITEVAWPA
SLETTMFGKDFNQPLQGVAWPVSLQHLLFFGGVYSIVGVSWPPLLQSVRF
FGSLLNESLSRNTWPVSLKLIYFGGGFNEPIDAVAWPPSLERLFLGKDFN
QPIAGVNWPTCLDVLQLGDAFNQPIAAVAWPASLEKLFFGTDFNQPIAGV
NWPTCLEMLQLGFNFSQPITGVTWPASLEDICLGYAFNLPIAGVKWPAFL
KNITFGEMFNQAVDKVTWPGSLKEIKFGSYFNQPISAVQWPASLEQLTFE
RDFNQPIAAVAWPRSLLQLRFGMYFNQPIADVSWPDSLEEIGFCRKFKPW
YRPPVIMSMDEQKSAGVLSFFNQPINEVRWPPSLLKIVFGESFNQPVAGV
AWPPSLRELAFSRDFSLPSESFEWPASLEQLTIARRRNEPLPSWPGVQVS
GIWKAYWDIR*
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mRNA from alignment at L-elsbetiae_contig812:2823..4665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig812.17111.1 ID=mRNA_L-elsbetiae_contig812.17111.1|Name=mRNA_L-elsbetiae_contig812.17111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1843bp|location=Sequence derived from alignment at L-elsbetiae_contig812:2823..4665+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGTATGGGCGATGTCTTGTCGAAGGCAAAGAGTTTTTATCTTGACGAC
GCGTCCAACGGTGATGTGCGTGGGGTGGCCTGGCCACGCGAACTCAATTT
GCTCCACTTCGGCGAAAAATTCAACCAGCCGATCACGGAGGTGGCCTGGC
CAGCATCGCTTGAAACGACGATGTTCGGCAAGGATTTCAATCAGCCATTG
CAGGGGGTCGCCTGGCCAGTGTCGTTGCAGCATCTGCTTTTTTTCGGAGG
CGTCTATTCCATCGTTGGGGTTTCATGGCCACCACTGCTACAATCGGTAA
GGTTCTTCGGCAGCTTGCTCAACGAGTCTTTGTCCAGAAACACCTGGCCT
GTGTCGCTCAAACTTATTTACTTCGGAGGTGGCTTCAACGAGCCTATCGA
CGCGGTAGCCTGGCCGCCTTCGTTGGAGCGCCTGTTCCTCGGGAAGGACT
TCAACCAGCCCATCGCCGGGGTTAACTGGCCTACGTGTTTGGACGTGCTT
CAGCTCGGGGACGCGTTCAACCAGCCTATCGCCGCTGTAGCCTGGCCAGC
TTCTTTGGAGAAGTTGTTCTTCGGAACGGACTTCAACCAGCCCATCGCCG
GGGTTAACTGGCCTACGTGTTTGGAGATGCTTCAGCTCGGTTTTAATTTC
AGCCAGCCCATCACAGGGGTGACGTGGCCAGCTTCATTGGAGGATATTTG
CCTCGGGTATGCCTTCAACCTGCCCATTGCCGGGGTAAAATGGCCTGCAT
TTCTGAAAAATATTACTTTTGGTGAAATGTTCAACCAAGCTGTTGACAAA
GTAACGTGGCCTGGATCGTTGAAAGAGATCAAATTTGGTTCCTACTTCAA
CCAGCCCATCAGTGCGGTACAGTGGCCAGCTTCCCTTGAGCAGCTGACAT
TCGAGCGTGACTTCAACCAGCCAATCGCCGCGGTAGCATGGCCTCGATCT
CTACTGCAGCTGAGGTTCGGGATGTATTTCAACCAACCGATCGCCGATGT
GAGCTGGCCGGACTCTCTGGAAGAAATCGGCTTTTGTCGCAAATTTAAGC
CGTGGTATCGCCCTCCAGTCATTATGAGTATGGATGAACAGAAAAGCGCT
GGCGTGCTATCTTTCTTCAACCAGCCCATCAACGAAGTAAGGTGGCCTCC
GTCGCTGTTGAAAATTGTTTTCGGGGAGTCCTTCAACCAGCCAGTTGCCG
GTGTCGCGTGGCCGCCATCACTTAGGGAGCTAGCCTTCAGCCGGGATTTC
AGTTTGCCGAGTGAGAGCTTCGAGTGGCCAGCTTCCCTTGAGCAGCTGAC
GATCGCCCGCCGGCGCAATGAGCCGCTGCCGTCATGGCCTGGCGTCCAAG
TCTCCGGAATATGGAAAGCCTACTGGGACATTCGCTGAGTCTGCTGGGCC
GGGCTTGCATTGTTGGAAGTCGTTCTCTGTCGGTGAAGTGCGGGCCCAGC
GGTAGTCAGTTCACTGTCCAACTATTTTGCACCTTTTTGGACGCATATAT
GTATGTGGTGTGCGTTGTGGTGATCTCTGTGCTGCCTGTGCCCGTCATTC
CCAACACGGGGACGAAATGATGGGACCCCACAACCGCCTGCCCCAGCTAG
GATAGGCAGTGTATATAGTTCTCGTTTTTAGTTGTGTTTGGCATGAAAAA
TGGTAAATAGTGCTACACGGCGTGACATTACAAGGTTGTCGGGTGAACTT
ATGTGCTGTGACTAAAGCCTTTGTTAGCAGTGTCTACTGCAATGTGCGTC
ACTAGGGTACTGCTGTAGTGACTTGGCCGGCTGCTGGAGGTGTTGTTGTG
AGCACGCAGGGTGTGCGCTTGTGTGAGACATGGTCGCAAAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig812:2823..4665+

>mRNA_L-elsbetiae_contig812.17111.1 ID=mRNA_L-elsbetiae_contig812.17111.1|Name=mRNA_L-elsbetiae_contig812.17111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2766bp|location=Sequence derived from alignment at L-elsbetiae_contig812:2823..4665+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGATGTCTTGTCGAAGGCAAAGAGTTTTTATCTTGACGACGCGTC
CAACGGTGATGTGCGTGGGGTGGCCTGGCCACGCGAACTCAATTTGCTCC
ACTTCGGCGAAAAATTCAACCAGCCGATCACGGAGGTGGCCTGGCCAGCA
TCGCTTGAAACGACGATGTTCGGCAAGGATTTCAATCAGCCATTGCAGGG
GGTCGCCTGGCCAGTGTCGTTGCAGCATCTGCTTTTTTTCGGAGGCGTCT
ATTCCATCGTTGGGGTTTCATGGCCACCACTGCTACAATCGGTAAGGTTC
TTCGGCAGCTTGCTCAACGAGTCTTTGTCCAGAAACACCTGGCCTGTGTC
GCTCAAACTTATTTACTTCGGAGGTGGCTTCAACGAGCCTATCGACGCGG
TAGCCTGGCCGCCTTCGTTGGAGCGCCTGTTCCTCGGGAAGGACTTCAAC
CAGCCCATCGCCGGGGTTAACTGGCCTACGTGTTTGGACGTGCTTCAGCT
CGGGGACGCGTTCAACCAGCCTATCGCCGCTGTAGCCTGGCCAGCTTCTT
TGGAGAAGTTGTTCTTCGGAACGGACTTCAACCAGCCCATCGCCGGGGTT
AACTGGCCTACGTGTTTGGAGATGCTTCAGCTCGGTTTTAATTTCAGCCA
GCCCATCACAGGGGTGACGTGGCCAGCTTCATTGGAGGATATTTGCCTCG
GGTATGCCTTCAACCTGCCCATTGCCGGGGTAAAATGGCCTGCATTTCTG
AAAAATATTACTTTTGGTGAAATGTTCAACCAAGCTGTTGACAAAGTAAC
GTGGCCTGGATCGTTGAAAGAGATCAAATTTGGTTCCTACTTCAACCAGC
CCATCAGTGCGGTACAGTGGCCAGCTTCCCTTGAGCAGCTGACATTCGAG
CGTGACTTCAACCAGCCAATCGCCGCGGTAGCATGGCCTCGATCTCTACT
GCAGCTGAGGTTCGGGATGTATTTCAACCAACCGATCGCCGATGTGAGCT
GGCCGGACTCTCTGGAAGAAATCGGCTTTTGTCGCAAATTTAAGCCGTGG
TATCGCCCTCCAGTCATTATGAGTATGGATGAACAGAAAAGCGCTGGCGT
GCTATCTTTCTTCAACCAGCCCATCAACGAAGTAAGGTGGCCTCCGTCGC
TGTTGAAAATTGTTTTCGGGGAGTCCTTCAACCAGCCAGTTGCCGGTGTC
GCGTGGCCGCCATCACTTAGGGAGCTAGCCTTCAGCCGGGATTTCAGTTT
GCCGAGTGAGAGCTTCGAGTGGCCAGCTTCCCTTGAGCAGCTGACGATCG
CCCGCCGGCGCAATGAGCCGCTGCCGTCATGGCCTGGCGTCCAAGTCTCC
GGAATATGGAAAGCCTACTGGGACATTCGCTGAATGGGCGATGTCTTGTC
GAAGGCAAAGAGTTTTTATCTTGACGACGCGTCCAACGGTGATGTGCGTG
GGGTGGCCTGGCCACGCGAACTCAATTTGCTCCACTTCGGCGAAAAATTC
AACCAGCCGATCACGGAGGTGGCCTGGCCAGCATCGCTTGAAACGACGAT
GTTCGGCAAGGATTTCAATCAGCCATTGCAGGGGGTCGCCTGGCCAGTGT
CGTTGCAGCATCTGCTTTTTTTCGGAGGCGTCTATTCCATCGTTGGGGTT
TCATGGCCACCACTGCTACAATCGGTAAGGTTCTTCGGCAGCTTGCTCAA
CGAGTCTTTGTCCAGAAACACCTGGCCTGTGTCGCTCAAACTTATTTACT
TCGGAGGTGGCTTCAACGAGCCTATCGACGCGGTAGCCTGGCCGCCTTCG
TTGGAGCGCCTGTTCCTCGGGAAGGACTTCAACCAGCCCATCGCCGGGGT
TAACTGGCCTACGTGTTTGGACGTGCTTCAGCTCGGGGACGCGTTCAACC
AGCCTATCGCCGCTGTAGCCTGGCCAGCTTCTTTGGAGAAGTTGTTCTTC
GGAACGGACTTCAACCAGCCCATCGCCGGGGTTAACTGGCCTACGTGTTT
GGAGATGCTTCAGCTCGGTTTTAATTTCAGCCAGCCCATCACAGGGGTGA
CGTGGCCAGCTTCATTGGAGGATATTTGCCTCGGGTATGCCTTCAACCTG
CCCATTGCCGGGGTAAAATGGCCTGCATTTCTGAAAAATATTACTTTTGG
TGAAATGTTCAACCAAGCTGTTGACAAAGTAACGTGGCCTGGATCGTTGA
AAGAGATCAAATTTGGTTCCTACTTCAACCAGCCCATCAGTGCGGTACAG
TGGCCAGCTTCCCTTGAGCAGCTGACATTCGAGCGTGACTTCAACCAGCC
AATCGCCGCGGTAGCATGGCCTCGATCTCTACTGCAGCTGAGGTTCGGGA
TGTATTTCAACCAACCGATCGCCGATGTGAGCTGGCCGGACTCTCTGGAA
GAAATCGGCTTTTGTCGCAAATTTAAGCCGTGGTATCGCCCTCCAGTCAT
TATGAGTATGGATGAACAGAAAAGCGCTGGCGTGCTATCTTTCTTCAACC
AGCCCATCAACGAAGTAAGGTGGCCTCCGTCGCTGTTGAAAATTGTTTTC
GGGGAGTCCTTCAACCAGCCAGTTGCCGGTGTCGCGTGGCCGCCATCACT
TAGGGAGCTAGCCTTCAGCCGGGATTTCAGTTTGCCGAGTGAGAGCTTCG
AGTGGCCAGCTTCCCTTGAGCAGCTGACGATCGCCCGCCGGCGCAATGAG
CCGCTGCCGTCATGGCCTGGCGTCCAAGTCTCCGGAATATGGAAAGCCTA
CTGGGACATTCGCTGA
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