mRNA_L-elsbetiae_contig808.17072.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig808.17072.1
Unique NamemRNA_L-elsbetiae_contig808.17072.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: D8LDC6_ECTSI (Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDC6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 9.190e-24
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVSV 153
            + RW LWYDNAKLKA TETWADNLKHI+AF+TV++FW L+NNVMPPSM+SV
Sbjct:   22 QHRWALWYDNAKLKAATETWADNLKHILAFETVQEFWALFNNVMPPSMLSV 72          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A1W0ABU8_9STRA (Eukaryotic initiation factor 4E (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABU8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.060e-17
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVS 150
            + RW LWYDN K K PTETW +NLK I  FDTVEDFW L+NNV+PP+ +S
Sbjct:  189 QHRWVLWYDNPKKKLPTETWEENLKKIYTFDTVEDFWCLFNNVLPPTKLS 238          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A8K1FLQ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLQ1_PYTOL)

HSP 1 Score: 77.4 bits (189), Expect = 3.730e-16
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVSV 153
            + RWTLWYDN K +   ETW +NLK+I  FDTVEDFW LYNNV+ P+ +SV
Sbjct:   39 QHRWTLWYDNPKKRNSAETWEENLKNIFTFDTVEDFWCLYNNVLTPTKLSV 89          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A485L311_9STRA (Aste57867_15132 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L311_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.990e-16
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVS 150
            + RW LWYDN K K P E+W +NLK + +FDTVEDFW ++NN++PPS +S
Sbjct:   37 QHRWVLWYDNPKKKLPNESWEENLKVVYSFDTVEDFWCMFNNILPPSKLS 86          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A1V9YGZ3_9STRA (Eukaryotic initiation factor 4E n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGZ3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.690e-16
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVS 150
            + +W LWYDN K K  TETW +NLK I  FDTVEDFW L+NNV+PP+ +S
Sbjct:   50 QHKWVLWYDNPKKKLATETWEENLKKIYTFDTVEDFWCLFNNVLPPTKLS 99          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: W4G8U0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8U0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.650e-15
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVSV 153
            + RW LWYDN K K   E+W +NLK +  FDTVEDFWG++NN++PP+ + V
Sbjct:   49 QHRWVLWYDNPKKKLANESWEENLKVVYTFDTVEDFWGMFNNILPPTKLLV 99          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A0N7L808_PLAHL (Eukaryotic translation initiation factor 4e n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L808_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 4.950e-15
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVSV 153
            + RW LWYDN K +  TE+W +NLK+I AFDTVEDFW LYNN++ P+ +S+
Sbjct:  136 QNRWVLWYDNPKKRHSTESWEENLKNIYAFDTVEDFWCLYNNILVPTKLSI 186          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A024UKG8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKG8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.530e-15
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVSV 153
            + +W LWYDN K K  +ETW ++LK + +FDTVEDFWG++NN++PP+ + V
Sbjct:   49 QHKWVLWYDNPKKKLASETWEESLKVVYSFDTVEDFWGMFNNILPPTKLHV 99          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: A0A6G0X5M7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X5M7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.250e-15
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVS 150
            + RW LWYDN K K P E+W +NLK +  FDTVEDFW ++NN++PP+ ++
Sbjct:   56 QHRWVLWYDNPKKKLPNESWEENLKTVYTFDTVEDFWCMFNNILPPTKLA 105          
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Match: L8HF00_ACACA (Eukaryotic initiation factor, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HF00_ACACA)

HSP 1 Score: 74.3 bits (181), Expect = 1.310e-14
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPS 141
            + RW+LWYDN + +   +TW ++LKH++ FDTVEDFW LYNNVMP S
Sbjct:  102 QNRWSLWYDNPRKRTSADTWGNHLKHVVEFDTVEDFWRLYNNVMPAS 148          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig808.17072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDC6_ECTSI9.190e-2478.43Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus... [more]
A0A1W0ABU8_9STRA4.060e-1766.00Eukaryotic initiation factor 4E (Fragment) n=1 Tax... [more]
A0A8K1FLQ1_PYTOL3.730e-1662.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485L311_9STRA6.990e-1658.00Aste57867_15132 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YGZ3_9STRA8.690e-1662.00Eukaryotic initiation factor 4E n=1 Tax=Achlya hyp... [more]
W4G8U0_9STRA4.650e-1554.90Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A0N7L808_PLAHL4.950e-1558.82Eukaryotic translation initiation factor 4e n=1 Ta... [more]
A0A024UKG8_9STRA6.530e-1552.94Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0X5M7_9STRA7.250e-1554.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
L8HF00_ACACA1.310e-1459.57Eukaryotic initiation factor, putative n=1 Tax=Aca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig808contigL-elsbetiae_contig808:612..764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog2880.D8LDC6
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1670@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816893.007637-CDS-L-elsbetiae_contig808:611..7641622816893.007637-CDS-L-elsbetiae_contig808:611..764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 612..764 -
1691683892.4362192-CDS-L-elsbetiae_contig808:611..7641691683892.4362192-CDS-L-elsbetiae_contig808:611..764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig808 612..764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig808.17072.1prot_L-elsbetiae_contig808.17072.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig808 612..764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig808.17072.1

>prot_L-elsbetiae_contig808.17072.1 ID=prot_L-elsbetiae_contig808.17072.1|Name=mRNA_L-elsbetiae_contig808.17072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
ERRWTLWYDNAKLKAPTETWADNLKHIMAFDTVEDFWGLYNNVMPPSMVS
V
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mRNA from alignment at L-elsbetiae_contig808:612..764-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig808.17072.1 ID=mRNA_L-elsbetiae_contig808.17072.1|Name=mRNA_L-elsbetiae_contig808.17072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig808:612..764- (Laminarionema elsbetiae ELsaHSoW15)
GAGCGAAGATGGACGTTGTGGTACGACAACGCGAAGCTCAAGGCTCCGAC GGAGACCTGGGCGGATAACCTCAAGCACATCATGGCCTTCGACACCGTCG AGGATTTCTGGGGCCTGTACAACAATGTCATGCCGCCCAGCATGGTGTCG GTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig808:612..764-

>mRNA_L-elsbetiae_contig808.17072.1 ID=mRNA_L-elsbetiae_contig808.17072.1|Name=mRNA_L-elsbetiae_contig808.17072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig808:612..764- (Laminarionema elsbetiae ELsaHSoW15)
GAGCGAAGATGGACGTTGTGGTACGACAACGCGAAGCTCAAGGCTCCGAC
GGAGACCTGGGCGGATAACCTCAAGCACATCATGGCCTTCGACACCGTCG
AGGATTTCTGGGGCCTGTACAACAATGTCATGCCGCCCAGCATGGTGTCG
GTAGAGCGAAGATGGACGTTGTGGTACGACAACGCGAAGCTCAAGGCTCC
GACGGAGACCTGGGCGGATAACCTCAAGCACATCATGGCCTTCGACACCG
TCGAGGATTTCTGGGGCCTGTACAACAATGTCATGCCGCCCAGCATGGTG
TCGGTA
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