mRNA_L-elsbetiae_contig8099.17091.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8099.17091.1
Unique NamemRNA_L-elsbetiae_contig8099.17091.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8099.17091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8099contigL-elsbetiae_contig8099:1127..2493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1367
Cds size792
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.553687-CDS-L-elsbetiae_contig8099:1126..19181622816894.553687-CDS-L-elsbetiae_contig8099:1126..1918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8099 1127..1918 +
1691683893.650602-CDS-L-elsbetiae_contig8099:1126..19181691683893.650602-CDS-L-elsbetiae_contig8099:1126..1918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8099 1127..1918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.5654683-UTR-L-elsbetiae_contig8099:1918..24931622816894.5654683-UTR-L-elsbetiae_contig8099:1918..2493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8099 1919..2493 +
1691683893.661675-UTR-L-elsbetiae_contig8099:1918..24931691683893.661675-UTR-L-elsbetiae_contig8099:1918..2493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8099 1919..2493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8099.17091.1prot_L-elsbetiae_contig8099.17091.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8099 1127..1918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8099.17091.1

>prot_L-elsbetiae_contig8099.17091.1 ID=prot_L-elsbetiae_contig8099.17091.1|Name=mRNA_L-elsbetiae_contig8099.17091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=264bp
MQARKFGSHLQRPIGDHQFRPGGVRRSRASTARRARFLGLGSSLSEDSSE
DSSSVAVSAAATRRAIGTRSHLPAAAAGGAAAAAAGAGAGAGAGAAAAGA
AAAGAAAAATGVGAAVEEEPLDLFAFLGTTQLEVVALGPAAAAAAATGLL
ALEAAPVAVATAAAAAAAAAAAAAGLLALEAALAAAVGAGAAAAAEEGSL
DLFALGSTPLLEAVALGPATATGPAFEAAPATPFVLVVLVVRRTIPGAAC
WVQNSLFFLPLTP*
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mRNA from alignment at L-elsbetiae_contig8099:1127..2493+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8099.17091.1 ID=mRNA_L-elsbetiae_contig8099.17091.1|Name=mRNA_L-elsbetiae_contig8099.17091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1367bp|location=Sequence derived from alignment at L-elsbetiae_contig8099:1127..2493+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCACGAAAATTCGGGTCGCACCTCCAAAGGCCGATCGGCGACCA
CCAATTTCGCCCTGGCGGGGTCCGTCGGTCCAGGGCGTCGACCGCGCGGC
GTGCTCGCTTCTTGGGCCTCGGCTCTTCGCTTTCCGAAGACAGCTCCGAA
GACAGCTCCTCCGTCGCTGTCTCGGCAGCAGCAACTCGGCGCGCAATCGG
CACCCGCTCGCATCTCCCCGCTGCTGCTGCCGGCGGTGCTGCTGCCGCCG
CTGCTGGTGCTGGTGCTGGTGCTGGTGCCGGTGCTGCCGCTGCTGGTGCT
GCCGCTGCTGGTGCTGCTGCTGCCGCCACTGGTGTTGGTGCTGCTGTGGA
AGAAGAGCCTCTTGACCTCTTTGCCTTCTTGGGAACCACACAACTAGAGG
TTGTGGCCTTGGGACCAGCAGCAGCAGCAGCAGCAGCGACAGGTCTGCTG
GCCTTAGAGGCAGCTCCAGTTGCTGTTGCCACCGCCGCCGCCGCCGCCGC
AGCAGCAGCAGCAGCAGCAGCAGGTCTGCTGGCCTTAGAGGCAGCTTTAG
CTGCTGCTGTCGGCGCCGGCGCCGCTGCCGCTGCTGAAGAGGGGTCTCTT
GACCTTTTTGCCTTGGGAAGTACACCATTATTGGAGGCTGTGGCCTTGGG
ACCAGCAACAGCGACAGGCCCTGCCTTCGAGGCAGCACCAGCGACGCCTT
TCGTCTTGGTTGTCTTGGTGGTGAGGCGGACCATCCCGGGGGCAGCATGC
TGGGTACAGAACTCCCTCTTCTTCCTGCCCCTCACGCCGTAGCTCGGGCC
CACCGTGCAGCCGCGGTGGGCGCACTCCTTCTTGTAGACATCCACCATCC
CATCGTGCGCGTGCGCGCAGCAGAACCGGGGCTTGGCGCCGGCGGCACCG
TAGGTCGGCTGCTTGGGGCAGCCCTGCTTCTCGCACCTCTTGTTGACGAC
ATTCACCATGCTGTCCGTGGCGTGAGAGGCGCAAAACTCCGCCCTCTTGC
TGCCAGGAGGAGCGTAGTTGGGCCGCGTGGTGCACCCCGGATGGTTGCAC
TTCTTGCCGACGACCTTCACCATGCCGACCGGAGCGTGAGTGCGGCAGAA
CTCTGCCTTTCTTGTTCCTTCGACCCCGAAGCTGGGCTGCTTGACACATG
CCTCGTTGCCGCACTTACTCGGCATTTTGTTTTTCAAGCCCGGACTGCTC
CTCCAACGGATCCAGCGGCTATGTAGCGACAGCTCAGCGGCCACGACTTT
TGAGCGTTCACTCTCAAGCAAATTGCTGTGCAGGATCCTGTGCAACGTTA
GCTGTGTGTCTTGATCTCTTGCTGTGCTGCTTGACCGCGGCAGGGCGCAC
GCTCCGCACGCTTGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8099:1127..2493+

>mRNA_L-elsbetiae_contig8099.17091.1 ID=mRNA_L-elsbetiae_contig8099.17091.1|Name=mRNA_L-elsbetiae_contig8099.17091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1584bp|location=Sequence derived from alignment at L-elsbetiae_contig8099:1127..2493+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGCACGAAAATTCGGGTCGCACCTCCAAAGGCCGATCGGCGACCA
CCAATTTCGCCCTGGCGGGGTCCGTCGGTCCAGGGCGTCGACCGCGCGGC
GTGCTCGCTTCTTGGGCCTCGGCTCTTCGCTTTCCGAAGACAGCTCCGAA
GACAGCTCCTCCGTCGCTGTCTCGGCAGCAGCAACTCGGCGCGCAATCGG
CACCCGCTCGCATCTCCCCGCTGCTGCTGCCGGCGGTGCTGCTGCCGCCG
CTGCTGGTGCTGGTGCTGGTGCTGGTGCCGGTGCTGCCGCTGCTGGTGCT
GCCGCTGCTGGTGCTGCTGCTGCCGCCACTGGTGTTGGTGCTGCTGTGGA
AGAAGAGCCTCTTGACCTCTTTGCCTTCTTGGGAACCACACAACTAGAGG
TTGTGGCCTTGGGACCAGCAGCAGCAGCAGCAGCAGCGACAGGTCTGCTG
GCCTTAGAGGCAGCTCCAGTTGCTGTTGCCACCGCCGCCGCCGCCGCCGC
AGCAGCAGCAGCAGCAGCAGCAGGTCTGCTGGCCTTAGAGGCAGCTTTAG
CTGCTGCTGTCGGCGCCGGCGCCGCTGCCGCTGCTGAAGAGGGGTCTCTT
GACCTTTTTGCCTTGGGAAGTACACCATTATTGGAGGCTGTGGCCTTGGG
ACCAGCAACAGCGACAGGCCCTGCCTTCGAGGCAGCACCAGCGACGCCTT
TCGTCTTGGTTGTCTTGGTGGTGAGGCGGACCATCCCGGGGGCAGCATGC
TGGGTACAGAACTCCCTCTTCTTCCTGCCCCTCACGCCGTAGATGCAGGC
ACGAAAATTCGGGTCGCACCTCCAAAGGCCGATCGGCGACCACCAATTTC
GCCCTGGCGGGGTCCGTCGGTCCAGGGCGTCGACCGCGCGGCGTGCTCGC
TTCTTGGGCCTCGGCTCTTCGCTTTCCGAAGACAGCTCCGAAGACAGCTC
CTCCGTCGCTGTCTCGGCAGCAGCAACTCGGCGCGCAATCGGCACCCGCT
CGCATCTCCCCGCTGCTGCTGCCGGCGGTGCTGCTGCCGCCGCTGCTGGT
GCTGGTGCTGGTGCTGGTGCCGGTGCTGCCGCTGCTGGTGCTGCCGCTGC
TGGTGCTGCTGCTGCCGCCACTGGTGTTGGTGCTGCTGTGGAAGAAGAGC
CTCTTGACCTCTTTGCCTTCTTGGGAACCACACAACTAGAGGTTGTGGCC
TTGGGACCAGCAGCAGCAGCAGCAGCAGCGACAGGTCTGCTGGCCTTAGA
GGCAGCTCCAGTTGCTGTTGCCACCGCCGCCGCCGCCGCCGCAGCAGCAG
CAGCAGCAGCAGCAGGTCTGCTGGCCTTAGAGGCAGCTTTAGCTGCTGCT
GTCGGCGCCGGCGCCGCTGCCGCTGCTGAAGAGGGGTCTCTTGACCTTTT
TGCCTTGGGAAGTACACCATTATTGGAGGCTGTGGCCTTGGGACCAGCAA
CAGCGACAGGCCCTGCCTTCGAGGCAGCACCAGCGACGCCTTTCGTCTTG
GTTGTCTTGGTGGTGAGGCGGACCATCCCGGGGGCAGCATGCTGGGTACA
GAACTCCCTCTTCTTCCTGCCCCTCACGCCGTAG
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