mRNA_L-elsbetiae_contig808.17073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: D8LDC7_ECTSI (Plastid lipid associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC7_ECTSI) HSP 1 Score: 353 bits (905), Expect = 7.460e-110 Identity = 251/420 (59.76%), Postives = 274/420 (65.24%), Query Frame = 1 Query: 235 GAGPLLMSSGGDGGKDSGEQKATEDGDKGP---AAPVDAELSEPAVSTSGGNXXXXXXXXAPEGXXXXXDASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKLDLPTLGVDLPSAEKLENILPKKGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKAKDKRKNLKNAVEEKISGGSASSAKGEAGGTXXXDDVSEPKDGSA-AQSVVDVETLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASSASLLRAPYFESTYCDGDLRVGRTGKGDMFVSIRA 1482 G GPLLM+SG DG+ GP A PVDAELS+PA + GG XXXXXXX A GD ATR ALKQKLLRKVATLNRGF+A+E DRLDVEEI+EMLEMENP+PK CE F GSSPLAGRWQLLYTTSLDVLSL+INP VTVGKIFQ+IE DGR+IQNIIELQPPFAAVNKILGSSM TLTVKLETEPVSDSRINLKFVRTEIKA+SLFGR+LDLPTLGVD+PSAE+LE ++PK G A K K K K NAV+ G GE + DDV+E D + A+ D E XXXXXXXXXXXXXXXXX AS LR PYFESTY D DLRVGRTG GD+FVSIRA Sbjct: 93 GVGPLLMTSG--------------DGESGPGPAAVPVDAELSDPAAA--GGGXXXXXXXDA-------------VGDAATRAALKQKLLRKVATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAVNKILGSSMTTLTVKLETEPVSDSRINLKFVRTEIKANSLFGRELDLPTLGVDIPSAERLEKLIPKGGGSSGGGKALKEKVEGAKTKARQL-------AEKLKGKXKKSDNAVD----GDEKKKDDGEGNSSGDGDDVAEAADATPEAEEQSDKEEASPAPGXXXXXXXXXXXXXXXXXL-------------------ASSLRTPYFESTYVDEDLRVGRTGNGDVFVSIRA 453
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A6H5K952_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K952_9PHAE) HSP 1 Score: 321 bits (823), Expect = 3.110e-98 Identity = 257/461 (55.75%), Postives = 276/461 (59.87%), Query Frame = 1 Query: 235 GAGPLLMSSGGDGGKDSGEQKATEDGDKGP---AAPVDAELSEPAVSTSGGNXXXXXXXXAPEGXXXXXDASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLT------------------------------------------VKLETEPVSDSRINLKFVRTEIKADSLFGRKLDLPTLGVDLPSAEKLENILPKKGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKAKDKRKNLKNAVEEKISGGSASSAKGEAGGTXXXDDVSEPKDGSAAQSVVDVETLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASSASLLRAPYFESTYCDGDLRVGRTGKGDMFVSIRA 1482 G GPL M+SG DG GP A PVDAELSEPA + G A EG DA GDPATR ALKQKLLRKVATLNRGF+A+E+DRLDVEEI+EMLEMENP+PK CE F GSSPLAGRWQLLYTTSLDVLSL+INP VTVGKIFQ+IE DGR+IQNIIELQPPFAAVNKILGSSM TLT VKLETEPVSDSRINLKFVRTEIKA+SLFGR+LDLPTLGV++PS E LE ++PK G K K K K +NAV D +D S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AS LR PYFESTY D DLRVGRTG GD+FVSIRA Sbjct: 17 GVGPLFMTSG--------------DGQSGPGPAAVPVDAELSEPAAAGGG----------AREGGTE--DA---VGDPATRAALKQKLLRKVATLNRGFVAEESDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAVNKILGSSMTTLTARTTFSFCAIFCVVERCTPSGVRLACDHGRRPRQLDQYGHEKVKLETEPVSDSRINLKFVRTEIKANSLFGRELDLPTLGVNIPSVESLEKLIPKGGGSSGGGKALKEKAEDAKTKAREL-------VEKLKGKEKKFENAV----------------------DGEXXXEDDDEGNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASSLRTPYFESTYVDEDLRVGRTGSGDVFVSIRA 419
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A7S2XYK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK8_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.690e-28 Identity = 65/162 (40.12%), Postives = 99/162 (61.11%), Query Frame = 1 Query: 487 LLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAV-NKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKL-----DLPTLGVDLPS 954 L++ + NRG ++ + +++E LE NP+P PC+ DG+SPL G WQLL+T +LDVLS+ I P V VG+++Q + DG I NII+LQP A V N ++GSS+A L V+ + S RI + F+ +E++ +L GR + LP L V+ P+ Sbjct: 3 LIKTCSGTNRGLTTTNEEKTKIFDLLERLEELNPNPNPCDGLLDGTSPLEGEWQLLFTNALDVLSVGIVPAVYVGQVYQNVNYDGSEITNIIDLQPGLAPVLNPLIGSSVARLKVRARGKVESSKRIAINFLSSELQPQTLLGRDITGLFSSLPPLKVEFPT 164
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A4D9CVH1_9STRA (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVH1_9STRA) HSP 1 Score: 119 bits (299), Expect = 6.770e-26 Identity = 64/169 (37.87%), Postives = 102/169 (60.36%), Query Frame = 1 Query: 433 DASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIEL-----QPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKLD 924 D T TR+ L+ LL + N+GF E++R D+++ + LE NP+P+P EAF+ G+SPL+G W+L+YT +LDVL L + P +GK+FQ I PDG++I N++E+ Q F + LG S A L V+ +E +S +R++L F + +LFG +++ Sbjct: 89 DVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVE 257
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR) HSP 1 Score: 101 bits (251), Expect = 7.880e-20 Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 433 DASAETGDPATREA----LKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEI-NPTVTVGKIFQ---EIEPDGRA-----IQNIIELQPPFAAVNKILGS-SMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRKL 921 D A D TR LK L V++ NRG A DR ++ +V LE P P AD L GRW+LL+T +LDVLSL + P VG+IFQ E+ +G+ I+N+++L+P FA V+ +LG S+ ++TV E SDSR+++ FV+ IK + +FG +L Sbjct: 70 DVPASAVDAQTRAVPISDLKCSLYAAVSSTNRGLTASADDRANILSLVAELERAKPPTAP----ADDPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQLEPAFAPVSNVLGGQSITSITVSAEGRKTSDSRVDITFVQNAIKQEKIFGMQL 242
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A5J4YK43_PORPP (Plastid lipid-associated protein 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YK43_PORPP) HSP 1 Score: 94.0 bits (232), Expect = 9.810e-17 Identity = 64/183 (34.97%), Postives = 93/183 (50.82%), Query Frame = 1 Query: 433 DASAETGDPATREALKQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEI-NPTVTVGKIFQEIEPDGRAIQ------NIIELQPPFAAVNKILGSSMATLTVKLETE----PVSDSRINLKFVRTEIKADSLFGRKLDLPTLGVDL 948 D A+ G+ + E LKQ+ + A NRGF A A + + +++E LE + S P + + G W L+YT SLDVLSL + P +G+IFQ +E Q NI+EL+PPF V LG +++E E D +NL+F+R+ + A S+ G KL LP L L Sbjct: 77 DVDAKVGEYSL-EQLKQRFVLATADTNRGFAADAARQKVIMQMIEELEARSTSATPLD-----DALFLGEWSLIYTNSLDVLSLGLLAPVAGLGRIFQNVERAATGAQHEFDIFNIVELEPPFQVVLSPLGLGPTRSVLRVEAEGSRGDQDDQLLNLRFMRSNLTAASIAGMKLQLPKLSASL 253
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: UPI001FF0EE99 (PAP/fibrillin family protein n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF0EE99) HSP 1 Score: 84.3 bits (207), Expect = 6.680e-15 Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQP-PFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSL 906 K KLL+ VA NRG LA + ++++++ LE NP+P P +A L+G WQLLYTTS+DV+ L P VT+G+I+Q I+ D + N+ E Q PF L VK E V+ SRI + F ++ + L Sbjct: 4 KIKLLKAVAVTNRGLLASPRSQAELDQLIRQLEAHNPTPNPAQA----PELLSGCWQLLYTTSVDVIGLGRVPGVTLGQIYQVIQADKNRVYNLAEAQGIPFLE---------GLLAVKARFEVVNPSRIAIYFEQSMLALQRL 134
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: UPI001A00F769 (PAP/fibrillin family protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI001A00F769) HSP 1 Score: 80.9 bits (198), Expect = 1.150e-13 Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 1 Query: 478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIE-LQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLF 909 K +LL +A NRG LA E D + V ++ LE NP+PKP EA L G W+LLYTTS +L L+ P +G+I+Q I + NI E + PF ++V + EPVS+SR+N+KF R+ I F Sbjct: 4 KAELLEAIAGTNRGLLATEIDNVRVLSAIQQLEDYNPTPKPFEA----KELLEGNWRLLYTTSKGILGLDRFPLFKLGQIYQCIRTAEATLYNIAEVIGLPFLE---------GIVSVVAKFEPVSESRVNVKFERSIIGLQRFF 135
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: UPI001C02A811 (PAP/fibrillin family protein n=1 Tax=Leptothoe spongobia TaxID=2651728 RepID=UPI001C02A811) HSP 1 Score: 77.8 bits (190), Expect = 1.250e-12 Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1 Query: 478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFG 912 K +LL +A+ NRG LA + D+ V LE NP+PKP EA + + G WQLLYTTS ++L ++ P +T+G I+Q + + + I N+ E++ + ++V E VSD R+N++F R S G Sbjct: 4 KTELLDAIASTNRGLLATPDQKQDILTKVARLEQCNPTPKPLEA----TDLINGNWQLLYTTSTELLGIDRFPFLTLGNIYQCVRVEQQRIYNLAEIKSALGGL----------VSVTATFEGVSDKRVNVRFDRAIFGLQSTLG 134
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Match: A0A6P0NE78_9CYAN (Fibrillin n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NE78_9CYAN) HSP 1 Score: 75.9 bits (185), Expect = 5.780e-12 Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 1 Query: 478 KQKLLRKVATLNRGFLAQEADRLDVEEIVEMLEMENPSPKPCEAFADGSSPLAGRWQLLYTTSLDVLSLEINPTVTVGKIFQEIEPDGRAIQNIIELQPPFAAVNKILGSSMATLTVKLETEPVSDSRINLKFVRTEIKADSLFGRK 918 K LL +A NRG LA + + D+ V LE +NP+P P E + L G WQLLYTTS ++L ++ P +++G I+Q + D + I N+ E++ A + ++T K E VS+ R++++F R + G K Sbjct: 4 KTDLLNAIAPTNRGLLANDVQKEDILAQVTRLETKNPTPNPLEC----ADLLNGNWQLLYTTSSELLGIDRVPLLSLGNIYQCVRLDQQRIYNLAEIRSAIAG--------LVSVTAKFEV--VSNRRVDVRFDRAIFGLQATLGYK 136 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig808.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig808.17073.1 >prot_L-elsbetiae_contig808.17073.1 ID=prot_L-elsbetiae_contig808.17073.1|Name=mRNA_L-elsbetiae_contig808.17073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=411bp MSSGGDGGKDSGEQKATEDGDKGPAAPVDAELSEPAVSTSGGNDGGGGGGback to top mRNA from alignment at L-elsbetiae_contig808:7654..15199+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig808.17073.1 ID=mRNA_L-elsbetiae_contig808.17073.1|Name=mRNA_L-elsbetiae_contig808.17073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7546bp|location=Sequence derived from alignment at L-elsbetiae_contig808:7654..15199+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig808:7654..15199+ >mRNA_L-elsbetiae_contig808.17073.1 ID=mRNA_L-elsbetiae_contig808.17073.1|Name=mRNA_L-elsbetiae_contig808.17073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig808:7654..15199+ (Laminarionema elsbetiae ELsaHSoW15)back to top |