mRNA_L-elsbetiae_contig808.17074.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig808.17074.1
Unique NamemRNA_L-elsbetiae_contig808.17074.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig808.17074.1 vs. uniprot
Match: D8LDC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.390e-29
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 DGNVGEFTDGEPIATIDESVLDEVQDGRDALTAASETTEESRVQVAEQLAGNGSDIVRVKFQLDRVNGNEIGDDKDVRNETLTTVIDEVLQPMRDITID 297
            DG V E  DGE IA ID  VL ++QDGRDAL  A+E TE S +++AEQL GN S I R+K+QLD V+GNEI  D+D+RN TLTTV+D+VLQPMRD+T+D
Sbjct:  257 DGPVAELMDGETIANIDGDVLHDIQDGRDALEQATELTESSSLEIAEQLTGNESAITRIKYQLDDVHGNEILGDEDIRNATLTTVLDDVLQPMRDLTVD 355
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig808.17074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDC8_ECTSI4.390e-2962.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig808contigL-elsbetiae_contig808:24629..25799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig808.17074.1prot_L-elsbetiae_contig808.17074.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig808 24629..25799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.146284-CDS-L-elsbetiae_contig808:24628..247681622816893.146284-CDS-L-elsbetiae_contig808:24628..24768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 24629..24768 +
1691683892.537613-CDS-L-elsbetiae_contig808:24628..247681691683892.537613-CDS-L-elsbetiae_contig808:24628..24768Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 24629..24768 +
1622816893.156869-CDS-L-elsbetiae_contig808:25168..252911622816893.156869-CDS-L-elsbetiae_contig808:25168..25291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 25169..25291 +
1691683892.5505261-CDS-L-elsbetiae_contig808:25168..252911691683892.5505261-CDS-L-elsbetiae_contig808:25168..25291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 25169..25291 +
1622816893.1679733-CDS-L-elsbetiae_contig808:25765..257991622816893.1679733-CDS-L-elsbetiae_contig808:25765..25799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 25766..25799 +
1691683892.5615313-CDS-L-elsbetiae_contig808:25765..257991691683892.5615313-CDS-L-elsbetiae_contig808:25765..25799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 25766..25799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig808.17074.1

>prot_L-elsbetiae_contig808.17074.1 ID=prot_L-elsbetiae_contig808.17074.1|Name=mRNA_L-elsbetiae_contig808.17074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
DGNVGEFTDGEPIATIDESVLDEVQDGRDALTAASETTEESRVQVAEQLA
GNGSDIVRVKFQLDRVNGNEIGDDKDVRNETLTTVIDEVLQPMRDITID
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mRNA from alignment at L-elsbetiae_contig808:24629..25799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig808.17074.1 ID=mRNA_L-elsbetiae_contig808.17074.1|Name=mRNA_L-elsbetiae_contig808.17074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1171bp|location=Sequence derived from alignment at L-elsbetiae_contig808:24629..25799+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGCAATGTGGGCGAATTCACCGATGGCGAGCCCATCGCCACGATCGA
CGAGAGTGTCCTCGACGAGGTTCAGGACGGAAGGGATGCCCTGACCGCGG
CGAGCGAGACGACAGAGGAATCCCGGGTGCAGGTAGCAGAGTGAGTTAGT
TATAGTTCATAGTCTATATATACGAAGTACAGTATCTAGATATATGAATA
CTGCTACTTGGGGACATTTTCAATTGTTGGTTCGGACCTTACGCGCCATG
CTTGTGGCCCGTTTTATTCCAAGGTCTTTACGCAGTGAGGGGCTATCTGT
GTACTGCAATCAATGAATGAAGCAGACAGGGCGTCATCAGAAAAGCATGG
AAGCGAAACATCCACATAATATGTAGATATGCACCGCCACCAGAGTTCAC
ATCTTATCTTGCATTATTAGTACTTGACTAGACAGATACGTACAACAATG
CTTTTGCGTTCAATACGCTAATCGTGCTTCTGCACGCCTTGTATAGCTAC
GCGTGCATACCTTACAAAACTGCGGTCTACTGCCAAGCAGGCAGCTCGCG
GGCAACGGCTCGGATATCGTCCGGGTGAAGTTCCAGCTGGACAGGGTCAA
TGGCAACGAGATCGGGGACGACAAGGACGTACGAAACGAGACCCTCACCA
CAGTGATCGACGAGTGAGTGGGTGGTTGATCCCCAGAAACCCCCATCATA
ATATGTTTTAAATCACTCGATCGCAGGATTCCGAAGTTGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
ATTTGTCTTTTGAAAGCAGACTCTGCAAAGAATACCCGATCTGCTTGTTT
TTTTTCCCCCCGCGGGTGGTGTACCTCCAGGCTTCGCTGGTGGGGAAGGG
GGAACAGGTTGAAAGGCTCAGGTTGGCACGCGATTCCTGCGGCAAAAAGT
GCGAAATCGCAACGACCAGCCGACCCCTCGCTCTTTAATCAACGAGGCCT
GTAATTGCCGCATCCGCGACATCTCTACCTTACTCGCACGCTGCCAGCAC
CACCAACAGCACCACAACCGCCACCCTGAAACGGCAACAGCCCCAAAAAT
GAACCACCTTTGCCTGGCCCTTGAACGATCATCACAGGGTGCTGCAGCCT
ATGCGAGATATAACTATCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig808:24629..25799+

>mRNA_L-elsbetiae_contig808.17074.1 ID=mRNA_L-elsbetiae_contig808.17074.1|Name=mRNA_L-elsbetiae_contig808.17074.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig808:24629..25799+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGCAATGTGGGCGAATTCACCGATGGCGAGCCCATCGCCACGATCGA
CGAGAGTGTCCTCGACGAGGTTCAGGACGGAAGGGATGCCCTGACCGCGG
CGAGCGAGACGACAGAGGAATCCCGGGTGCAGGTAGCAGAGACGGCAATG
TGGGCGAATTCACCGATGGCGAGCCCATCGCCACGATCGACGAGAGTGTC
CTCGACGAGGTTCAGGACGGAAGGGATGCCCTGACCGCGGCGAGCGAGAC
GACAGAGGAATCCCGGGTGCAGGTAGCAGAGCAGCTCGCGGGCAACGGCT
CGGATATCGTCCGGGTGAAGTTCCAGCTGGACAGGGTCAATGGCAACGAG
ATCGGGGACGACAAGGACGTACGAAACGAGACCCTCACCACAGTGATCGA
CGAGCAGCTCGCGGGCAACGGCTCGGATATCGTCCGGGTGAAGTTCCAGC
TGGACAGGGTCAATGGCAACGAGATCGGGGACGACAAGGACGTACGAAAC
GAGACCCTCACCACAGTGATCGACGAGGTGCTGCAGCCTATGCGAGATAT
AACTATCGACGGTGCTGCAGCCTATGCGAGATATAACTATCGAC
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