mRNA_L-elsbetiae_contig8096.17088.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8096.17088.1
Unique NamemRNA_L-elsbetiae_contig8096.17088.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: D8LHX2_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 6.710e-19
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = -2 
Query:    2 CGSCFTIGSRSDE--FVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDME 163
            C    T+  RSDE  FV++ACDGVWDVM NDEACFFLRKSIQEGNRDLG+ILEDME
Sbjct:  405 CDPEVTVIKRSDEDEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDME 460
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A1V9ZVL1_9STRA (Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVL1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.160e-8
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = -2 
Query:    5 SRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 139
            S+ DEF++LACDG+WDVM ND+AC F+R  + +G  ++G I E++
Sbjct:  223 SKEDEFLILACDGIWDVMTNDDACDFVRSLMNKGESNMGLICEEL 267
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A024UAN9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAN9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.210e-8
Identity = 24/45 (53.33%), Postives = 37/45 (82.22%), Query Frame = -2 
Query:    5 SRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 139
            S ++EF++LACDGVWDV++N+EAC F+R  ++ G RD+G I E++
Sbjct:  225 SAANEFLLLACDGVWDVLSNEEACDFVRSVMKLGERDMGLICEEL 269
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A7R9ZR42_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZR42_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-8
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = -2 
Query:    5 CFTIGSRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 154
            C+    ++DEFV+LACDGVWDVM N+E    ++  + EG  DLG   E+M
Sbjct:   83 CYPRNRKTDEFVVLACDGVWDVMTNEECSAMIQDLLDEGETDLGMTCEEM 132
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A485LRX1_9STRA (Aste57867_24962 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRX1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.260e-8
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:    5 IGSRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 145
            + S  +EF++LACDGVWDVM+N+EAC ++R  + +G  DLG I E++
Sbjct:  227 VRSHENEFLLLACDGVWDVMSNEEACQYVRWLMWQGETDLGLICEEI 273
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A067CWE3_SAPPC (PPM-type phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CWE3_SAPPC)

HSP 1 Score: 57.8 bits (138), Expect = 5.660e-8
Identity = 22/47 (46.81%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:    5 IGSRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 145
            + ++ +EF++LACDG+WDVM N+EAC F+R  + +G  ++G I E+M
Sbjct:  221 VRNKENEFLILACDGIWDVMTNEEACDFVRSLMLKGENNMGLICEEM 267
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A8K1FKV9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKV9_PYTOL)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-7
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = -2 
Query:    5 SDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 133
            S+EF+++ACDG+WDVM ND+AC  +R  ++ G  D+G I ED+
Sbjct:  234 SEEFLIIACDGIWDVMTNDDACNHVRMLMERGESDMGLIAEDV 276
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A1V9YXK3_9STRA (Protein phosphatase 2C n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXK3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.440e-7
Identity = 21/47 (44.68%), Postives = 36/47 (76.60%), Query Frame = -2 
Query:    5 IGSRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 145
            + ++ +EF++LACDG+WDVM N++AC F+R  + +G  ++G I E+M
Sbjct:  215 VRNKENEFLILACDGIWDVMTNEDACDFVRGLMNQGESNMGLICEEM 261
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A6G0WXM2_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXM2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.440e-7
Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = -2 
Query:    5 SRSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 139
            ++ DEF++LACDG+WDVM N+EAC ++R    +G  +LG + E++
Sbjct:  221 TKDDEFLILACDGIWDVMTNEEACDYVRSLFDKGETNLGLVCEEV 265
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BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Match: A0A484DUJ2_BRELC (PPM-type phosphatase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUJ2_BRELC)

HSP 1 Score: 56.6 bits (135), Expect = 1.490e-7
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = -2 
Query:    5 RSDEFVMLACDGVWDVMANDEACFFLRKSIQEGNRDLGKILEDM 136
            +++EF++LACDG+WDVM NDE C F+R+ +  G  DL  I E++
Sbjct:  232 KTEEFLVLACDGIWDVMTNDEICAFIRQLLSNGETDLRLIAEEV 275
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8096.17088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX2_ECTSI6.710e-1976.79Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A1V9ZVL1_9STRA1.160e-851.11Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A024UAN9_9STRA1.210e-853.33PPM-type phosphatase domain-containing protein n=2... [more]
A0A7R9ZR42_9STRA1.550e-848.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A485LRX1_9STRA4.260e-851.06Aste57867_24962 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CWE3_SAPPC5.660e-846.81PPM-type phosphatase domain-containing protein n=2... [more]
A0A8K1FKV9_PYTOL1.080e-751.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YXK3_9STRA1.440e-744.68Protein phosphatase 2C n=1 Tax=Achlya hypogyna Tax... [more]
A0A6G0WXM2_9STRA1.440e-746.67PPM-type phosphatase domain-containing protein n=1... [more]
A0A484DUJ2_BRELC1.490e-750.00PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8096contigL-elsbetiae_contig8096:5215..8531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size236
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8096.17088.1prot_L-elsbetiae_contig8096.17088.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8096 5281..8526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.2259822-UTR-L-elsbetiae_contig8096:5214..52801622816894.2259822-UTR-L-elsbetiae_contig8096:5214..5280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8096 5215..5280 -
1691683893.3685236-UTR-L-elsbetiae_contig8096:5214..52801691683893.3685236-UTR-L-elsbetiae_contig8096:5214..5280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8096 5215..5280 -
1622816894.2635412-UTR-L-elsbetiae_contig8096:8526..85311622816894.2635412-UTR-L-elsbetiae_contig8096:8526..8531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8096 8527..8531 -
1691683893.4113002-UTR-L-elsbetiae_contig8096:8526..85311691683893.4113002-UTR-L-elsbetiae_contig8096:8526..8531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8096 8527..8531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.2396863-CDS-L-elsbetiae_contig8096:5280..52951622816894.2396863-CDS-L-elsbetiae_contig8096:5280..5295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8096 5281..5295 -
1691683893.3818545-CDS-L-elsbetiae_contig8096:5280..52951691683893.3818545-CDS-L-elsbetiae_contig8096:5280..5295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8096 5281..5295 -
1622816894.2522693-CDS-L-elsbetiae_contig8096:8376..85261622816894.2522693-CDS-L-elsbetiae_contig8096:8376..8526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8096 8377..8526 -
1691683893.3989065-CDS-L-elsbetiae_contig8096:8376..85261691683893.3989065-CDS-L-elsbetiae_contig8096:8376..8526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8096 8377..8526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8096.17088.1

>prot_L-elsbetiae_contig8096.17088.1 ID=prot_L-elsbetiae_contig8096.17088.1|Name=mRNA_L-elsbetiae_contig8096.17088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MSSRILPRSLLPSWMDFRKKKQASSFAITSHTPSHASMTNSSEREPIVKQ
LPQA*
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mRNA from alignment at L-elsbetiae_contig8096:5215..8531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8096.17088.1 ID=mRNA_L-elsbetiae_contig8096.17088.1|Name=mRNA_L-elsbetiae_contig8096.17088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3317bp|location=Sequence derived from alignment at L-elsbetiae_contig8096:5215..8531- (Laminarionema elsbetiae ELsaHSoW15)
CCTCCATGTCTTCAAGAATCTTGCCGAGGTCCCTATTGCCTTCCTGGATG
GACTTCCGCAAGAAAAAGCAGGCCTCGTCATTCGCCATCACGTCCCACAC
ACCGTCACACGCCAGCATGACGAATTCATCTGAACGAGAACCAATCGTGA
AGCAGGTGCAGTGTGGGAGTTGAGGGGGGGGATAAGGAAGATTACTTCAC
GTACACATAGATAGAAACATAGCGAAGTGTATAAATGTCTGAATGTTGCT
GATCCTTTGTGTCCTTTTTTATATTTTCAGTATACTCTTTTTAGGGTAAG
GTAGCCTGTGACCACGGGAATCGACCGCGTCAAGTGTTTTGGATTAGTAC
TGGCAAAATGAGGTATTTACTGGGTAGCGAGAGAGATCGGACCGGTTTGA
ATGTGAAGACAACAACGACGACAACAACGACAACAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAATAACAACAACAACAACAACGGCAAA
CTGGCCGTGAGCCGGCATCTGCCTAAACCAGCTTTTCTCTGTTCTTTGTC
AGAGCGTTCACGTGGCCGTGTGTCGCGAGGTTGCAGCGCCGGAAGAGATA
TGTGCATACTTCTACATATGCGAAAGGAAGAGGTGCTTGCACTATTTGTT
ACTGACGTACTGTCCTCACTTACTACCTACACTAATTTACCGTAAGCGCC
TACCTGCGTCGCTTCGCGTTATCACCATGACCTCCGGGTCGCATACCACC
ATCTGCCTCTCTAAGGGAAGCTTGGGGTCCGACTTGAAGGGGTGGTCGCC
GATGCACCTGTACATGGCGTTTTGTGCAGTATGTAGTTGGGAACCGATTT
GATTGGTTTGTCTCTTGGGAGTGATTCACACGCCCCGCCAAAGTATGTAG
GGGGTGACACATCAATGTCATGCATACGAAGTACGGTACCTGGTCGCCGC
CAAGGCGTGAATGTACCGGTATCTATACCAAACGCGCGATGACCGCAAGT
GAGTATGTAAAACTAATCGTTATATAGACATGTCGAAGGCAATACCACAT
CGGCCGGGCAATGGGGCACACTTCTTCATTGACGTGATCTATCAGTCACA
ATTAGCTTCTACGCAGAATTGGAATTGGGATAAGTAGATGGATGCCTGTC
GTCAAGATGCAGCTGGTCTGACCGTAAGCCCCCTCTTCCGCCATCAGGGC
GGGGGGCACATTGACTCGAACGAGCGATAATCTTCAATGGGCTACCGTGG
AGACCAGCAATGTTGGAGGCACCCCAGTGGCTCCTTTTCCCTAGGCTTCG
CTGGAATCTGCTTTTCCGATTTCCATCACCGACTTTGCTCTATTGACATC
GCCCTATCGGCCAGAGGCTGCGTACCCTGGAGACCTCAAGCTCAAGCGGT
CATGAGCACGACAGGTGGCGATACTGAAGAAAGCCTGCTGAACCTTCAAA
GACCCACCGACCGGCAGACATAGGAAAATGCGGCCCCAATGTATTTCCCG
CCGAAGCGCGGGAGAGCTCGAAAGTGATTAAGACCAGACTTTCTCGCTCC
TGCTTCCCCGGCAGACAGCTAATTTGAAGAAGTACCTAGTCTATACCAAC
TCTCCTCCATATTTGGCTTGCATTTTCCCTTTGACCCGGTTATTATCCAC
CGACCACAAAATGTATGTGGTTGGACGCGGGGGTTCCGCGTACTGGCGTG
ACGCAAACCGTTGGCTGGTCTCGACAACATTTAAGTAACGACTGACCAAA
CGTAATTTTGGCGGACCCCGCAGTAGTACCTGGATACGGCCAGCTTCCCC
TCGACGCGGTTGTGCTCCACTTTGCCCCCCGCCGCCTCGATCCTGCGACA
ACATCACAACATCGCAACATCGCAACATCGAATCAACAACGGCATGTTCA
GGGACTAGACCACTCAGCCACGAGGCAAAAGGTCACCAAAGTTCCAGGAC
GATGGTACATCTTATAACAAGCAGCCAAGTAGCGGCGAAAGGAAAAGAAA
GGTGCGGCGCTTGAGGTGGGTAGACCTGTTTTGGCTTCGTTTTGTTTTGT
GTCGTTACACACGGGGCAATGACGAAGGGGCCCGAAAAAAGTCGCAATCA
AAATGGCACACAGAACGTATGTGTTGATGCTATATATGGTCTGTCTGCCC
ATGGCCGACCAACCTCACACAACTTCAAAATTAAGCCAACCTTCAGAATG
AGGAACATTTGTTTTGTCTTACACACGGCTTTCTAAAAAGTTTTTTTCGA
TACCAGCCCACCCCCACCTGCATCATACCTCGCGGGTACTAGACCAATAG
TCTTCACAAACTCTCTTGCACAGCCGAGTTCACGAGCTTTTAGGCAAAAC
AAAAGAAATGGATATTAATATTTACCTTGGGGGGCTGACGTCTCTGGCGT
AAAGTGGTGTTCTAGAGAGACCTCCTTATTCCCAAGCATTATGGAATTGT
ACATATTAGGTGTTCTAGAGGGGTACCTCGCAGACAGGGATCCTTGGAGC
ATGCTTGATGCACGAGTATCGATAGGATCGGTGGCTTGAGGAAAGCTCTG
AAGGCACCGATCCCCCCACCGATCGACCGGCCGCACCTTTGTCTCTCGGC
CCGGTTCTCGGGCTTGTGGTCACTAGACAGCGGCCGCGATGCCCCCTCAG
AGGCCAGAACCGCCCTACAAACAAGGGAGCGGTAGATGCGGAAGGCTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGCTTCAACTTGAA
GCTTCCTGATCGGCGGTGTCCAGGAACGAACGGCAATCGACTCCATACCG
GGCCGAGTTGGCTAGGGCAGTTCGTCGTTCGTCGGTCGTGTCTCATCATT
TAAAGGAAACCTTTGAAAACGCGTTGCTTCGGGAGGCGACCCCCAAACAC
TGGCTAATTCGAACGAGATTTCGACAAAATAATTTAATAGCAAGGGACAA
GACCGCTCACCCCCCCCCTATTGACATATTTTCGTGGCGGGCTTTCGGGA
ATATCTACGGAGCCCCCCTGGCCCTTTAACTTGTGTGCCCAACGCGGCTG
ATGGTTCACGCGCCGAAAACCCAAGGTTTTACCTGGAGTCACCGGTGTTG
CAGCAGATCACGTGGAGGTCCGACACCAGCACAATCAGCGACGTTGTACC
GCAAGTGGAAAATACACCAAGGCTCCCCTCTCTTTCGTCTGCCGCGTTAC
TACTGCTGCGGCTGCCGTTGTTGACGTTTTCCACAGCTGCCGCAGGCTTG
ATACCGCTGTCAGTGGTCCTGTTCTTCTCCGCCTCCTTTTCCTCCCGTGG
ATCGATAGGTCCGGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8096:5215..8531-

>mRNA_L-elsbetiae_contig8096.17088.1 ID=mRNA_L-elsbetiae_contig8096.17088.1|Name=mRNA_L-elsbetiae_contig8096.17088.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig8096:5215..8531- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCAAGAATCTTGCCGAGGTCCCTATTGCCTTCCTGGATGGACTT
CCGCAAGAAAAAGCAGGCCTCGTCATTCGCCATCACGTCCCACACACCGT
CACACGCCAGCATGACGAATTCATCTGAACGAGAACCAATCGTGAAGCAG
ATGTCTTCAAGAATCTTGCCGAGGTCCCTATTGCCTTCCTGGATGGACTT
CCGCAAGAAAAAGCAGGCCTCGTCATTCGCCATCACGTCCCACACACCGT
CACACGCCAGCATGACGAATTCATCTGAACGAGAACCAATCGTGAAGCAG
CTGCCGCAGGCTTGACTGCCGCAGGCTTGA
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