mRNA_L-elsbetiae_contig8092.17086.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8092.17086.1
Unique NamemRNA_L-elsbetiae_contig8092.17086.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8092.17086.1 vs. uniprot
Match: D7FWP5_ECTSI (Arrestin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.890e-38
Identity = 90/260 (34.62%), Postives = 129/260 (49.62%), Query Frame = 2 
Query:   17 ECFSHEVQLASFDGNAASGVHSFPFSILLPAGLPPSVK----------------------------------------------------------VRRCESFRRSMTMMGFRMERSVAGVNEPIGLTVAARNVSSSRVNKRTTQLQQECNWRARGHRAKKDQTLASILVLPGSELEGLQWVPGTENDRGQSVVPVEENPSNDLQ*QLAAGAGTRFQLVVPGNSLPTFGEENITVTHSVGVVLDTPCCIAEPSVWIELCV 622
            E  S++VQLA+F G AASG HSFPF ++LP GLPPS++                                                          V++   F+     +GF+ + S  G+NE +GLTV ARN SS+ V     +++Q   W ARG++  K +T+A+++V PG++L   +      N RG+S   + +    DLQ QL AGAGT + L+VPGNSL T   + I V H++ V+L TP CI+ P VW  L V
Sbjct:   81 EFLSYDVQLAAFGGKAASGSHSFPFQVMLPPGLPPSMEENGSQGGSCEIFYGFEARLHRPGMLHFDAKGKAKLTVLSKPHEAGAATPVLVGPATQTVKKFCCFKSGSMSIGFQADHSEVGLNETVGLTVVARNDSSAEVKTMHVEIKQVSTWFARGYKESKTRTVAAVVV-PGTQLRASE----KGNQRGRSSAVIADTARADLQEQLGAGAGTHYDLLVPGNSLLTLQADLIEVKHTLSVMLKTPHCISSPDVWTPLLV 335
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BLAST of mRNA_L-elsbetiae_contig8092.17086.1 vs. uniprot
Match: D7FWP7_ECTSI (Arrestin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWP7_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.310e-6
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:    2 ANET*ECFSHEVQLASFDGNAASGVHSFPFSILLPAGLPPSVKV 133
            A E  E  S++VQL SF G AASGVH+F FS+ LPAGLPPS+ V
Sbjct:   67 AREDKEILSYDVQLGSFGGKAASGVHNFLFSVTLPAGLPPSMTV 110
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8092.17086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWP5_ECTSI4.890e-3834.62Arrestin_N domain-containing protein n=2 Tax=Ectoc... [more]
D7FWP7_ECTSI1.310e-663.64Arrestin_N domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8092contigL-elsbetiae_contig8092:3502..4799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-06_001450.2
Exons2
Model size652
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8092.17086.1prot_L-elsbetiae_contig8092.17086.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8092 4308..4607 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.0425608-UTR-L-elsbetiae_contig8092:3501..36601622816894.0425608-UTR-L-elsbetiae_contig8092:3501..3660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8092 3502..3660 +
1691683893.2030172-UTR-L-elsbetiae_contig8092:3501..36601691683893.2030172-UTR-L-elsbetiae_contig8092:3501..3660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8092 3502..3660 +
1622816894.0557773-UTR-L-elsbetiae_contig8092:4306..43071622816894.0557773-UTR-L-elsbetiae_contig8092:4306..4307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8092 4307..4307 +
1691683893.2180822-UTR-L-elsbetiae_contig8092:4306..43071691683893.2180822-UTR-L-elsbetiae_contig8092:4306..4307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8092 4307..4307 +
1622816894.0842927-UTR-L-elsbetiae_contig8092:4607..47991622816894.0842927-UTR-L-elsbetiae_contig8092:4607..4799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8092 4608..4799 +
1691683893.2396996-UTR-L-elsbetiae_contig8092:4607..47991691683893.2396996-UTR-L-elsbetiae_contig8092:4607..4799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8092 4608..4799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816894.0703042-CDS-L-elsbetiae_contig8092:4307..46071622816894.0703042-CDS-L-elsbetiae_contig8092:4307..4607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8092 4308..4607 +
1691683893.2297478-CDS-L-elsbetiae_contig8092:4307..46071691683893.2297478-CDS-L-elsbetiae_contig8092:4307..4607Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8092 4308..4607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8092.17086.1

>prot_L-elsbetiae_contig8092.17086.1 ID=prot_L-elsbetiae_contig8092.17086.1|Name=mRNA_L-elsbetiae_contig8092.17086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MTMMGFRMERSVAGVNEPIGLTVAARNVSSSRVNKRTTQLQQECNWRARG
HRAKKDQTLASILVLPGSELEGLQWVPGTENDRGQSVVPVEENPSNDLQ*
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mRNA from alignment at L-elsbetiae_contig8092:3502..4799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8092.17086.1 ID=mRNA_L-elsbetiae_contig8092.17086.1|Name=mRNA_L-elsbetiae_contig8092.17086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1298bp|location=Sequence derived from alignment at L-elsbetiae_contig8092:3502..4799+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAATGAAACCTAGGAGTGTTTCTCTCACGAGGTCCAACTGGCGTCCT
TCGATGGGAATGCAGCCAGTGGGGTGCACAGCTTCCCTTTCTCAATATTG
CTTCCTGCGGGCTTGCCGCCATCTGTCAAAGTGCGGCGGTGTGAATCGTT
CCGCCGAAGGTATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTT
CGTCCCATTTATTCCGGCGTCTGTCACATTTCGGAGTTTTCAGTGTACCT
TGCTACACCTTCTTGCAGTTCTGCATACTGTTTTTTTTTTCGGCCATACA
TACTACGCTGTCCGCATTTCTTCGTGCGTTATTATTTGGGAAGGAAATCA
TTGGAGGGTCGAGCTGCTCCATCCAGTATCACTTCAACGCGCACCTCCAC
CGTTCTGGGCTTTTCAACTTCGACGAAAAGGGATCGTTCGTCTTGAAAGT
TTTGGGTACACCGCAGCCCTCTGGCGTCGCTGTGCCCGTGATGGCAAGAC
CTGTAACGCGGCCCGTGAAGTTTTGTTGGTGCTTTCGCCGCGGCAGGTCG
GTGATTCCACGTGGCGTTAGATTTTCCGTGGCCACTAGAAATTTAGATAC
ACAATAATTGATCTCCGCGCGCATGATTGATAGCATTCGAACTGGAACCA
CTCGTCTTACAATATCACCTGGGTGACCGCTGGATGCCCCCCTTGGTTAT
CTTTTGGTATTCACATGCGAAATGGATTCCAGCTTGCAGAGTGGTTCTCT
GTCCTGAAAACATTATGTGTCCCCTCGCCGCCCTGCATCCCCTCTCACGT
GCCAGCATGACCATGATGGGATTCCGTATGGAGCGCTCGGTGGCCGGGGT
CAACGAACCGATAGGACTCACCGTCGCCGCACGAAACGTCAGCTCGTCAA
GAGTGAACAAGCGCACCACCCAGCTCCAGCAAGAGTGTAACTGGAGAGCT
AGAGGCCACCGTGCCAAAAAGGACCAAACTCTTGCATCCATACTAGTGCT
GCCCGGGTCAGAGCTCGAGGGGCTTCAATGGGTGCCGGGTACAGAAAATG
ATCGTGGGCAGAGTGTTGTCCCTGTCGAGGAGAATCCTTCAAACGATCTT
CAGTAGCAACTCGCCGCTGGAGCTGGCACCCGGTTTCAGCTCGTTGTCCC
CGGCAACAGCCTGCCCACCTTTGGAGAGGAAAACATCACCGTTACCCACT
CGGTGGGTGTCGTGCTGGACACACCCTGTTGCATCGCGGAGCCGTCTGTG
TGGATAGAGTTGTGTGTGGTGCCGACGGCAGCAGCTCCGGAAGCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8092:3502..4799+

>mRNA_L-elsbetiae_contig8092.17086.1 ID=mRNA_L-elsbetiae_contig8092.17086.1|Name=mRNA_L-elsbetiae_contig8092.17086.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig8092:3502..4799+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCATGATGGGATTCCGTATGGAGCGCTCGGTGGCCGGGGTCAACGA
ACCGATAGGACTCACCGTCGCCGCACGAAACGTCAGCTCGTCAAGAGTGA
ACAAGCGCACCACCCAGCTCCAGCAAGAGTGTAACTGGAGAGCTAGAGGC
CACCGTGCCAAAAAGGACCAAACTCTTGCATCCATACTAGTGCTGCCCGG
GTCAGAGCTCGAGGGGCTTCAATGGGTGCCGGGTACAGAAAATGATCGTG
GGCAGAGTGTTGTCCCTGTCGAGGAGAATCCTTCAAACGATCTTCAGTAG
ATGACCATGATGGGATTCCGTATGGAGCGCTCGGTGGCCGGGGTCAACGA
ACCGATAGGACTCACCGTCGCCGCACGAAACGTCAGCTCGTCAAGAGTGA
ACAAGCGCACCACCCAGCTCCAGCAAGAGTGTAACTGGAGAGCTAGAGGC
CACCGTGCCAAAAAGGACCAAACTCTTGCATCCATACTAGTGCTGCCCGG
GTCAGAGCTCGAGGGGCTTCAATGGGTGCCGGGTACAGAAAATGATCGTG
GGCAGAGTGTTGTCCCTGTCGAGGAGAATCCTTCAAACGATCTTCAGTAG
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