mRNA_L-elsbetiae_contig8087.17079.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8087.17079.1
Unique NamemRNA_L-elsbetiae_contig8087.17079.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8087.17079.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.450e-20
Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 2 
Query:  152 FTDDTRVLPRVSNDDFVGHTDPNILSQPNITVKKLKEMYGSLRTKFNPCYARKTGSESGTHHPWEDFCQSDADIFLMGELVATFPELLQIIDQALPEDLQREDDGTG 472
            F D    + ++ +D+ V H +PNI+ QPNI+ +K+ +M+ + + K+N   A    SESG + PW  FCQ D D +++G  +  +PEL Q+ +  LPED QREDDGTG
Sbjct:   93 FRDPRHNVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPIANWK-SESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTG 198
[Close]
BLAST of mRNA_L-elsbetiae_contig8087.17079.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.770e-19
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 2 
Query:  131 LAAPASDFTDDTRVLPRVSNDD-FVGHTDPNILSQPNITVKKLKEMYGSLRTKFNPCYARKTGSESGTHHPWEDFCQSDADIFLMGELVATFPELLQIIDQALPEDLQREDDGTG 472
            L    +D   D R   R+S DD  V H +PNI+ QPNI+ +K+ +M+ + + K+N   A     ESG + PW  FCQ D D +++G  +  +PEL Q+ +  LPED QREDDGTG
Sbjct:  249 LWTEVTDRFRDPRHNVRISVDDELVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWK-RESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTG 362
[Close]
BLAST of mRNA_L-elsbetiae_contig8087.17079.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.030e-18
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:  152 FTDDTRVLPRVSNDDFVGHTDPNILSQPNITVKKLKEMYGSLRTKFNPCYARKTGSESGTHHPWEDFCQSDADIFLMGELVATFPELLQIIDQALPEDLQREDDGTG 472
            F D    + ++ +D+   H +PNI+ QP+I  +K+ + + + + K+N   A    SESG + PW  FCQ D D +++G  +  +PEL Q+ +  LPED QREDDGTG
Sbjct:  787 FRDPRHNVRKIVDDEQASHVNPNIIQQPDIFAEKITKTWSAAKAKWNTPNANWKKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTG 893
[Close]
BLAST of mRNA_L-elsbetiae_contig8087.17079.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.890e-17
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 2 
Query:  152 FTDDTRVLPRVSNDDFVGHTDPNILSQPNITVKKLKEMYGSLRTKFNPCYARKTGSESGTHHPWEDFCQSDADIFLMGELVATFPELLQIIDQALPEDLQREDDGTG 472
            F D    + ++ +D  V H +PNI+ QPN + +K+   + + R  +N  YA  T SESG + PW  F Q D D +++G     +PEL Q+ +  LPED QREDDGTG
Sbjct:  388 FRDRGHNVRKIVDDGQVSHVNPNIIQQPNRSAEKITNTWSAARANWNTPYANWT-SESGNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTG 493
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8087.17079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JXZ6_9PHAE1.450e-2042.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNY9_9PHAE5.770e-1942.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNM0_9PHAE1.030e-1839.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSN7_9PHAE2.890e-1741.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8087contigL-elsbetiae_contig8087:782..2966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size528
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8087.17079.1prot_L-elsbetiae_contig8087.17079.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8087 881..2801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.440559-UTR-L-elsbetiae_contig8087:781..8801622816893.440559-UTR-L-elsbetiae_contig8087:781..880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 782..880 +
1691683892.726516-UTR-L-elsbetiae_contig8087:781..8801691683892.726516-UTR-L-elsbetiae_contig8087:781..880Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 782..880 +
1622816893.4856322-UTR-L-elsbetiae_contig8087:2801..29661622816893.4856322-UTR-L-elsbetiae_contig8087:2801..2966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 2802..2966 +
1691683892.7722127-UTR-L-elsbetiae_contig8087:2801..29661691683892.7722127-UTR-L-elsbetiae_contig8087:2801..2966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8087 2802..2966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.4529042-CDS-L-elsbetiae_contig8087:880..9531622816893.4529042-CDS-L-elsbetiae_contig8087:880..953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 881..953 +
1691683892.7388668-CDS-L-elsbetiae_contig8087:880..9531691683892.7388668-CDS-L-elsbetiae_contig8087:880..953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 881..953 +
1622816893.4650688-CDS-L-elsbetiae_contig8087:1297..14841622816893.4650688-CDS-L-elsbetiae_contig8087:1297..1484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 1298..1484 +
1691683892.751711-CDS-L-elsbetiae_contig8087:1297..14841691683892.751711-CDS-L-elsbetiae_contig8087:1297..1484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 1298..1484 +
1622816893.4754698-CDS-L-elsbetiae_contig8087:2797..28011622816893.4754698-CDS-L-elsbetiae_contig8087:2797..2801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 2798..2801 +
1691683892.7612379-CDS-L-elsbetiae_contig8087:2797..28011691683892.7612379-CDS-L-elsbetiae_contig8087:2797..2801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8087 2798..2801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8087.17079.1

>prot_L-elsbetiae_contig8087.17079.1 ID=prot_L-elsbetiae_contig8087.17079.1|Name=mRNA_L-elsbetiae_contig8087.17079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MLVRSDPATGLGSACIRLHGRHQSASTCVERRLRRTHGPQHPQPAQHHGQ
EAQGDVRLSADEVQPLLRAQDWFRIGHTPPLGRFLPK*
back to top

mRNA from alignment at L-elsbetiae_contig8087:782..2966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8087.17079.1 ID=mRNA_L-elsbetiae_contig8087.17079.1|Name=mRNA_L-elsbetiae_contig8087.17079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2185bp|location=Sequence derived from alignment at L-elsbetiae_contig8087:782..2966+ (Laminarionema elsbetiae ELsaHSoW15)
CGATGCACTGCGTTCATCGTCTGCTGGCCTGCATGCAGTTAGACGAGCAC
CGGACAGACATGATCCGCTGTGGACAGCAGGCGACCCGGGCACAGCTGGA
TGCTGGTGAGGTCGGACCCGGCCACGGGGCTTGGCAGCGCCTGCATCAGA
CTTCACGGACGACACCAGAGTGGTAAGAGTCGGGGGGCGAGTGGCAGTCA
TGTATTTTGCATTTGTTGTTGTAAACGTGTTGGGTGCTAGTGTAATGGCC
TCACGTATACCCAGTTTATCGCACTGACAAAACGTGCAGCAGCCTAAAAC
CCGCACGGTGCGTCGAACATAAATCGTTCGACGTTTCTTTGTAAATTTGC
TAGGCACGACGTGCCCACAGTTATGAGTTTGAGATGCACCCTCGGCCGTG
TTGCGTCTATGGCAGGTGGCGTCAAAACAAATTTGCAGTACACGTTGTAT
TCAAATCGTGACTGACCTCCGCGTTTCCCGGTCGTTCGAATCCGGCCCTT
TCTTATTTCGCGACAGCTTCCACGTGTGTCGAACGACGACTTCGTAGGAC
ACACGGACCCCAACATCCTCAGCCAGCCCAACATCACGGTCAAGAAGCTC
AAGGAGATGTACGGCTCTCTGCGGACGAAGTTCAACCCTTGCTACGCGCG
CAAGACTGGTTCCGAATCGGGCACACACCACCCCTGGGAAGATTTCTGCC
AAAGTAAGTCAGTGCATTTTGAAGGAAATATTTATTTACTTCCATATGGG
GCGAGGATGGGGGTCCTGTATTTGGATGGCATGTACTATTTAGAACCCTG
GGATCGGGGGAGGTTTTTTGCAGTGATGTACATATCCGGGTACCGGATAT
ATCCGGATACAGGTTTCAGCGGTAGGTAGGTACCCTGGGAATTCCCGTAT
ATTTTACAGATATCTGGGGGCCCCTCAGTTGGGTTGGGGGGTAACACAAG
CGCGGAACCCCCTCACGCTACAGTAGTGCTAGCAGGCTTCTTTGTTTCTT
CTCTTTCTGTTTCTCGTCGGCCTTTCGAAGCAAAGACGTTTGCTTCGTGT
TTCCCGCTCTCTCGTTTTGTTTTTGTTTTCACGGTTTTGTCATGTGCAGG
AGTATAGACTACTTGACCGGAATTAAAAAAAAAATAATCGTCGCATCACG
AGGTCGCGTTGTAACATTGCAGCAACATTGCCAATGCAACGATAGACAGG
CTGCAGCAGCATGAGCAGTCACAGCAAACACGCGGTACACACTACATCAC
CGTGAGTAGACAGCGAGCTTCTTCCGAACGGCCAAAATATCTGAAGTATA
CGTTGTATACCACCCCGGGGACGGGAATTTTTGGTCCCTGGTCACAGCGG
ATATATCCGGTCAGTACCCTGCTCGAACCCCGGATATGTACATCACTGTT
TTTTTCGCGCTTGGTCACAACAGCATAACCCGTGACGCGAAAAGTACCTG
CAGTAGGCTGGGTTGTCCTAAAAAAAATGACCCCTCCCCCCCCGTACATC
CCATTTGTGTGTTTGCACATTCCTCGCTGAAAACTTTTTGCGAGCCCCCC
TTTTTTCTCCCGGCTCCGCCGCTCCTTGACGAAGGCGCACTCACATGTCA
TCACAGCTGTAGTACACCGCACAGAGCAACGCCAGACCCCTACATACTGC
AACCGAAACTGATAGTACCACACATATATATGTAGGATTGGCACTTTTTT
AGCCATGAAGAGGTGTGCAGCCAGGGCAAACACGAACGAACGAACGAACA
GCCATTTCCGAAGCGTTGTTAATTTTGGGGTCGCAGCATCCGTTTAAAAC
AGTTTTTTCTGAAAACAAATACTCAGCTATCGCTGCATTTTTTTTCGAGC
GCTACGCGCGCGCGAAAAAAACGACTAAAACCGTCATTGCAACGTGCGGG
CGTTCTGTTTTACAATATGATGAAGTCACGGGGCTGCGCAACGGTCCCTC
CTTAACAATGTCCTTCCGAATTAATGCTACCCTTCCTGCCTCAAAACCAA
CCGAAACAAAACGTAGGTGACGCGGACATCTTCCTTATGGGAGAACTCGT
GGCCACGTTCCCGGAGCTTCTGCAGATCATCGACCAGGCCCTTCCCGAAG
ACCTGCAGCGGGAGGACGACGGCACGGGCGCTGCCGAGAGTTCCGAAGAC
GCGGGGGGCTCCGCCGGGGGCGACGGCGACGCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8087:782..2966+

>mRNA_L-elsbetiae_contig8087.17079.1 ID=mRNA_L-elsbetiae_contig8087.17079.1|Name=mRNA_L-elsbetiae_contig8087.17079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig8087:782..2966+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGTGAGGTCGGACCCGGCCACGGGGCTTGGCAGCGCCTGCATCAG
ACTTCACGGACGACACCAGAGTGATGCTGGTGAGGTCGGACCCGGCCACG
GGGCTTGGCAGCGCCTGCATCAGACTTCACGGACGACACCAGAGTGCTTC
CACGTGTGTCGAACGACGACTTCGTAGGACACACGGACCCCAACATCCTC
AGCCAGCCCAACATCACGGTCAAGAAGCTCAAGGAGATGTACGGCTCTCT
GCGGACGAAGTTCAACCCTTGCTACGCGCGCAAGACTGGTTCCGAATCGG
GCACACACCACCCCTGGGAAGATTTCTGCCAAACTTCCACGTGTGTCGAA
CGACGACTTCGTAGGACACACGGACCCCAACATCCTCAGCCAGCCCAACA
TCACGGTCAAGAAGCTCAAGGAGATGTACGGCTCTCTGCGGACGAAGTTC
AACCCTTGCTACGCGCGCAAGACTGGTTCCGAATCGGGCACACACCACCC
CTGGGAAGATTTCTGCCAAAGTGAGTGA
back to top