mRNA_L-elsbetiae_contig8105.17098.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8105.17098.1
Unique NamemRNA_L-elsbetiae_contig8105.17098.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8105.17098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8105contigL-elsbetiae_contig8105:3133..3885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size753
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8105.17098.1prot_L-elsbetiae_contig8105.17098.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8105 3270..3653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.5089493-UTR-L-elsbetiae_contig8105:3132..32691622816895.5089493-UTR-L-elsbetiae_contig8105:3132..3269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8105 3133..3269 +
1691683894.368319-UTR-L-elsbetiae_contig8105:3132..32691691683894.368319-UTR-L-elsbetiae_contig8105:3132..3269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8105 3133..3269 +
1622816895.531471-UTR-L-elsbetiae_contig8105:3653..38851622816895.531471-UTR-L-elsbetiae_contig8105:3653..3885Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8105 3654..3885 +
1691683894.3890152-UTR-L-elsbetiae_contig8105:3653..38851691683894.3890152-UTR-L-elsbetiae_contig8105:3653..3885Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8105 3654..3885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.5198393-CDS-L-elsbetiae_contig8105:3269..36531622816895.5198393-CDS-L-elsbetiae_contig8105:3269..3653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8105 3270..3653 +
1691683894.3790975-CDS-L-elsbetiae_contig8105:3269..36531691683894.3790975-CDS-L-elsbetiae_contig8105:3269..3653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8105 3270..3653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8105.17098.1

>prot_L-elsbetiae_contig8105.17098.1 ID=prot_L-elsbetiae_contig8105.17098.1|Name=mRNA_L-elsbetiae_contig8105.17098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
MCGLRALYQYFRAPGHHRTTYLLFTTLNNTDQRRLTRHPPPKQWNKADPP
PPRARWGGLVVLCLYSYISPYWCATGWSSVSNGPLCGNPPQATKKSRGSS
VSKGSIFFEDPPQDLPLFVCNRMVFRI*
back to top

mRNA from alignment at L-elsbetiae_contig8105:3133..3885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8105.17098.1 ID=mRNA_L-elsbetiae_contig8105.17098.1|Name=mRNA_L-elsbetiae_contig8105.17098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=753bp|location=Sequence derived from alignment at L-elsbetiae_contig8105:3133..3885+ (Laminarionema elsbetiae ELsaHSoW15)
GTACACCCTTGTCGTCGTATGAAACCCAGTTTTACGTCAAAAAAGTGGGT
TTTAAATCTTTGTTTCGCCTCGCGGCGTCATGAAAAGGGCCCAAATATTT
TGCCTTCGGCGAAAAAAGGTGCGGCCCCAATAAAGCGATGTGCGGCTTGC
GCGCACTTTATCAATATTTTCGTGCGCCAGGGCACCACCGCACCACCTAT
TTACTATTTACGACCCTGAATAACACTGACCAACGCCGGCTAACACGTCA
CCCTCCCCCAAAACAATGGAACAAAGCTGACCCTCCTCCCCCCCGCGCGC
GGTGGGGTGGGCTGGTCGTGCTCTGCCTGTACAGCTACATCTCCCCCTAT
TGGTGTGCAACCGGATGGTCTTCCGTATCTAACGGCCCGCTCTGCGGGAA
CCCACCACAAGCCACTAAAAAATCCAGGGGATCTTCCGTATCTAAAGGCT
CGATATTCTTCGAGGACCCACCACAAGATCTACCACTATTCGTGTGCAAC
CGGATGGTCTTCCGTATCTAACGGCTCGACATACTCGAGGACCCACCACA
AGATCTACCACTATTCGTGTCGGTGCAACCGGGTGGTCTTCCTAACAGCC
CGCTTCGCGGGAATCCACAAGTCACCCACTAATCCGGGTGGTCTTCCGTA
TGTAACAGCTCGATATTACTCGAGGACCCACCACAAGATTTCCCGCGAAA
ACTAAAGGGATTAACTTACGTAATGTAACGGCCATTTTCCTGTTTCCCAT
CCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8105:3133..3885+

>mRNA_L-elsbetiae_contig8105.17098.1 ID=mRNA_L-elsbetiae_contig8105.17098.1|Name=mRNA_L-elsbetiae_contig8105.17098.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig8105:3133..3885+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGGCTTGCGCGCACTTTATCAATATTTTCGTGCGCCAGGGCACCA
CCGCACCACCTATTTACTATTTACGACCCTGAATAACACTGACCAACGCC
GGCTAACACGTCACCCTCCCCCAAAACAATGGAACAAAGCTGACCCTCCT
CCCCCCCGCGCGCGGTGGGGTGGGCTGGTCGTGCTCTGCCTGTACAGCTA
CATCTCCCCCTATTGGTGTGCAACCGGATGGTCTTCCGTATCTAACGGCC
CGCTCTGCGGGAACCCACCACAAGCCACTAAAAAATCCAGGGGATCTTCC
GTATCTAAAGGCTCGATATTCTTCGAGGACCCACCACAAGATCTACCACT
ATTCGTGTGCAACCGGATGGTCTTCCGTATCTAAATGTGCGGCTTGCGCG
CACTTTATCAATATTTTCGTGCGCCAGGGCACCACCGCACCACCTATTTA
CTATTTACGACCCTGAATAACACTGACCAACGCCGGCTAACACGTCACCC
TCCCCCAAAACAATGGAACAAAGCTGACCCTCCTCCCCCCCGCGCGCGGT
GGGGTGGGCTGGTCGTGCTCTGCCTGTACAGCTACATCTCCCCCTATTGG
TGTGCAACCGGATGGTCTTCCGTATCTAACGGCCCGCTCTGCGGGAACCC
ACCACAAGCCACTAAAAAATCCAGGGGATCTTCCGTATCTAAAGGCTCGA
TATTCTTCGAGGACCCACCACAAGATCTACCACTATTCGTGTGCAACCGG
ATGGTCTTCCGTATCTAA
back to top