mRNA_L-elsbetiae_contig8084.17078.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8084.17078.1
Unique NamemRNA_L-elsbetiae_contig8084.17078.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8084.17078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8084contigL-elsbetiae_contig8084:4511..6492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8084.17078.1prot_L-elsbetiae_contig8084.17078.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8084 4533..6492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.3868368-UTR-L-elsbetiae_contig8084:4510..45321622816893.3868368-UTR-L-elsbetiae_contig8084:4510..4532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8084 4511..4532 +
1691683892.6909328-UTR-L-elsbetiae_contig8084:4510..45321691683892.6909328-UTR-L-elsbetiae_contig8084:4510..4532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8084 4511..4532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.398314-CDS-L-elsbetiae_contig8084:4532..45661622816893.398314-CDS-L-elsbetiae_contig8084:4532..4566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8084 4533..4566 +
1691683892.7025726-CDS-L-elsbetiae_contig8084:4532..45661691683892.7025726-CDS-L-elsbetiae_contig8084:4532..4566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8084 4533..4566 +
1622816893.4104095-CDS-L-elsbetiae_contig8084:6274..64921622816893.4104095-CDS-L-elsbetiae_contig8084:6274..6492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8084 6275..6492 +
1691683892.7158418-CDS-L-elsbetiae_contig8084:6274..64921691683892.7158418-CDS-L-elsbetiae_contig8084:6274..6492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8084 6275..6492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8084.17078.1

>prot_L-elsbetiae_contig8084.17078.1 ID=prot_L-elsbetiae_contig8084.17078.1|Name=mRNA_L-elsbetiae_contig8084.17078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MPVQPRSSRSSSCCWCWCPRPRPRSRSRGEQQRPAADEHDRGGKVLVPSV
ERCCGGSCGGGLGKETKLRRWGTTTAADNDNDND
back to top

mRNA from alignment at L-elsbetiae_contig8084:4511..6492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8084.17078.1 ID=mRNA_L-elsbetiae_contig8084.17078.1|Name=mRNA_L-elsbetiae_contig8084.17078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1982bp|location=Sequence derived from alignment at L-elsbetiae_contig8084:4511..6492+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCTGCCATCCTGCGCCAGAATGCCGGTGCAGCCAAGAAGCAGCCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCGCCCAGTAGCTGCAGCAAGAGGTGGATCCGCCGCC
AAGACAGGTGGCAGCGGCAGCAGAGGCGTGAACGCGGCCGGTACCTCCGC
GCTCAAGGGTGCCCTTGGCATCGGTGGCGAGGTCACCGGTAGACCGGCCC
CGCCACCGCCGCCGCCACCGCCGCCACCGGCGCCGTCGACGTCTTCCACG
GCGGCCGCGGCGGGGGCAATGCTGAAGGGCATGCTTGGGGTAGGAGGTGG
GGCAACGACGGTGGCGAGGCCTGTGCCAGCAGCAGCGGCGGCGGCGGCGG
CAGCAGCGGGAGTGGGAGTGGGAGTGGGGGCGAAGGTCGCGACACCGGCA
GAAACCGCAGCGGTGCCGGTGTCCGGAAAAAACGCCACGGCCGACTTGAA
GGCCCTGATCGGGGTCGGATCGATGCGTCCACCGGCGGCAACGACGCCGG
CACCAGCACCAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGTAGCA
GCAGCAGCAGGACAGACATCAGTAGGCGGTGGTGGAGCGAAGCAGCAGGG
GGCGACGACGGCGGTCACCGCGGCGGCAGCGGTGCCAGCAGGGGCCGTGG
CGACGCCAAAGGAAATCAACCGCACGGCAGCCGCTAGTCGTAGCAAGGAA
GCGGCGGGTCGTGCCGACGGGAGCGACGCGACTAGGGAGGTGGGGAGGAG
GACGATTACCCCTCCCCCCACTTCGAGGGAAGGTGGCGGAGGAGGAGGGA
GCAGGAGTGTGACGCCTTCCAGGCTAGTTGGAAGCAGGTGGGTAGGTGGG
TGATGCAGTAGTCGTGGTTATGTGTGTTTATTGTTTTTTGAGGGAGAAGA
TTGTGCCTTTTTGCGTCTTGGGTAGTTGCGCCCGCCGCGGCCCCCGCAAG
GCCAGTGCAGTTGTTCGACTATTTCGCTCCCGCCGACATATGACATGAGA
TGCATACATGCGCGCCCCATGACACTACCCACTCATATTCTCGCTCTCCC
ACCCTCTCTCTCTCTCGCTCCTTTTCTTTCTCCCCCTCTCCCTCCTATTC
TCTCCCTCTCCCTGCCCCCCGTTTCTCTGTCTCTCTCCTTTCTCCCCCCC
CCCATATTTCTTCTCTGGGGCACCGCTCCGCACAGGTCAAAGCCGCTGGT
GATGAGCCCAGACGGGATCGACCGCCGAGGTGCCGCTTCGCAGTACCGAC
AGGCCAGGGGCCCCGACACTACCGGCACCGGCTTCAGGGGGGGCAGGGGG
GCCGGCGCGGGAAGGAGCGGCGGAGCAGGCGGAGACGTCACCAAGACGGC
GAGAGCGAACGGGCGCGGTCTCGCGGCTGCGGCTGCTGCCAAGCAGAAGA
GTGGGGGCTCCGCAGCCGCGGCTAAGGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTTCTGCTGCCGTCGCGCCCCCTGCGGTGAAGGGTTCTTCTGC
TGGTCGTGGTGGTGGTACGGCGGCAGGAGCGGCGGAGGGAACGCCAGAGG
CTGGGGTGGCTGAGAGGTCGCGGGGCCGGGAGCCAGCTCTCGAGGAGGCA
GGGAGGGCGGGCAAGGATGCGGGCAAGGGGGGCTCCGCGCCCTCCGACGC
GATGAAGGCGGGAGGGGCATCGCCGTCACTTCTTACCGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGGTGTTGGTGCCCCCGCCCCCGCCCCC
GCTCCCGCTCCCGCGGCGAGCAACAAAGGCCAGCAGCTGATGAACATGAT
CGGGGCGGGAAAGTCCTCGTCCCAAGCGTCGAGCGCTGCTGCGGCGGCAG
CTGCGGCGGTGGGCTCGGCAAAGAGACGAAGCTCAGGCGGTGGGGCACCA
CCACCGCCGCCGACAACGACAACGACAACGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8084:4511..6492+

>mRNA_L-elsbetiae_contig8084.17078.1 ID=mRNA_L-elsbetiae_contig8084.17078.1|Name=mRNA_L-elsbetiae_contig8084.17078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig8084:4511..6492+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGTGCAGCCAAGAAGCAGCCGCAGCAGCAATGCCGGTGCAGCCAA
GAAGCAGCCGCAGCAGCAGCTGCTGCTGGTGTTGGTGCCCCCGCCCCCGC
CCCCGCTCCCGCTCCCGCGGCGAGCAACAAAGGCCAGCAGCTGATGAACA
TGATCGGGGCGGGAAAGTCCTCGTCCCAAGCGTCGAGCGCTGCTGCGGCG
GCAGCTGCGGCGGTGGGCTCGGCAAAGAGACGAAGCTCAGGCGGTGGGGC
ACCACCACCGCCGCCGACAACGACAACGACAACGACGCTGCTGCTGGTGT
TGGTGCCCCCGCCCCCGCCCCCGCTCCCGCTCCCGCGGCGAGCAACAAAG
GCCAGCAGCTGATGAACATGATCGGGGCGGGAAAGTCCTCGTCCCAAGCG
TCGAGCGCTGCTGCGGCGGCAGCTGCGGCGGTGGGCTCGGCAAAGAGACG
AAGCTCAGGCGGTGGGGCACCACCACCGCCGCCGACAACGACAACGACAA
CGAC
back to top