mRNA_L-elsbetiae_contig8105.17099.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8105.17099.1
Unique NamemRNA_L-elsbetiae_contig8105.17099.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8105.17099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8105contigL-elsbetiae_contig8105:3887..4261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.5688477-CDS-L-elsbetiae_contig8105:3886..42611622816895.5688477-CDS-L-elsbetiae_contig8105:3886..4261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8105 3887..4261 +
1691683894.3997176-CDS-L-elsbetiae_contig8105:3886..42611691683894.3997176-CDS-L-elsbetiae_contig8105:3886..4261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8105 3887..4261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8105.17099.1prot_L-elsbetiae_contig8105.17099.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8105 3887..4261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8105.17099.1

>prot_L-elsbetiae_contig8105.17099.1 ID=prot_L-elsbetiae_contig8105.17099.1|Name=mRNA_L-elsbetiae_contig8105.17099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
RENFREGGREEKNTTMLRKLRPCSPERPISSSLSLTLSLGRYLLSVRPLS
LLSEVCSCDRLSEFFSYFLQILSGSRFSAPSTENPFSGDLSLHGFRYLFF
RFRQKTGLFSHNLTLNLPRIRDTTQ
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mRNA from alignment at L-elsbetiae_contig8105:3887..4261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8105.17099.1 ID=mRNA_L-elsbetiae_contig8105.17099.1|Name=mRNA_L-elsbetiae_contig8105.17099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig8105:3887..4261+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGAAAATTTCCGGGAGGGAGGGCGGGAAGAAAAAAACACGACGATGCT
CCGCAAACTCCGTCCCTGTTCCCCTGAAAGGCCTATCTCTTCTTCTCTGT
CCCTGACTCTCTCTCTTGGGCGCTACTTGCTCTCTGTTCGCCCCCTCTCC
TTACTCAGCGAAGTTTGTTCTTGTGATCGTCTCTCTGAGTTTTTTTCCTA
CTTCTTGCAGATTCTTTCTGGCTCACGGTTCTCTGCTCCGTCAACTGAAA
ACCCGTTCTCCGGAGATCTATCTCTGCATGGATTCAGATATTTATTTTTC
CGTTTCCGCCAAAAGACCGGGTTGTTCTCTCACAACTTAACGCTCAACCT
TCCACGTATTCGCGACACCACCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8105:3887..4261+

>mRNA_L-elsbetiae_contig8105.17099.1 ID=mRNA_L-elsbetiae_contig8105.17099.1|Name=mRNA_L-elsbetiae_contig8105.17099.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig8105:3887..4261+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGAAAATTTCCGGGAGGGAGGGCGGGAAGAAAAAAACACGACGATGCT
CCGCAAACTCCGTCCCTGTTCCCCTGAAAGGCCTATCTCTTCTTCTCTGT
CCCTGACTCTCTCTCTTGGGCGCTACTTGCTCTCTGTTCGCCCCCTCTCC
TTACTCAGCGAAGTTTGTTCTTGTGATCGTCTCTCTGAGTTTTTTTCCTA
CTTCTTGCAGATTCTTTCTGGCTCACGGTTCTCTGCTCCGTCAACTGAAA
ACCCGTTCTCCGGAGATCTATCTCTGCATGGATTCAGATATTTATTTTTC
CGTTTCCGCCAAAAGACCGGGTTGTTCTCTCACAACTTAACGCTCAACCT
TCCACGTATTCGCGACACCACCCAGCGTGAAAATTTCCGGGAGGGAGGGC
GGGAAGAAAAAAACACGACGATGCTCCGCAAACTCCGTCCCTGTTCCCCT
GAAAGGCCTATCTCTTCTTCTCTGTCCCTGACTCTCTCTCTTGGGCGCTA
CTTGCTCTCTGTTCGCCCCCTCTCCTTACTCAGCGAAGTTTGTTCTTGTG
ATCGTCTCTCTGAGTTTTTTTCCTACTTCTTGCAGATTCTTTCTGGCTCA
CGGTTCTCTGCTCCGTCAACTGAAAACCCGTTCTCCGGAGATCTATCTCT
GCATGGATTCAGATATTTATTTTTCCGTTTCCGCCAAAAGACCGGGTTGT
TCTCTCACAACTTAACGCTCAACCTTCCACGTATTCGCGACACCACCCAG
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