mRNA_L-elsbetiae_contig808.17073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig808.17073.1
Unique NamemRNA_L-elsbetiae_contig808.17073.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: D8LDC7_ECTSI (Plastid lipid associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC7_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 7.460e-110
Identity = 251/420 (59.76%), Postives = 274/420 (65.24%), Query Frame = 1
Query:  235 GAGPLLMSSGGDGGKDSGEQKATEDGDKGP---AAPVDAELSEPAVSTSGGNXXXXXXXXAPEGXXXXXDASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKLDLPTLGVDLPSAEKLENILPKKGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKAKDKRKNLKNAVEEKISGGSASSAKGEAGGTXXXDDVSEPKDGSA-AQSVVDVETLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASSASLLRAPYFESTYCDGDLRVGRTGKGDMFVSIRA 1482
            G GPLLM+SG              DG+ GP   A PVDAELS+PA +  GG XXXXXXX A              GD ATR ALKQKLLRKVATLNRGF+A+E DRLDVEEI+EMLEMENP+PK CE F  GSSPLAGRWQLLYTTSLDVLSL+INP VTVGKIFQ+IE DGR+IQNIIELQPPFAAVNKILGSSM TLTVKLETEPVSDSRINLKFVRTEIKA+SLFGR+LDLPTLGVD+PSAE+LE ++PK G                              A K K K K   NAV+    G       GE   +   DDV+E  D +  A+   D E       XXXXXXXXXXXXXXXXX                    AS LR PYFESTY D DLRVGRTG GD+FVSIRA
Sbjct:   93 GVGPLLMTSG--------------DGESGPGPAAVPVDAELSDPAAA--GGGXXXXXXXDA-------------VGDAATRAALKQKLLRKVATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAVNKILGSSMTTLTVKLETEPVSDSRINLKFVRTEIKANSLFGRELDLPTLGVDIPSAERLEKLIPKGGGSSGGGKALKEKVEGAKTKARQL-------AEKLKGKXKKSDNAVD----GDEKKKDDGEGNSSGDGDDVAEAADATPEAEEQSDKEEASPAPGXXXXXXXXXXXXXXXXXL-------------------ASSLRTPYFESTYVDEDLRVGRTGNGDVFVSIRA 453          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A6H5K952_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K952_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 3.110e-98
Identity = 257/461 (55.75%), Postives = 276/461 (59.87%), Query Frame = 1
Query:  235 GAGPLLMSSGGDGGKDSGEQKATEDGDKGP---AAPVDAELSEPAVSTSGGNXXXXXXXXAPEGXXXXXDASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLT------------------------------------------VKLETEPVSDSRINLKFVRTEIKADSLFGRKLDLPTLGVDLPSAEKLENILPKKGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKAKDKRKNLKNAVEEKISGGSASSAKGEAGGTXXXDDVSEPKDGSAAQSVVDVETLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASSASLLRAPYFESTYCDGDLRVGRTGKGDMFVSIRA 1482
            G GPL M+SG              DG  GP   A PVDAELSEPA +  G          A EG     DA    GDPATR ALKQKLLRKVATLNRGF+A+E+DRLDVEEI+EMLEMENP+PK CE F  GSSPLAGRWQLLYTTSLDVLSL+INP VTVGKIFQ+IE DGR+IQNIIELQPPFAAVNKILGSSM TLT                                          VKLETEPVSDSRINLKFVRTEIKA+SLFGR+LDLPTLGV++PS E LE ++PK G                                K K K K  +NAV                      D     +D     S        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AS LR PYFESTY D DLRVGRTG GD+FVSIRA
Sbjct:   17 GVGPLFMTSG--------------DGQSGPGPAAVPVDAELSEPAAAGGG----------AREGGTE--DA---VGDPATRAALKQKLLRKVATLNRGFVAEESDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAVNKILGSSMTTLTARTTFSFCAIFCVVERCTPSGVRLACDHGRRPRQLDQYGHEKVKLETEPVSDSRINLKFVRTEIKANSLFGRELDLPTLGVNIPSVESLEKLIPKGGGSSGGGKALKEKAEDAKTKAREL-------VEKLKGKEKKFENAV----------------------DGEXXXEDDDEGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASSLRTPYFESTYVDEDLRVGRTGSGDVFVSIRA 419          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A7S2XYK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.690e-28
Identity = 65/162 (40.12%), Postives = 99/162 (61.11%), Query Frame = 1
Query:  487 LLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAV-NKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKL-----DLPTLGVDLPS 954
            L++  +  NRG      ++  + +++E LE  NP+P PC+   DG+SPL G WQLL+T +LDVLS+ I P V VG+++Q +  DG  I NII+LQP  A V N ++GSS+A L V+   +  S  RI + F+ +E++  +L GR +      LP L V+ P+
Sbjct:    3 LIKTCSGTNRGLTTTNEEKTKIFDLLERLEELNPNPNPCDGLLDGTSPLEGEWQLLFTNALDVLSVGIVPAVYVGQVYQNVNYDGSEITNIIDLQPGLAPVLNPLIGSSVARLKVRARGKVESSKRIAINFLSSELQPQTLLGRDITGLFSSLPPLKVEFPT 164          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A4D9CVH1_9STRA (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVH1_9STRA)

HSP 1 Score: 119 bits (299), Expect = 6.770e-26
Identity = 64/169 (37.87%), Postives = 102/169 (60.36%), Query Frame = 1
Query:  433 DASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIEL-----QPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKLD 924
            D    T    TR+ L+  LL  +   N+GF   E++R D+++ +  LE  NP+P+P EAF+ G+SPL+G W+L+YT +LDVL L + P   +GK+FQ I PDG++I N++E+     Q  F  +   LG S A L V+  +E +S +R++L F     +  +LFG +++
Sbjct:   89 DVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVE 257          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR)

HSP 1 Score: 101 bits (251), Expect = 7.880e-20
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 1
Query:  433 DASAETGDPATREA----LKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEI-NPTVTVGKIFQ---EIEPDGRA-----IQNIIELQPPFAAVNKILGS-SMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKL 921
            D  A   D  TR      LK  L   V++ NRG  A   DR ++  +V  LE   P   P    AD    L GRW+LL+T +LDVLSL +  P   VG+IFQ   E+  +G+      I+N+++L+P FA V+ +LG  S+ ++TV  E    SDSR+++ FV+  IK + +FG +L
Sbjct:   70 DVPASAVDAQTRAVPISDLKCSLYAAVSSTNRGLTASADDRANILSLVAELERAKPPTAP----ADDPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQLEPAFAPVSNVLGGQSITSITVSAEGRKTSDSRVDITFVQNAIKQEKIFGMQL 242          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A5J4YK43_PORPP (Plastid lipid-associated protein 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YK43_PORPP)

HSP 1 Score: 94.0 bits (232), Expect = 9.810e-17
Identity = 64/183 (34.97%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  433 DASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEI-NPTVTVGKIFQEIEPDGRAIQ------NIIELQPPFAAVNKILGSSMATLTVKLETE----PVSDSRINLKFVRTEIKADSLFGRKLDLPTLGVDL 948
            D  A+ G+ +  E LKQ+ +   A  NRGF A  A +  + +++E LE  + S  P +      +   G W L+YT SLDVLSL +  P   +G+IFQ +E      Q      NI+EL+PPF  V   LG       +++E E       D  +NL+F+R+ + A S+ G KL LP L   L
Sbjct:   77 DVDAKVGEYSL-EQLKQRFVLATADTNRGFAADAARQKVIMQMIEELEARSTSATPLD-----DALFLGEWSLIYTNSLDVLSLGLLAPVAGLGRIFQNVERAATGAQHEFDIFNIVELEPPFQVVLSPLGLGPTRSVLRVEAEGSRGDQDDQLLNLRFMRSNLTAASIAGMKLQLPKLSASL 253          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: UPI001FF0EE99 (PAP/fibrillin family protein n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF0EE99)

HSP 1 Score: 84.3 bits (207), Expect = 6.680e-15
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQP-PFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSL 906
            K KLL+ VA  NRG LA    + ++++++  LE  NP+P P +A       L+G WQLLYTTS+DV+ L   P VT+G+I+Q I+ D   + N+ E Q  PF             L VK   E V+ SRI + F ++ +    L
Sbjct:    4 KIKLLKAVAVTNRGLLASPRSQAELDQLIRQLEAHNPTPNPAQA----PELLSGCWQLLYTTSVDVIGLGRVPGVTLGQIYQVIQADKNRVYNLAEAQGIPFLE---------GLLAVKARFEVVNPSRIAIYFEQSMLALQRL 134          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: UPI001A00F769 (PAP/fibrillin family protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI001A00F769)

HSP 1 Score: 80.9 bits (198), Expect = 1.150e-13
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIE-LQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLF 909
            K +LL  +A  NRG LA E D + V   ++ LE  NP+PKP EA       L G W+LLYTTS  +L L+  P   +G+I+Q I      + NI E +  PF             ++V  + EPVS+SR+N+KF R+ I     F
Sbjct:    4 KAELLEAIAGTNRGLLATEIDNVRVLSAIQQLEDYNPTPKPFEA----KELLEGNWRLLYTTSKGILGLDRFPLFKLGQIYQCIRTAEATLYNIAEVIGLPFLE---------GIVSVVAKFEPVSESRVNVKFERSIIGLQRFF 135          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: UPI001C02A811 (PAP/fibrillin family protein n=1 Tax=Leptothoe spongobia TaxID=2651728 RepID=UPI001C02A811)

HSP 1 Score: 77.8 bits (190), Expect = 1.250e-12
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFG 912
            K +LL  +A+ NRG LA    + D+   V  LE  NP+PKP EA    +  + G WQLLYTTS ++L ++  P +T+G I+Q +  + + I N+ E++     +          ++V    E VSD R+N++F R      S  G
Sbjct:    4 KTELLDAIASTNRGLLATPDQKQDILTKVARLEQCNPTPKPLEA----TDLINGNWQLLYTTSTELLGIDRFPFLTLGNIYQCVRVEQQRIYNLAEIKSALGGL----------VSVTATFEGVSDKRVNVRFDRAIFGLQSTLG 134          
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A6P0NE78_9CYAN (Fibrillin n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NE78_9CYAN)

HSP 1 Score: 75.9 bits (185), Expect = 5.780e-12
Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 1
Query:  478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRK 918
            K  LL  +A  NRG LA +  + D+   V  LE +NP+P P E     +  L G WQLLYTTS ++L ++  P +++G I+Q +  D + I N+ E++   A         + ++T K E   VS+ R++++F R      +  G K
Sbjct:    4 KTDLLNAIAPTNRGLLANDVQKEDILAQVTRLETKNPTPNPLEC----ADLLNGNWQLLYTTSSELLGIDRVPLLSLGNIYQCVRLDQQRIYNLAEIRSAIAG--------LVSVTAKFEV--VSNRRVDVRFDRAIFGLQATLGYK 136          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDC7_ECTSI7.460e-11059.76Plastid lipid associated protein n=1 Tax=Ectocarpu... [more]
A0A6H5K952_9PHAE3.110e-9855.75PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A7S2XYK8_9STRA1.690e-2840.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CVH1_9STRA6.770e-2637.87PAP_fibrillin domain-containing protein n=3 Tax=Mo... [more]
R7Q658_CHOCR7.880e-2037.85PAP_fibrillin domain-containing protein n=1 Tax=Ch... [more]
A0A5J4YK43_PORPP9.810e-1734.97Plastid lipid-associated protein 1, chloroplastic ... [more]
UPI001FF0EE996.680e-1537.50PAP/fibrillin family protein n=1 Tax=Synechococcus... [more]
UPI001A00F7691.150e-1337.93PAP/fibrillin family protein n=1 Tax=Pleurocapsale... [more]
UPI001C02A8111.250e-1233.79PAP/fibrillin family protein n=1 Tax=Leptothoe spo... [more]
A0A6P0NE78_9CYAN5.780e-1232.65Fibrillin n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig808contigL-elsbetiae_contig808:7654..15199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue1.5e-26
Seed eggNOG ortholog2880.D7FJD3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to acid chemical
EggNOG OGs28JPH@1,2QS2T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionplastid lipid associated protein
Ec32 orthologEc-25_001740.1
Exons5
Model size2489
Cds size1233
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.0427523-UTR-L-elsbetiae_contig808:7653..79051622816893.0427523-UTR-L-elsbetiae_contig808:7653..7905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig808 7654..7905 +
1691683892.4530246-UTR-L-elsbetiae_contig808:7653..79051691683892.4530246-UTR-L-elsbetiae_contig808:7653..7905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig808 7654..7905 +
1622816893.11386-UTR-L-elsbetiae_contig808:14195..151991622816893.11386-UTR-L-elsbetiae_contig808:14195..15199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig808 14196..15199 +
1691683892.5216935-UTR-L-elsbetiae_contig808:14195..151991691683892.5216935-UTR-L-elsbetiae_contig808:14195..15199Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig808 14196..15199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.0561173-CDS-L-elsbetiae_contig808:7905..81521622816893.0561173-CDS-L-elsbetiae_contig808:7905..8152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 7906..8152 +
1691683892.465627-CDS-L-elsbetiae_contig808:7905..81521691683892.465627-CDS-L-elsbetiae_contig808:7905..8152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 7906..8152 +
1622816893.0696545-CDS-L-elsbetiae_contig808:9080..92281622816893.0696545-CDS-L-elsbetiae_contig808:9080..9228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 9081..9228 +
1691683892.4745042-CDS-L-elsbetiae_contig808:9080..92281691683892.4745042-CDS-L-elsbetiae_contig808:9080..9228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 9081..9228 +
1622816893.0819888-CDS-L-elsbetiae_contig808:10734..109121622816893.0819888-CDS-L-elsbetiae_contig808:10734..10912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 10735..10912 +
1691683892.4853997-CDS-L-elsbetiae_contig808:10734..109121691683892.4853997-CDS-L-elsbetiae_contig808:10734..10912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 10735..10912 +
1622816893.0922263-CDS-L-elsbetiae_contig808:12402..124711622816893.0922263-CDS-L-elsbetiae_contig808:12402..12471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 12403..12471 +
1691683892.5013843-CDS-L-elsbetiae_contig808:12402..124711691683892.5013843-CDS-L-elsbetiae_contig808:12402..12471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 12403..12471 +
1622816893.1022453-CDS-L-elsbetiae_contig808:13604..141951622816893.1022453-CDS-L-elsbetiae_contig808:13604..14195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 13605..14195 +
1691683892.5108604-CDS-L-elsbetiae_contig808:13604..141951691683892.5108604-CDS-L-elsbetiae_contig808:13604..14195Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 13605..14195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig808.17073.1prot_L-elsbetiae_contig808.17073.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig808 7906..14195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig808.17073.1

>prot_L-elsbetiae_contig808.17073.1 ID=prot_L-elsbetiae_contig808.17073.1|Name=mRNA_L-elsbetiae_contig808.17073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=411bp
MSSGGDGGKDSGEQKATEDGDKGPAAPVDAELSEPAVSTSGGNDGGGGGG
GAPEGEGGGGDASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDV
EEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTV
TVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVS
DSRINLKFVRTEIKADSLFGRKLDLPTLGVDLPSAEKLENILPKKGSGGG
GGGVGVGVGGGLKSKLEDTKSKAQALARKAKDKRKNLKNAVEEKISGGSA
SSAKGEAGGTGGGDDVSEPKDGSAAQSVVDVETLEEEEEEEKGEESMGEK
GGGGEEEESSGGGEDGEKESAAPASSASLLRAPYFESTYCDGDLRVGRTG
KGDMFVSIRA*
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mRNA from alignment at L-elsbetiae_contig808:7654..15199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig808.17073.1 ID=mRNA_L-elsbetiae_contig808.17073.1|Name=mRNA_L-elsbetiae_contig808.17073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7546bp|location=Sequence derived from alignment at L-elsbetiae_contig808:7654..15199+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTTCGTGACCCCACCGGCGGCGGCTCTGGCGGGGAATCACCGCCGCCC AGCCCCCGCGTCTTCCCGGGGCGCGGCGGTGGCGGCGACGACAACGGCAA CGGCGACAGTGACAGCGGCGACGACTCGACCCGGAGGAGCCCGCGGGCGC AGGAGGCGGAGCAGGGCGGCCAACGGGCTGCTACCCGGCAGCGGCAGCGG CGGCGGCCGCGGCCTAGGCGGCAGCAGCCAGCTGGGGGCCGGCCCCCTGC TCATGAGCAGCGGTGGCGACGGCGGAAAAGACTCCGGAGAGCAAAAGGCT ACCGAGGACGGAGACAAGGGGCCGGCCGCCCCGGTGGATGCTGAGCTCTC TGAGCCCGCGGTATCTACTTCTGGCGGGAACGACGGCGGCGGCGGGGGTG GGGGGGCGCCCGAAGGAGAGGGAGGAGGGGGCGACGCGAGTGCGGAGACG GGGGACCCCGCGACACGAGAGGCGCTCAAGCAGAAGCTTCTGCGGAAAGG TACGTGGGTGCAGCGCGGGAGTTCCAAGCACGTCGCCTAGGGGGCGCGGT GGCGATCTCGTGATTGTAGAGGGGGGGGGGGGGGGGGGGGTCGTTTTGAC TCGGCAAAGCACCAAGTTTGAAAGCACAGAGAGCGGAAGCGCCCTGACCT CTTTAACTCTCCCGTATCTGGTACGTTGCCCGTCGTGCTACGATAAGTTG TTGTCCCAAATCTTTTCATCAAAGAAGTTATTTTTTGTGCAGAGTAAAAT CATACTTGTTGCTGGCTTGCTTGCGCCGTCGCCGCCACCACTGACAGGGT CTCAGACGGCCGCACGACTAATGTAAAGGTGTTCCGGGGATCGTAGCGTG TTTTCAGGAGTCAAAAGTGTCCGTTTATAACGGGTTAACCTAGCACTACA GTACCGGTATTATACGAGTTGATTCGGCAGACAGGGGTCGAAACCTACGG CTCTCACAAATAGTTTTTTCTTTGTTTTTCGTGCAAACGACATGGCTTGT GGGGTATTCTTCGGAAATAAGTCAAGAAAGAGCGAAAAACAAACGGCCAA CACCCCGTGGAGAATGTACCGCAGTTCCGTATGCATCATGACGCAGTCCG TATTGGTCCTGCGGAGTAAAAGAACACCCACCTGTAAATATACTTCCCAA TAAATATACCTTACACGGACACTAGTTTGGACGTATTATTGTACACACGC GTAAATATATAATATATGCACAGGGCATTTATACATGGCGAAAAAAAAAA TGTATTTTTTAGTCTTGTCATCCTAGCCCTCAACACACGCACGGGTGTTT GAACTGTGCCCCCCCCCCCCCCCCTTCCATCTTCTGGCTTCCTTCTTTTT TCCCCCCCCGTGGGCTTCGTTTCCCACGGGAAAAATCTCGCAATGGAACC ACGTATATATCATACGTACTTTTGCAGTCGCTACCCTGAACAGAGGGTTC CTGGCGCAGGAGGCCGACAGGCTGGATGTGGAGGAGATCGTTGAGATGCT GGAGATGGAGAACCCGAGCCCCAAGCCCTGCGAGGCGTTCGCGGATGGGT CTTCTCCTCTCGCTGGGCGATGGCAGTGAGTTTTTTTTTTTTTTCATTTT TTTTTTCATTTTTTTCTCTTCACGAGAGGGCATCATCCAATCGTTTTGCC AGAGCTCTAACCCCGTGGTCGCACAGAGGAGAGTTTGCGCAACGCATTTG TACATGCATGCATAGGCACATGTGTATGGTACATGTCCTTATGTATGGTG AACATATGTATGGTGATCGTTTTTTTTTGTTGTCGTGAAGTTTTCTTTTG TATGTAGATGTAAGCCGTTTGTCTATCTGCGCGCACCTGACCTGTATAGT GGTCTTTCTTTGTTGTCGTGAAGTTATCTTCTGTATGTAGATGTCAGCCG TTCGTCTATCTGCGCGCACCTGACCCTGTGTGGTGATCTTTTTTGTTGTC GTGAAGTTTTTTTCTATATCTAGATGCCAGCCGTTCATCTATCTGCGCGC ATCTGACCTGTATGGTGATCTGTTGTTGTCGTGTAGTTTTCTTTTATACG TATGTAGATGCCAGCCCGTTCGTCTCTCTGCGCGCGGCCCTGTGGAAAAC GTCGTTCCAGGGGTACATACGACTGCTGCCAGACGTGGGCCGTAGCCCCC ATATTTGGGCCCTAACTGTGTCCCGACCGTGGTCTCCCGACGTTTCGGCG GTAACAAGCCTCATCACCAGTCCTAATTTACGCCAACCACAGCAGTTCTT GAAGTTTGAAAAGATTCGAGCACAATTCAGCGATGGATGCCATTATGTAG CTACCTCATCGGAGCTTGAAGCAATTGTTGCTCTCTCTATTTCTCTCTCT TGCCGGTACTTCTCTGGCTTGCATTTCCGGTTATATTTACCTTTGCTGTT TGTTGGTTGGTTACCGACTCGAAAAACCGTCTTGTGTGTGTTTATGTTTA ACACATGTGTGTATGTATAACACATGTGTGTGGAAAGTCTCGTCTTTGGT GGTTTGTGTGCCCTCTCCCCTCCTCTGAAGTAGTAGTAGGTACAAAACGT GACGAAAAGGGGGTCTGGTTTATCCGTCTTGGTCAAGAGCGCGAGTACAT CTGTCGATCCCCTCGTCCCTGCCGAGGTCACCAAGCCCCTCTTCAAAATC GGAGCACAGCCTTCGCGAAGAAATTAAGTTTTTTTACCTGGACAATAAGA GGCACGGGAGGGAGGGGGTGGGGGGTGGGGGGGCCTCGTAAAAAAAACAA CCCTAACCCTAACTAACCCCAACCCACAACCCCGACCCTCTTTCCCTATT CGTATACTGCTATTCATCCCATATGTAAGCTTAAGACAAACTCTGCGAAG GCTTTCATTTAATACATACATAGGTATACTGTTGTCTTATTTTCCAGCTA TTTATTGTCTTCCAGCCATCTTGGTCGCAAGCGGCACCGCCTCGTACATG CCACGGACACGATGCTCACAAGTAGGAAAGAGCGGGTGCATTCGTGTGGA CGACTGACCCACAGGGCGGCAATTACCCGGATGGACTTCCGTCTCACCCA CGCCCCCCCCTCTAACCTCCCTACCCCGCAGGCTGCTTTACACCACGTCG CTGGACGTGCTCTCCCTCGAGATCAACCCCACGGTGACCGTGGGGAAGAT ATTCCAGGAGATCGAGCCGGACGGGAGAGCGATCCAGAACATCATCGAGC TGCAGCCGCCCTTCGCGGCGGTAAACAAGATCCTGGGGAGTTCCATGGCC ACGCTCACGGTGAGAGAAAGAGAGAGCTTGCCGGTGCCGGTGCCGATGCC GGATGTGTGTGTGGTGAGCGGCGTGTGCTCTCAGAGGCTTCTCTGTCTCG AGCCTGCGGCTGCTGCTGTCGTTGTTGTGGGTGGTGGTGGTGGTGGTGGC AGTGATGGGTCTCGTTGGTGGTGTTGTTCGGGACTGTCGTGGCCGCGGGG GGAGGGTGGGGGGGGGGGCGAGGGTTACTGCCCTCTTCTCAAAAACGGAA CGGAATGCCTACCTCTGATGCTGTAACCAGCGATGATGGTGGCTGGTGGT GGTGGTGATGGTGATGGTACGGTTCTCATGGGGGGGTGGTGTTGTTGTCG GAACCGTTGTGCTTTTGCTGGTTCACGGCAAGCATCTTTGGAAGGGCTTT TTTTTCCCTCACCTTTCCATGTCTTCCTTGATAACTTGGACCTCCTTCGC GAAAAAATCCTTTCTATGAATGAAATACTTCGAATAATAGAGAGGGGTTC CGTAACCGTAACCCTAACCCCAAACCGACCTCCCCGTTACATAGCCGTTT CCGATATGATTTTTTTTTTTCTAGTAAAACCTGCGAAGTCAGTCTACTGA CTGTAATATTTTCAGCGGACATTTTCCCACTACGAGTAGGTATATACCGT ATACGCCACAAGATAACACACCCCTTGGGCCGATTTTCAAAGCTCGGTTA CTCCGCAACGACTGTAATTCTAATATGTACGATACCAAACGACACGTTTT CGGGCAGCTCTTGATGAGATCTTTCGAACGCCGCCCTTTTCGGGGCTGAC ACACTCTTCTCTCGCTGTCGAGTACATCCTTGATCTTTGAAAATCGGTCC AGGAGGTGGGTGTGTTATCTTCTGTCGTATACGGTATACATACTTGTACC GCCTCCCACGTTGCAGGTGTCGTCGCTTTTGTTTCTTGACCCGCGTGTTT CGTGCTCCGTGCTCTCGGTGGACGCATATTTAGTGTCGTCACTTTTTTCG TTACACGACAAAGTGAGACGCGGCACACGTGCCGATATACCGTAATCATG CGGATTATCGCACCCCCGTGTTGAGAGCGTTTTTCTACAGCGTATGTATT TCTCCACAACCAGGAGGGTGCGAACACTAACTGATACCTCTCTGGAAAGC CCCCGACGAGACGTTTCGAAAACCACCCCTTTTCGGCAGTGGTACCCTCC TGGTTGTGGAGAAATTGTAATTGTTGAGAAATACGCTATAGAAAAACGCC TAACACGGGGGTGCGATAACCCGCATGATTGCGGTACTCATGACAGCCAC AGCAGCCAAATGGTATATAGACAATGCTATCTAATAATGCATGTTTTTTC GATGCGTCGAGAAGCATGCGTCGGGCGGGGCCTGTGAAAAACGCGAAGAG AGCGAAAAAAATATCACGCTTACGGTGTCAAGTCATCATTGAACCTGCAT GTTGTCGTTTTTTTTTGTTTTTTTTTTCACGGTGGGCGGATGAATGCAGG TGAAGCTGGAGACAGAGCCGGTCTCCGACTCGCGCATCAACCTTAAGTTC GTCAGGACCGAGATCAAGGTGCGGAGCGGCAGTCAAGAACCGCCGTTGCG CGGTTTTGGGTACTCTCTCTTGCAACACACACACATCTAAATAGATATAT AGACCATGTACACGATCCTTTTTCATTCGTCCTCAGGATTTTTATCTCTC ACTTCAACATCATAGAGTATTGAAACCTGCCCTCGGCAGAAAAAGTACGC GTCATTCTTCCAACTACGTTAGCTACACATCGGTGTAGTACGTACGGGCT AAGTGAGGAAATTTTCTCGTGAAACTTGTCCATGCGGTATCCTACTCGGT TTGAAGATTCCTATGCGAGTCTCTAATGACCCAGGGCGATCGAGCGGGTT CTGGCACCAGCGTCTGCCTCATCGTGACAAGCGGATGCACTTTTAAACCT CAAGAATAGGCCCGAATCATGTGTACAGTGTAATGCCGCAAACGACAACG CTCTGTCGTTTGCAAAAAAAAAAAGTGGAAGCTCAGAATTCACCTTGGGT CATTTCTCGAGCGGACTACAAAGCAGATCTTCGATTGGGCGTTTATGTAT TTAATAAACGCGTTTATTTCTCGCACCGGGATTTGAAAATACGAGACGAT TTGGGTTCTGTCGGCTCGGGGAGCAGTGACACCGCTTCAAACAAGCCACT ACACTACTGCTGTGCGGAGCCTTTTTTCGTGTCGGGGACCGCAACACCCC GCCCCCCCCTTCTGTGTGGTTGCAAACGAAAATGCATGCAGGCACGCGTT TAACCACGAGAGAGACACGAGCGCTGGATTTTAGTTTCGGGCAAAAACTT GGGGGAAATTGTTGAAACTGATTTTGTAGAAGCAAACACAAAAAAGAGAG ACGCCATCGTATTTTTATTTTCTTTCGCGATTCTCGATTCTCGAACGTGA CCGCTCAGAGCCATCGATCGACGTTGCAGGGTTCGAACAAGACCCGCCCT CCTTGTTGGCTGCTGATGCCCTCTACTCTCTGCGTGTGCCCCCTCTCCTC TCCCCCGTCGCCCGACTCGCTTGGCGTGCATTCGTTTTTGTTTTTTTTGT TTTTTGTTTTCGTCTTCTCTCCGGCGGCGAAAAAAAAACCCGGATTCTTT TCGTCTCCGGCGGCGACAAAACTCCACACCAAAACGACGAAAAAAAAAAA GGCGGACTCTCTGTTCGGGAGAAAGCTAGACCTCCCGACCCTCGGCGTCG ACCTCCCCTCGGCAGAAAAGCTCGAGAACATCCTTCCGAAGAAGGGCAGC GGCGGCGGCGGCGGCGGCGTCGGCGTCGGCGTCGGAGGCGGCCTGAAAAG CAAGCTCGAGGACACCAAGAGCAAGGCCCAGGCCCTCGCCCGGAAGGCGA AGGACAAGAGGAAGAACCTGAAGAACGCCGTTGAAGAGAAAATTAGCGGA GGCTCCGCGAGCTCCGCGAAGGGCGAGGCGGGGGGCACCGGAGGGGGTGA TGACGTCAGCGAACCGAAGGATGGGTCGGCGGCTCAGAGCGTGGTCGACG TGGAGACGTTGGAGGAGGAAGAGGAAGAGGAGAAGGGAGAGGAGAGCATG GGGGAGAAGGGAGGAGGAGGAGAAGAGGAGGAGAGCAGCGGCGGCGGGGA GGACGGCGAAAAGGAGTCCGCCGCGCCTGCTTCATCCGCCTCGCTGCTCA GGGCTCCGTACTTCGAGAGCACCTACTGCGACGGGGATTTGAGGGTGGGC CGGACCGGGAAGGGGGACATGTTCGTATCCATCCGAGCATGAGCCGTTTC GGTACAATAATGGCGATAGGAAGAGACACGCAAAAAATAGACAAACGCGG CGACTGCTGCGTGCCCGAGGGCATGCCCTCGTTTCACTCGCGTCGGGGTT GGGAACTATGTAGCTGCCTTTGCTGTTGAACCGGACTGCGAGGCCGGCGA GGACGACAGCAGCGAGTTTTTTTTTTTGTCTGAATGAGTTTTGGGTGCGA AGGTGGTGGAGCGATATGTGGTCGGATGCGTGGTGTGAGTGGGATCCTCC GAATCTCCGGAGATTGTGCAAGAAAAGCGTCGCGCTTCATATGTAGGTCT AGCGCTCTTGGGGTTGCGATATCGATAGATGTGTACGGTGGTTTTGGGGT CGAAAAATTGAGTGGCCGGTCAGCTGATGGGAAGGTGATGTCTGTGTCGC ATTGCACTCGATGTCTGGGTGTAGTGAAAAGTTCGTTGCTTCGTGTGTTG GTTTTCAGGGGCCGAAAGAGATGTGTTAATGTTGGACAGCAAAAAAATGG ACTTCATGACCGGCATTCTATGTAAAAAATGGGTCATTCGGGGCGGTTGG GAGTGGCGTGGTAGAGCGGGAAGATGGCCGTGATAAATGCATCGTTTTCT TTTGTGATCGTCGTCCTGTGCAGGCTGCCTTCGGTCGCAGAGGTGTTACC TTCTGATTTGTTTGGTGGTCTCTGCCGCGAGAGTGCAGACAAAACACCAG CGGGTTTCTCCATATGCCGTCGCTTGCTGCCGCTCGCCGAGTTGGAAGAA TTTGCGAGCAATGTTACTTCACCATCGATTGTTTTCGTCGCCTTCTTTCC CCACAGAAGTCACTCTACATATACTGTAGATGACGGATTTATTTTTTATG AAAATGATCCCTCTCACGGTCAGTCTTTGTCTGTATGTATGTACTAGGGT TATAGAACACCCCCCCCACGCCCCAGTGGGCGGTGGGGCCAGAAGGCTCT CGACGTAACGGCAGGATGGGGGGGGGGGGGGAGAGAAATTGCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig808:7654..15199+

>mRNA_L-elsbetiae_contig808.17073.1 ID=mRNA_L-elsbetiae_contig808.17073.1|Name=mRNA_L-elsbetiae_contig808.17073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig808:7654..15199+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAGCGGTGGCGACGGCGGAAAAGACTCCGGAGAGCAAAAGGCTAC
CGAGGACGGAGACAAGGGGCCGGCCGCCCCGGTGGATGCTGAGCTCTCTG
AGCCCGCGGTATCTACTTCTGGCGGGAACGACGGCGGCGGCGGGGGTGGG
GGGGCGCCCGAAGGAGAGGGAGGAGGGGGCGACGCGAGTGCGGAGACGGG
GGACCCCGCGACACGAGAGGCGCTCAAGCAGAAGCTTCTGCGGAAAGATG
AGCAGCGGTGGCGACGGCGGAAAAGACTCCGGAGAGCAAAAGGCTACCGA
GGACGGAGACAAGGGGCCGGCCGCCCCGGTGGATGCTGAGCTCTCTGAGC
CCGCGGTATCTACTTCTGGCGGGAACGACGGCGGCGGCGGGGGTGGGGGG
GCGCCCGAAGGAGAGGGAGGAGGGGGCGACGCGAGTGCGGAGACGGGGGA
CCCCGCGACACGAGAGGCGCTCAAGCAGAAGCTTCTGCGGAAAGTCGCTA
CCCTGAACAGAGGGTTCCTGGCGCAGGAGGCCGACAGGCTGGATGTGGAG
GAGATCGTTGAGATGCTGGAGATGGAGAACCCGAGCCCCAAGCCCTGCGA
GGCGTTCGCGGATGGGTCTTCTCCTCTCGCTGGGCGATGGCATCGCTACC
CTGAACAGAGGGTTCCTGGCGCAGGAGGCCGACAGGCTGGATGTGGAGGA
GATCGTTGAGATGCTGGAGATGGAGAACCCGAGCCCCAAGCCCTGCGAGG
CGTTCGCGGATGGGTCTTCTCCTCTCGCTGGGCGATGGCAGCTGCTTTAC
ACCACGTCGCTGGACGTGCTCTCCCTCGAGATCAACCCCACGGTGACCGT
GGGGAAGATATTCCAGGAGATCGAGCCGGACGGGAGAGCGATCCAGAACA
TCATCGAGCTGCAGCCGCCCTTCGCGGCGGTAAACAAGATCCTGGGGAGT
TCCATGGCCACGCTCACGGCTGCTTTACACCACGTCGCTGGACGTGCTCT
CCCTCGAGATCAACCCCACGGTGACCGTGGGGAAGATATTCCAGGAGATC
GAGCCGGACGGGAGAGCGATCCAGAACATCATCGAGCTGCAGCCGCCCTT
CGCGGCGGTAAACAAGATCCTGGGGAGTTCCATGGCCACGCTCACGGTGA
AGCTGGAGACAGAGCCGGTCTCCGACTCGCGCATCAACCTTAAGTTCGTC
AGGACCGAGATCAAGGTGAAGCTGGAGACAGAGCCGGTCTCCGACTCGCG
CATCAACCTTAAGTTCGTCAGGACCGAGATCAAGGCGGACTCTCTGTTCG
GGAGAAAGCTAGACCTCCCGACCCTCGGCGTCGACCTCCCCTCGGCAGAA
AAGCTCGAGAACATCCTTCCGAAGAAGGGCAGCGGCGGCGGCGGCGGCGG
CGTCGGCGTCGGCGTCGGAGGCGGCCTGAAAAGCAAGCTCGAGGACACCA
AGAGCAAGGCCCAGGCCCTCGCCCGGAAGGCGAAGGACAAGAGGAAGAAC
CTGAAGAACGCCGTTGAAGAGAAAATTAGCGGAGGCTCCGCGAGCTCCGC
GAAGGGCGAGGCGGGGGGCACCGGAGGGGGTGATGACGTCAGCGAACCGA
AGGATGGGTCGGCGGCTCAGAGCGTGGTCGACGTGGAGACGTTGGAGGAG
GAAGAGGAAGAGGAGAAGGGAGAGGAGAGCATGGGGGAGAAGGGAGGAGG
AGGAGAAGAGGAGGAGAGCAGCGGCGGCGGGGAGGACGGCGAAAAGGAGT
CCGCCGCGCCTGCTTCATCCGCCTCGCTGCTCAGGGCTCCGTACTTCGAG
AGCACCTACTGCGACGGGGATTTGAGGGTGGGCCGGACCGGGAAGGGGGA
CATGTTCGTATCCATCCGAGCATGAGCGGACTCTCTGTTCGGGAGAAAGC
TAGACCTCCCGACCCTCGGCGTCGACCTCCCCTCGGCAGAAAAGCTCGAG
AACATCCTTCCGAAGAAGGGCAGCGGCGGCGGCGGCGGCGGCGTCGGCGT
CGGCGTCGGAGGCGGCCTGAAAAGCAAGCTCGAGGACACCAAGAGCAAGG
CCCAGGCCCTCGCCCGGAAGGCGAAGGACAAGAGGAAGAACCTGAAGAAC
GCCGTTGAAGAGAAAATTAGCGGAGGCTCCGCGAGCTCCGCGAAGGGCGA
GGCGGGGGGCACCGGAGGGGGTGATGACGTCAGCGAACCGAAGGATGGGT
CGGCGGCTCAGAGCGTGGTCGACGTGGAGACGTTGGAGGAGGAAGAGGAA
GAGGAGAAGGGAGAGGAGAGCATGGGGGAGAAGGGAGGAGGAGGAGAAGA
GGAGGAGAGCAGCGGCGGCGGGGAGGACGGCGAAAAGGAGTCCGCCGCGC
CTGCTTCATCCGCCTCGCTGCTCAGGGCTCCGTACTTCGAGAGCACCTAC
TGCGACGGGGATTTGAGGGTGGGCCGGACCGGGAAGGGGGACATGTTCGT
ATCCATCCGAGCATGA
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