mRNA_L-elsbetiae_contig8116.17107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8116.17107.1
Unique NamemRNA_L-elsbetiae_contig8116.17107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8116.17107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8116contigL-elsbetiae_contig8116:3123..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size392
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.085903-CDS-L-elsbetiae_contig8116:3122..34851622816896.085903-CDS-L-elsbetiae_contig8116:3122..3485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8116 3123..3485 +
1691683894.7524226-CDS-L-elsbetiae_contig8116:3122..34851691683894.7524226-CDS-L-elsbetiae_contig8116:3122..3485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8116 3123..3485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.0971582-UTR-L-elsbetiae_contig8116:3485..35121622816896.0971582-UTR-L-elsbetiae_contig8116:3485..3512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8116 3486..3512 +
1691683894.763414-UTR-L-elsbetiae_contig8116:3485..35121691683894.763414-UTR-L-elsbetiae_contig8116:3485..3512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8116 3486..3512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8116.17107.1prot_L-elsbetiae_contig8116.17107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8116 3123..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8116.17107.1

>prot_L-elsbetiae_contig8116.17107.1 ID=prot_L-elsbetiae_contig8116.17107.1|Name=mRNA_L-elsbetiae_contig8116.17107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
APLLLLLLFDRPLPAPPPASFRLRSGCCFHRFSGSDIVADNEPEPPPSAV
SLLLFPSSRSSCSSSCWSSSSVWSLSAGGKAHGIPGSPSLSSWSSRSCSG
ASSALAPYSAAVASGPFFAS*
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mRNA from alignment at L-elsbetiae_contig8116:3123..3512+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8116.17107.1 ID=mRNA_L-elsbetiae_contig8116.17107.1|Name=mRNA_L-elsbetiae_contig8116.17107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig8116:3123..3512+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGTTGCTGCTGCTGCTGCTGTTCGACCGGCCCCTGCCGGCCCCGCC
GCCAGCCAGCTTTCGTCTCCGATCCGGGTGCTGCTTCCATCGGTTCTCAG
GGTCCGACATCGTCGCCGACAACGAGCCCGAGCCACCCCCGTCTGCTGTA
TCGCTGCTTTTATTCCCTTCTTCCCGTTCTTCCTGCTCCTCGTCTTGCTG
GTCTTCGTCGTCGGTCTGGTCGCTCTCTGCCGGCGGCAAGGCCCACGGTA
TCCCTGGAAGTCCGTCGCTATCCTCTTGGTCTTCTCGTAGCTGCTCTGGT
GCGTCGTCAGCTTTGGCACCGTATTCGGCGGCCGTAGCCTCGGGGCCCTT
TTTCGCCTCATGAGCTGTCGGCGCGGATGGGTTTGCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8116:3123..3512+

>mRNA_L-elsbetiae_contig8116.17107.1 ID=mRNA_L-elsbetiae_contig8116.17107.1|Name=mRNA_L-elsbetiae_contig8116.17107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig8116:3123..3512+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGTTGCTGCTGCTGCTGCTGTTCGACCGGCCCCTGCCGGCCCCGCC
GCCAGCCAGCTTTCGTCTCCGATCCGGGTGCTGCTTCCATCGGTTCTCAG
GGTCCGACATCGTCGCCGACAACGAGCCCGAGCCACCCCCGTCTGCTGTA
TCGCTGCTTTTATTCCCTTCTTCCCGTTCTTCCTGCTCCTCGTCTTGCTG
GTCTTCGTCGTCGGTCTGGTCGCTCTCTGCCGGCGGCAAGGCCCACGGTA
TCCCTGGAAGTCCGTCGCTATCCTCTTGGTCTTCTCGTAGCTGCTCTGGT
GCGTCGTCAGCTTTGGCACCGTATTCGGCGGCCGTAGCCTCGGGGCCCTT
TTTCGCCTCATGAGCGCCGTTGCTGCTGCTGCTGCTGTTCGACCGGCCCC
TGCCGGCCCCGCCGCCAGCCAGCTTTCGTCTCCGATCCGGGTGCTGCTTC
CATCGGTTCTCAGGGTCCGACATCGTCGCCGACAACGAGCCCGAGCCACC
CCCGTCTGCTGTATCGCTGCTTTTATTCCCTTCTTCCCGTTCTTCCTGCT
CCTCGTCTTGCTGGTCTTCGTCGTCGGTCTGGTCGCTCTCTGCCGGCGGC
AAGGCCCACGGTATCCCTGGAAGTCCGTCGCTATCCTCTTGGTCTTCTCG
TAGCTGCTCTGGTGCGTCGTCAGCTTTGGCACCGTATTCGGCGGCCGTAG
CCTCGGGGCCCTTTTTCGCCTCATGA
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