mRNA_L-elsbetiae_contig809.17082.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig809.17082.1
Unique NamemRNA_L-elsbetiae_contig809.17082.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig809.17082.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 9.710e-116
Identity = 175/250 (70.00%), Postives = 202/250 (80.80%), Query Frame = 1 
Query:    1 MHCPWARKTRAWGYEVVRGIDEDDPLRVIRAFRFPTGLAFVDVNSQVEIDYGGYTWTQWMHEHFGDTALHIALKWKRHRAVKALLSLRPDWTIRNEAGVTSEQLVLRVYGKGMREFKDEQEREYENDAMQAEEDAMRRLLAAERAARERDRLNFLQELYAARTLGVEHEAAILLEHGRVIL--------------PREVVVGRACSSVHDPAAAA-ANGWVSHVCRELRRNRFAAQRGAMRRNVVPALSP 705
            MH  W RKTR WGYEV+RGIDEDDP RVIRAFR PTGLAFVD+N+QVEIDYGGY WTQWMH HFGDTALHIALKWKR+RAVKA+LSLRP+WTI NEAGVT+EQLVLR+YGK M  FKDEQEREYENDAM+AEE+AMR L+AAE+AAR++ RL+FL+  +AART+G++HEAAILLEHGRV++              P +       SS  D + AA ++GWV HVCRELRRNRFAA  G MRRNVVPA +P
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAILLEHGRVVITDGGKSNGNNHRHHPHDAADNTDPSSQSDTSRAADSSGWVKHVCRELRRNRFAAHLGEMRRNVVPARAP 250
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BLAST of mRNA_L-elsbetiae_contig809.17082.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.830e-34
Identity = 77/181 (42.54%), Postives = 110/181 (60.77%), Query Frame = 1 
Query:    4 HCPWARKTRA-WGYEVVRGIDEDDPLRVIRAFRFPTGLAFVDVNSQVEID-YGGYTWTQWMHEHFGDTALHIALKWKRHRAVKALLSLRPDWTIRNEAGVTSEQLVLRVYGKGMREFKDEQEREYENDAMQAEEDAMRRLLAAERAARERDRLNFLQELYAARTLGVEHEAAILLEHGRVI 540
            H    R+ R  WG++ +R ID+DDP  V+RA++ P    F DV+  V+   YG Y +TQ M  H GDTALH+ALKW++ RA KALL L   W I N  GVT+E ++++ + K M   K +QEREY   AM  E+D M  LLA E++ ++    + L++L   RT G   EA +L+  GR++
Sbjct:    3 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP----FADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAMLLMMAGRIM 179
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BLAST of mRNA_L-elsbetiae_contig809.17082.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 102 bits (253), Expect = 6.920e-23
Identity = 62/141 (43.97%), Postives = 80/141 (56.74%), Query Frame = 1 
Query:    1 MHCPWA-RKTRAWGYEVVRGIDEDDPLRVIRAFRFPTGLAFVDVNSQVEIDYGGYTWTQWMHEHFGDTALHIALKWKRHRAVKALLSLRPDWTIRNEAGVTSEQLVLRVYGKGMREFKDEQEREYENDAMQAEEDAMRRLL 420
            MH P   + T +WGYEV+RGIDEDD  RV  A R   G     +N QV  +YGGY WT  +HE++GDTA+H+A+K+ R R  + LL L PD T+ N  G T+ +L    Y K ++        E   D M AEE   RR L
Sbjct:    1 MHRPHLIQATSSWGYEVIRGIDEDDHERVTEALRSWRGKK---INIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVRAAWEEETRDRMAAEEAYERRRL 138
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BLAST of mRNA_L-elsbetiae_contig809.17082.1 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 9.470e-8
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:  157 GYTWTQWMHEHFGDTALHIALKWKRHRAVKALLSL---RPD-----------WTIRNEAGVTSEQLVLRVYGKGMREFKDEQEREYENDAMQAEEDAMRRLLAAERA 435
            GY W+ W H   GDT LH+A++WKR++A+K L  L   RPD           + +R+  G T+E LV   +G+ +     +QE++   D   AEE A +  L AE A
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQEKD---DIEAAEEAARQAALEAEAA 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig809.17082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI9.710e-11670.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA6.830e-3442.54Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK6.920e-2343.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA9.470e-836.45Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig809contigL-elsbetiae_contig809:15636..18497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size900
Cds size900
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig809.17082.1prot_L-elsbetiae_contig809.17082.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig809 15636..18497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.7489424-CDS-L-elsbetiae_contig809:15635..157731622816893.7489424-CDS-L-elsbetiae_contig809:15635..15773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig809 15636..15773 +
1691683892.933286-CDS-L-elsbetiae_contig809:15635..157731691683892.933286-CDS-L-elsbetiae_contig809:15635..15773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig809 15636..15773 +
1622816893.7609367-CDS-L-elsbetiae_contig809:17553..178281622816893.7609367-CDS-L-elsbetiae_contig809:17553..17828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig809 17554..17828 +
1691683892.944766-CDS-L-elsbetiae_contig809:17553..178281691683892.944766-CDS-L-elsbetiae_contig809:17553..17828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig809 17554..17828 +
1622816893.7727513-CDS-L-elsbetiae_contig809:18010..184971622816893.7727513-CDS-L-elsbetiae_contig809:18010..18497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig809 18011..18497 +
1691683892.957242-CDS-L-elsbetiae_contig809:18010..184971691683892.957242-CDS-L-elsbetiae_contig809:18010..18497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig809 18011..18497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig809.17082.1

>prot_L-elsbetiae_contig809.17082.1 ID=prot_L-elsbetiae_contig809.17082.1|Name=mRNA_L-elsbetiae_contig809.17082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
MHCPWARKTRAWGYEVVRGIDEDDPLRVIRAFRFPTGLAFVDVNSQVEID
YGGYTWTQWMHEHFGDTALHIALKWKRHRAVKALLSLRPDWTIRNEAGVT
SEQLVLRVYGKGMREFKDEQEREYENDAMQAEEDAMRRLLAAERAARERD
RLNFLQELYAARTLGVEHEAAILLEHGRVILPREVVVGRACSSVHDPAAA
AANGWVSHVCRELRRNRFAAQRGAMRRNVVPALSPRPTTAVGSGGATGAR
AGASSFSPPPTTAGSVRSRAGTKKTSSGNCHRSPISANGVRASSRQRKT*
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mRNA from alignment at L-elsbetiae_contig809:15636..18497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig809.17082.1 ID=mRNA_L-elsbetiae_contig809.17082.1|Name=mRNA_L-elsbetiae_contig809.17082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2862bp|location=Sequence derived from alignment at L-elsbetiae_contig809:15636..18497+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTGCCCTTGGGCCCGTAAGACTCGAGCTTGGGGATACGAGGTGGT
TCGAGGGATCGACGAAGATGATCCTCTGCGCGTCATTCGAGCCTTCAGGT
TCCCGACTGGGCTGGCTTTCGTTGATGTCAACTCACAGGTACACTGCTTG
TTGGCAGATCCAGATCGATCCGACAGAAAGCACCCATGGATACCCCGGAT
CTACTGATGTAGACTAGTCTCTAGGTAAACAGACACATCGGTAGTAATAC
CGGCACATAGTATATATCCTTGTAGTTCACTAGTCTAGATATTAAACAGC
AGGACAGCAGTACTAGTTAGCGAATAATGACCCACACATACCCAACCCTA
CCCAACCCAACCAGCACTGACTGGCTCAATACCTTGCAGTAGTCTGACCA
ACCCACCCGCGGACCCACGGCCCCAACCCAACCCAATCCAACGCCCACCC
GCGGGCCGACGGCTCCAACCCCACTCAACCCAACTCAACCCAACTCAACC
CAACCCAACCAACACGTCCCAACCCGCGGATCCATGCACCCACCACAACA
CAACACAAACGGCACACCGTTCGTGGCTCGAGGCCATTTACACGTGGCCA
CTTTGCTCTGGCAGGGGTGCGAAATGCCACAGGATTAATCCCAACCTTCT
TGGAGAGCATAGTGGCAACGTCTGGAATCTATGATGACCCCAATACGCTG
TGGTAGTGCAGCTCCTCGTAGAGCCGACAGCAACAGTGTTGACGAAGAAA
GTCGTCAACCCTGAGGTACTCACTCCTCTACAGAGGGCCGAATCCTCTAC
AGGGCTCATATTTCCTGTGCCCTGGCAGGGGTGCGAAAAGCTACAGGGTT
CATGTAACCCCAACTCTGTGGCTGAGCAAAGTGGCCACGTGTGTTTTCTC
GCACGCGCACACCGCGGCGCGTGCGTTTTTTGGAATGTTATCCTTCTGTG
TTGTCAGTACCATGTCACCCCTCCATGACCAGTAAACTCATGCTACCCTT
CCCCCGCCAGCGTTTTCTTGCTCCTTCATCCTCGTAGCGTACGTGCTGTG
TTTGTTACCTCTCTCGGTTGTTTCAATACTCTGCCTCAATCTCGGCGGGC
TTGGCGGGACTGTCAATAATACATGATCTCCGGCTAGCATGCCTTTTTCA
TGTGAAACTCGGGGTTTGCTCTTACGTAGCCCGGGTCTCCGAAAAAAATA
TTTACAAACGACCGTGAAGCATGGTCATCTCTTGTCGGAGCATAACTCTA
CCGGCGTGTCAACCAAATCCCTATTTTTCTTCCCCCTCAGAAGGCAATAG
ATCGTCAATCGGTGCTCTATGGATGTTGTTCTGATCAAAAAGGAGGGCGA
GTTTGGTCGCCCGGTAATCAAGTTTGGGGGCGCTACACGCGAGCGGGGTA
ACTTTGCCCGATATTTAAAGCTTTTTTTTTCCCTCCTGGGGGATGAAGGG
AAAAAAAGGTCGCGGCTTCGCCGCTCCGCGGCTCATTAAAATAAATACAT
ATTACTTGATACGGGAGAGAAGCATTTGGTCAAATTCAAAAATGGATTTT
GGCCGATGCACGGCAGCATTTATTTCCACGATCCCAGCATCCCGAGAAAA
AGAGAACTTGCAGCTGCTTGCTGATAATAGATACAGCAGTGATTGCGTAT
CTAGACTTGCAGATAACTCACCTTGGGAAGTAACTGCGTATTTATACCTT
GACAGAGCGCCGCCCTAGCAAGCTTCTCCTCCAGCTCGTAGTTGGTAGGC
CAATTGCCTAAAAGCGGCTTCAAAGATGTTCAAATACGCACGGACCTCAC
CTATCTAGACTATTGTAGCCGGGCCGTGATGCATAAAACAGTCATTTTAA
ATTGTGCGCACACCAGAAGATGGACGTACAGCAGTATACGTTTATCTATA
CACCTTACCTCGAATCAGGTGGAGATCGACTATGGAGGCTATACGTGGAC
ACAATGGATGCACGAGCATTTTGGAGACACCGCCCTCCACATTGCTCTCA
AGTGGAAGCGGCACCGCGCGGTCAAGGCGCTCTTATCGCTCCGCCCGGAC
TGGACCATCCGCAACGAGGCCGGCGTCACGTCAGAGCAGCTAGTGCTCCG
AGTGTATGGCAAAGGCATGAGGGAATTCAAAGACGAGCAGGAGAGGGAGT
ACGAAAACGATGCCATGCAAGCCGAAGAGGACGCAATGAGAAGGTGCGTA
CAGTAGGCCATGCCGGACGTTCCCAATGGTGTGCACCATTGGTATTGTTG
TCGTTCCTGTCTCCAACGCAGCAAGCTACGTACAAGCAGATTTAAAGCTG
CGCGTTTTCAGGGGAACATTCCTGTAACACGACTATCCCAACCAATACTC
CAAACACTCGCCCCTTTTCTCGCAGGCTTTTGGCCGCCGAGCGAGCGGCG
CGCGAGAGAGACCGTCTGAACTTTCTGCAAGAGCTGTACGCCGCGCGCAC
CCTGGGCGTCGAGCACGAAGCGGCCATCCTGCTCGAGCATGGGCGAGTAA
TCCTCCCTCGAGAAGTCGTTGTAGGTCGGGCCTGCAGCAGTGTTCACGAC
CCCGCCGCTGCCGCCGCCAACGGCTGGGTGTCGCACGTTTGCCGCGAGCT
GCGTCGCAATCGCTTCGCTGCGCAGCGGGGAGCGATGCGTCGAAACGTTG
TTCCCGCCCTCTCGCCGCGTCCCACCACGGCGGTTGGGAGCGGTGGGGCG
ACGGGAGCGAGGGCGGGGGCGTCATCCTTTTCGCCGCCGCCGACAACAGC
CGGGAGTGTTCGCAGCCGGGCAGGGACCAAGAAGACGAGCTCGGGGAACT
GTCACCGTTCGCCAATCAGCGCGAACGGCGTCCGGGCCTCCAGCAGGCAA
AGAAAGACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig809:15636..18497+

>mRNA_L-elsbetiae_contig809.17082.1 ID=mRNA_L-elsbetiae_contig809.17082.1|Name=mRNA_L-elsbetiae_contig809.17082.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig809:15636..18497+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTGCCCTTGGGCCCGTAAGACTCGAGCTTGGGGATACGAGGTGGT
TCGAGGGATCGACGAAGATGATCCTCTGCGCGTCATTCGAGCCTTCAGGT
TCCCGACTGGGCTGGCTTTCGTTGATGTCAACTCACAGATGCATTGCCCT
TGGGCCCGTAAGACTCGAGCTTGGGGATACGAGGTGGTTCGAGGGATCGA
CGAAGATGATCCTCTGCGCGTCATTCGAGCCTTCAGGTTCCCGACTGGGC
TGGCTTTCGTTGATGTCAACTCACAGGTGGAGATCGACTATGGAGGCTAT
ACGTGGACACAATGGATGCACGAGCATTTTGGAGACACCGCCCTCCACAT
TGCTCTCAAGTGGAAGCGGCACCGCGCGGTCAAGGCGCTCTTATCGCTCC
GCCCGGACTGGACCATCCGCAACGAGGCCGGCGTCACGTCAGAGCAGCTA
GTGCTCCGAGTGTATGGCAAAGGCATGAGGGAATTCAAAGACGAGCAGGA
GAGGGAGTACGAAAACGATGCCATGCAAGCCGAAGAGGACGCAATGAGAA
GGTGGAGATCGACTATGGAGGCTATACGTGGACACAATGGATGCACGAGC
ATTTTGGAGACACCGCCCTCCACATTGCTCTCAAGTGGAAGCGGCACCGC
GCGGTCAAGGCGCTCTTATCGCTCCGCCCGGACTGGACCATCCGCAACGA
GGCCGGCGTCACGTCAGAGCAGCTAGTGCTCCGAGTGTATGGCAAAGGCA
TGAGGGAATTCAAAGACGAGCAGGAGAGGGAGTACGAAAACGATGCCATG
CAAGCCGAAGAGGACGCAATGAGAAGGCTTTTGGCCGCCGAGCGAGCGGC
GCGCGAGAGAGACCGTCTGAACTTTCTGCAAGAGCTGTACGCCGCGCGCA
CCCTGGGCGTCGAGCACGAAGCGGCCATCCTGCTCGAGCATGGGCGAGTA
ATCCTCCCTCGAGAAGTCGTTGTAGGTCGGGCCTGCAGCAGTGTTCACGA
CCCCGCCGCTGCCGCCGCCAACGGCTGGGTGTCGCACGTTTGCCGCGAGC
TGCGTCGCAATCGCTTCGCTGCGCAGCGGGGAGCGATGCGTCGAAACGTT
GTTCCCGCCCTCTCGCCGCGTCCCACCACGGCGGTTGGGAGCGGTGGGGC
GACGGGAGCGAGGGCGGGGGCGTCATCCTTTTCGCCGCCGCCGACAACAG
CCGGGAGTGTTCGCAGCCGGGCAGGGACCAAGAAGACGAGCTCGGGGAAC
TGTCACCGTTCGCCAATCAGCGCGAACGGCGTCCGGGCCTCCAGCAGGCA
AAGAAAGACGTGAGCTTTTGGCCGCCGAGCGAGCGGCGCGCGAGAGAGAC
CGTCTGAACTTTCTGCAAGAGCTGTACGCCGCGCGCACCCTGGGCGTCGA
GCACGAAGCGGCCATCCTGCTCGAGCATGGGCGAGTAATCCTCCCTCGAG
AAGTCGTTGTAGGTCGGGCCTGCAGCAGTGTTCACGACCCCGCCGCTGCC
GCCGCCAACGGCTGGGTGTCGCACGTTTGCCGCGAGCTGCGTCGCAATCG
CTTCGCTGCGCAGCGGGGAGCGATGCGTCGAAACGTTGTTCCCGCCCTCT
CGCCGCGTCCCACCACGGCGGTTGGGAGCGGTGGGGCGACGGGAGCGAGG
GCGGGGGCGTCATCCTTTTCGCCGCCGCCGACAACAGCCGGGAGTGTTCG
CAGCCGGGCAGGGACCAAGAAGACGAGCTCGGGGAACTGTCACCGTTCGC
CAATCAGCGCGAACGGCGTCCGGGCCTCCAGCAGGCAAAGAAAGACGTGA
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