mRNA_L-elsbetiae_contig8087.17080.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8087.17080.1
Unique NamemRNA_L-elsbetiae_contig8087.17080.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8087.17080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8087contigL-elsbetiae_contig8087:3042..3830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8087.17080.1prot_L-elsbetiae_contig8087.17080.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8087 3086..3517 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.5155218-UTR-L-elsbetiae_contig8087:3041..30851622816893.5155218-UTR-L-elsbetiae_contig8087:3041..3085Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 3042..3085 +
1691683892.7826052-UTR-L-elsbetiae_contig8087:3041..30851691683892.7826052-UTR-L-elsbetiae_contig8087:3041..3085Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 3042..3085 +
1622816893.5368097-UTR-L-elsbetiae_contig8087:3517..38301622816893.5368097-UTR-L-elsbetiae_contig8087:3517..3830Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 3518..3830 +
1691683892.80521-UTR-L-elsbetiae_contig8087:3517..38301691683892.80521-UTR-L-elsbetiae_contig8087:3517..3830Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 3518..3830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.526176-CDS-L-elsbetiae_contig8087:3085..35171622816893.526176-CDS-L-elsbetiae_contig8087:3085..3517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 3086..3517 +
1691683892.7943578-CDS-L-elsbetiae_contig8087:3085..35171691683892.7943578-CDS-L-elsbetiae_contig8087:3085..3517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 3086..3517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8087.17080.1

>prot_L-elsbetiae_contig8087.17080.1 ID=prot_L-elsbetiae_contig8087.17080.1|Name=mRNA_L-elsbetiae_contig8087.17080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MHAESREVKPKAKRTSRVKDAQDTASAISQTLIQDISPILAGASSTLSAS
SKWNEETDKTESEAATLGLSCQRNKAHKEFSAELREMGAGEGGCFRARFL
KYELQKLEAAMLPPEPTTAAEAEVVRAVSGTGASESGAGSGPV*
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mRNA from alignment at L-elsbetiae_contig8087:3042..3830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8087.17080.1 ID=mRNA_L-elsbetiae_contig8087.17080.1|Name=mRNA_L-elsbetiae_contig8087.17080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=789bp|location=Sequence derived from alignment at L-elsbetiae_contig8087:3042..3830+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCGGTGGCCGCCGAGCAGTCGCAAAGCGCAAGGGGCGGCAGATGCAC
GCCGAGAGCCGAGAGGTCAAGCCCAAGGCGAAAAGGACCTCGAGGGTGAA
GGACGCGCAAGACACCGCCAGCGCAATCTCTCAAACGCTGATCCAAGACA
TATCGCCCATCTTGGCCGGGGCCTCCAGCACCCTCAGCGCCAGCTCGAAG
TGGAACGAAGAAACGGACAAGACCGAGAGCGAGGCTGCTACGCTTGGGCT
GAGTTGTCAAAGGAACAAGGCCCACAAGGAGTTTTCGGCTGAACTGCGGG
AGATGGGTGCGGGGGAGGGGGGCTGTTTCCGCGCGAGGTTCCTCAAGTAC
GAGCTGCAGAAGCTGGAGGCGGCGATGCTGCCCCCCGAGCCTACGACTGC
CGCGGAGGCGGAGGTAGTGAGGGCAGTCTCGGGAACAGGGGCGAGCGAAA
GCGGAGCGGGTTCTGGGCCAGTGTAAGGGTGACATTGGTCCTCACGTCTT
TGAGGCATGCCTACCGTGTTTTATTTTTTATTGTGAGTATAGCATGCGAT
GAAAGAGGCACGGCCTGTGTTTGTTGGCTCGACGGGCGGAGAGCTATGCC
ATTTTGGTCCTTGTTGTCTCGCTATGGAACCCCTTTCGTTTTTTTCGAGC
CCGTATGGGATGGAAGGGGGGGAGGCGCGGGTGGATGAAACGCAGTGCGT
GCAGCGGGGGGATCGCTTTCGGCTCTCCCTGCCCTCTATTTAGGTGTCGC
CAGTGAAAACATGTTCGGGAATATAGGTCACCTCTTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8087:3042..3830+

>mRNA_L-elsbetiae_contig8087.17080.1 ID=mRNA_L-elsbetiae_contig8087.17080.1|Name=mRNA_L-elsbetiae_contig8087.17080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig8087:3042..3830+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGCCGAGAGCCGAGAGGTCAAGCCCAAGGCGAAAAGGACCTCGAG
GGTGAAGGACGCGCAAGACACCGCCAGCGCAATCTCTCAAACGCTGATCC
AAGACATATCGCCCATCTTGGCCGGGGCCTCCAGCACCCTCAGCGCCAGC
TCGAAGTGGAACGAAGAAACGGACAAGACCGAGAGCGAGGCTGCTACGCT
TGGGCTGAGTTGTCAAAGGAACAAGGCCCACAAGGAGTTTTCGGCTGAAC
TGCGGGAGATGGGTGCGGGGGAGGGGGGCTGTTTCCGCGCGAGGTTCCTC
AAGTACGAGCTGCAGAAGCTGGAGGCGGCGATGCTGCCCCCCGAGCCTAC
GACTGCCGCGGAGGCGGAGGTAGTGAGGGCAGTCTCGGGAACAGGGGCGA
GCGAAAGCGGAGCGGGTTCTGGGCCAGTGTAAATGCACGCCGAGAGCCGA
GAGGTCAAGCCCAAGGCGAAAAGGACCTCGAGGGTGAAGGACGCGCAAGA
CACCGCCAGCGCAATCTCTCAAACGCTGATCCAAGACATATCGCCCATCT
TGGCCGGGGCCTCCAGCACCCTCAGCGCCAGCTCGAAGTGGAACGAAGAA
ACGGACAAGACCGAGAGCGAGGCTGCTACGCTTGGGCTGAGTTGTCAAAG
GAACAAGGCCCACAAGGAGTTTTCGGCTGAACTGCGGGAGATGGGTGCGG
GGGAGGGGGGCTGTTTCCGCGCGAGGTTCCTCAAGTACGAGCTGCAGAAG
CTGGAGGCGGCGATGCTGCCCCCCGAGCCTACGACTGCCGCGGAGGCGGA
GGTAGTGAGGGCAGTCTCGGGAACAGGGGCGAGCGAAAGCGGAGCGGGTT
CTGGGCCAGTGTAA
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