mRNA_L-elsbetiae_contig8098.17090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8098.17090.1
Unique NamemRNA_L-elsbetiae_contig8098.17090.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8098.17090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8098contigL-elsbetiae_contig8098:3025..5334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size565
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8098.17090.1prot_L-elsbetiae_contig8098.17090.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8098 3025..5334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.5025349-CDS-L-elsbetiae_contig8098:3024..31051622816894.5025349-CDS-L-elsbetiae_contig8098:3024..3105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8098 3025..3105 -
1691683893.6221387-CDS-L-elsbetiae_contig8098:3024..31051691683893.6221387-CDS-L-elsbetiae_contig8098:3024..3105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8098 3025..3105 -
1622816894.5138905-CDS-L-elsbetiae_contig8098:4595..46541622816894.5138905-CDS-L-elsbetiae_contig8098:4595..4654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8098 4596..4654 -
1691683893.6327493-CDS-L-elsbetiae_contig8098:4595..46541691683893.6327493-CDS-L-elsbetiae_contig8098:4595..4654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8098 4596..4654 -
1622816894.5240448-CDS-L-elsbetiae_contig8098:4910..53341622816894.5240448-CDS-L-elsbetiae_contig8098:4910..5334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8098 4911..5334 -
1691683893.6415844-CDS-L-elsbetiae_contig8098:4910..53341691683893.6415844-CDS-L-elsbetiae_contig8098:4910..5334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8098 4911..5334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8098.17090.1

>prot_L-elsbetiae_contig8098.17090.1 ID=prot_L-elsbetiae_contig8098.17090.1|Name=mRNA_L-elsbetiae_contig8098.17090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MAAVRRELADTSDGLRLAFSGLKVIDEEVAALMAGVGGLPLSEAAARVSQ
GARIAASVASKVLKAAGLAEAAAGRAAAAVTATQKAKETADQVAAAAVAA
AAVLAQKAEAAAAAAAALEVKIYPPLVPGDQSGAGDINRGQGSGSSDGAI
VGNGRAAVALKTIPGEGERDEEETFGAEEKSEASNKEE
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mRNA from alignment at L-elsbetiae_contig8098:3025..5334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8098.17090.1 ID=mRNA_L-elsbetiae_contig8098.17090.1|Name=mRNA_L-elsbetiae_contig8098.17090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2310bp|location=Sequence derived from alignment at L-elsbetiae_contig8098:3025..5334- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCAGTTAGGAGAGAACTGGCGGACACATCGGATGGGCTAAGACT
CGCGTTTTCTGGCCTCAAAGTCATAGATGAAGAAGTTGCGGCTCTCATGG
CTGGTGTAGGCGGCCTCCCTCTGTCGGAAGCGGCGGCGAGGGTATCGCAA
GGTGCTAGAATCGCGGCATCGGTGGCATCAAAAGTCTTGAAAGCAGCCGG
GTTGGCAGAGGCGGCGGCCGGCAGAGCAGCGGCGGCGGTGACAGCGACCC
AAAAAGCAAAGGAAACAGCAGATCAGGTAGCGGCAGCAGCCGTTGCGGCG
GCGGCAGTGCTGGCCCAGAAGGCAGAAGCGGCAGCGGCGGCAGCGGCAGC
CTTGGAAGTGAAGATCTACCCGCCGCTTGTGCCGGGTGACCAAAGTGGCG
CTGGAGACATCAACAGGGGACAAGGTGAGGACATGCGCAGCTGGAAAGGG
GGAACAGATACCACGGAACGAGAGTCTTGTAGTGCAGAGAGAGAGACAGC
AGATGCGCGTCTTAACAATGTTAATCAATTTTGCTGTATCCTACCGCCTG
TACTCTTCGCATTTGAACGTGTGTGCTTCTCTCGCCTGGGAAGTGCGCTC
GCCCCTTACCGAACCTTTAACACCGCTCGAAACGTTCCCCGTTCACCTAT
TCGCCGACCTTGCTGTTTCGGTGCGTGCAGGCTCTGGATCATCTGATGGT
GCGATAGTCGGCAATGGTCGTGCCGCTGTGGCATTGAAGGTAGCCCTCAA
TGGCGAACACTGAGGTTCTTGTTTTTCTCGCTGCAAAAAGTCAAAGGCCT
CACGCGGTTCCCTGCATACTGTATAGATAGACAACAGGAGGTTACTTGAA
ATGTTGGTTTTTATTTTCTCATGTGTTCTTGTTGATTATAGGTATGTATA
GCCTATAGACTATGCTCTCGCGCAAACCAATGTGTTACACCAAAACCTGC
CAGACTCTTCCCGGCGTAGAAAGGTGGTTGTTCCGAAACGTAAAAAAACG
GCCAATGCCTTGTCTCAAGGCCGTTCTCGTGGCCGAGATTTTGTTTTTCT
TCCTTCGCGTTCGGTCAGATAAAATATGTAAAGTTCATATTCTCATGTTA
TATTTATACGCGAAAACTAGCCAACCAATTCAGAAAAAGGCTGCGGTATT
CGCTCCCCAGGCACGCTTAAACGCCGAAAACTCAAGTTATCGATACATCG
GGAAAGAAACGTATAGTGTAGGCCAACTTGTATTCTTCGATACGGGAAAA
CTGACCAACGGATTCCAAAAGAGGCAGCGAAAACGATTCCTCTGACCAAT
CCCGAGGTACACAGCGTGTTTTTTGGGTATGCCAAGTTAACCTCTAGTTG
TCGAGACATTCGTTTTGTTTGTTCAAAACACCGCTTTTCCCTTTTTTTTC
GTGGTGTTTTTGTTTCGGCGGGGCTGCTGAATAACTAAAAAGAAGTTAGA
GTACTGCAATGACTCTTGTTCAAGCCCATATTTTTGTTCTTGGTCTGAAT
ATCAACGAGATGTTAATTAACCGTCCACTGTCTCTCTCCGTCTGGTGATC
GCCAGTCCCCCGCATCGCTCGACTTCGTCCAACGGGCTATACCACGCACA
GTCGATCGCCCCCCTTCTTCTGTAGCCTATATGTATGTGTCGTCATCTCT
TGGACGACTCGGCTGCCCGAGCCCAATCGAAGAGCGCGGCGCTTTCCCCC
CCGGTATTCGGAGTTTCCGACCATACTGCTATTGTGCAGTCCCACCATGT
CTTCGCCGAATGTTGTTTTGCAGATTACTACATTACTACTGCTGTGAAGA
GATGTGCTTAGCTTCCTACTGAGGGTGTTTTTCGCAAGTATGCCACAGTA
TGTATGTGTGTACAATAAGCTCAACCGCGATTTGTGTGCTTCCGTTAGTC
GCATCTAATTATGCTGTGCAACTTTTCCGACAACAGCAGCTCTTCACAGG
AGGGGGAGGGTAAATAGGCATTCATCACTGCCTTGGAATCGCTTCCATTG
AAACGGGGGCGTAAAGCGCGCAAGACCTCGTACGTCTATCGATTCTTGGA
GCTATTTTATTGTTTGCTCTGTGTTGATAAACTCGGAGCGAATTGCCCAG
ATTCGACCTGTTGAGGCCGGGTCTCTTTAGCCGTAAGAAAGCACTCTCGT
TGTTCCCTCTCGATCGACATCGGCGCGTTGTCTTTGATGTACGATGGCTG
ACCCATCTTCTATTGATATCTTGCGACAGACGATTCCTGGAGAAGGTGAG
AGAGATGAGGAGGAAACATTTGGGGCGGAGGAAAAATCTGAGGCAAGCAA
CAAGGAGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8098:3025..5334-

>mRNA_L-elsbetiae_contig8098.17090.1 ID=mRNA_L-elsbetiae_contig8098.17090.1|Name=mRNA_L-elsbetiae_contig8098.17090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig8098:3025..5334- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCAGTTAGGAGAGAACTGGCGGACACATCGGATGGGCTAAGACT
CGCGTTTTCTGGCCTCAAAGTCATAGATGAAGAAGTTGCGGCTCTCATGG
CTGGTGTAGGCGGCCTCCCTCTGTCGGAAGCGGCGGCGAGGGTATCGCAA
GGTGCTAGAATCGCGGCATCGGTGGCATCAAAAGTCTTGAAAGCAGCCGG
GTTGGCAGAGGCGGCGGCCGGCAGAGCAGCGGCGGCGGTGACAGCGACCC
AAAAAGCAAAGGAAACAGCAGATCAGGTAGCGGCAGCAGCCGTTGCGGCG
GCGGCAGTGCTGGCCCAGAAGGCAGAAGCGGCAGCGGCGGCAGCGGCAGC
CTTGGAAGTGAAGATCTACCCGCCGCTTGTGCCGGGTGACCAAAGTGGCG
CTGGAGACATCAACAGGGGACAAGATGGCAGCAGTTAGGAGAGAACTGGC
GGACACATCGGATGGGCTAAGACTCGCGTTTTCTGGCCTCAAAGTCATAG
ATGAAGAAGTTGCGGCTCTCATGGCTGGTGTAGGCGGCCTCCCTCTGTCG
GAAGCGGCGGCGAGGGTATCGCAAGGTGCTAGAATCGCGGCATCGGTGGC
ATCAAAAGTCTTGAAAGCAGCCGGGTTGGCAGAGGCGGCGGCCGGCAGAG
CAGCGGCGGCGGTGACAGCGACCCAAAAAGCAAAGGAAACAGCAGATCAG
GTAGCGGCAGCAGCCGTTGCGGCGGCGGCAGTGCTGGCCCAGAAGGCAGA
AGCGGCAGCGGCGGCAGCGGCAGCCTTGGAAGTGAAGATCTACCCGCCGC
TTGTGCCGGGTGACCAAAGTGGCGCTGGAGACATCAACAGGGGACAAGGC
TCTGGATCATCTGATGGTGCGATAGTCGGCAATGGTCGTGCCGCTGTGGC
ATTGAAGGCTCTGGATCATCTGATGGTGCGATAGTCGGCAATGGTCGTGC
CGCTGTGGCATTGAAGACGATTCCTGGAGAAGGTGAGAGAGATGAGGAGG
AAACATTTGGGGCGGAGGAAAAATCTGAGGCAAGCAACAAGGAGGAAACG
ATTCCTGGAGAAGGTGAGAGAGATGAGGAGGAAACATTTGGGGCGGAGGA
AAAATCTGAGGCAAGCAACAAGGAGGAA
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