mRNA_L-elsbetiae_contig8077.17069.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8077.17069.1 vs. uniprot
Match: D7FTV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV7_ECTSI) HSP 1 Score: 373 bits (958), Expect = 1.410e-117 Identity = 323/515 (62.72%), Postives = 355/515 (68.93%), Query Frame = 1 Query: 1 RSSLEHAYGMAASYGREDSD----SPLRAHQHALAGRGVPESSQEIMHDTQEWLKGVLKDAAESDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSAKTGGALFSHVGAARHLDTERSTAFNPPTAAEGMAXXXXXXXXXXXXXXXXXXXXXXAYPRSPRYTPPVPCRAPPPPAVTFDSVPLTAMPSVAAAHXXXXXXXXXXXXXXXXXXHEAQSTQPRHHTPSVRFRAATTTVAGGLKQAFAHAAELVTVQR----------------GGDNDSRAADGAGSXXXXXXXXXXXXXXXGPVAKRKGSKTKVQGEKELGRGARVAVAQQETPTAEGTGGDAAESATGAV--LLPGKELVKRMKDVSQYIVARSKTAEEAYGDVWEVIMEMADRAASRGCNVPTEDYSSTSVPCYGALVVTPDLATYSSDTFFRFQETLNRGLKHLPMEHDISVEAFHPEAVSEATPLDHRFTRSPFPSLHVCYHGLRGDNDTALHPLAGA 1479 RSSLEHAYGMAASYGRE+++ S + AHQH LAGRGVPESS EI+ TQEWL VLKDAA SD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SA G L+S G LDTERST+F+PPTAAE XXXXXXXXXXXXXXXXXXXXXX + T + TA+P AH XXXXXXXXXXXX PRHHTPSVRFRAATTTVAGG+KQAFAHAAELVTV GGD+D+ A+ GS + + E + G V ET EG GGD S A LLPGKELVKRMK++SQY+VARSKTAEEAY D WEV+MEMADRAASRGC+VPTEDY+S+S PCYGAL+VTPDLATYSSDTF RFQETLNRGLKHLPMEHDISVEAFHPEAVS+A+PLDHRFTRSPFP+LHVCYHGLR + TAL+P A Sbjct: 260 RSSLEHAYGMAASYGREEAEHGVGSSMWAHQHVLAGRGVPESSVEILQATQEWLTEVLKDAAASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAA-VMSAGKGRPLYSRTGTGGGLDTERSTSFSPPTAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTASA---TAVPD---AHLSSESGXXXXXXXXXXXX--XXXXXPRHHTPSVRFRAATTTVAGGIKQAFAHAAELVTVHXXXXXXXXXXXXXXXXDGGDSDAGAS---GSQDISVEAQLL----------------ETREEDNVNGGVAVEELAAET---EGQGGDEEASGKAAEPPLLPGKELVKRMKNISQYVVARSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALLVTPDLATYSSDTFLRFQETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLR-EEGTALNPRVAA 742
BLAST of mRNA_L-elsbetiae_contig8077.17069.1 vs. uniprot
Match: A0A6H5KW26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW26_9PHAE) HSP 1 Score: 303 bits (775), Expect = 1.990e-95 Identity = 174/272 (63.97%), Postives = 197/272 (72.43%), Query Frame = 1 Query: 682 TQPRHHTPSVRFRAATTTVAGGLKQAFAHAAELVTVQRGGDNDSRAADGAGSXXXXXXXXXXXXXXXGPVAKRKGSKTKVQGEKELGRGARVAVAQQETPTAEGTGGDAAESATGAV--LLPGKELVKRMKDVSQYIVARSKTAEEAYGDVWEVIMEMADRAASRGCNVPTEDYSSTSVPCYGALVVTPDLATYSSDTFFRFQ---ETLNRGLKHLPMEHDISVEAFHPEAVSEATPLDHRFTRSPFPSLHVCYHGLRGDNDTALHPLAGAA 1482 TQPRHHTPSVRFRAATTTVAGG+KQAFA A ELVTV+ XXXX V + + + + E + G V ++ EG GGD SA A LLPGKELVKRMK++SQYIV RSKTAEEAY D WEV+MEMADRAASRGC+VPTEDY+S+S PCYGAL+VTPD+ATYSSDTF RFQ ETLNRGLKHLPMEHDISVEAFHPEAVS+A+PLDHRFTRSP+P+LHVCYHGLR + TAL+P AA Sbjct: 46 TQPRHHTPSVRFRAATTTVAGGIKQAFALATELVTVRHHRXXXXXXXXXXXXXXXXDSDAGASGSKDISV---EAQRWETREEDNVNGGVAVEKLKKLAAETEGQGGDEEASAEAAKPPLLPGKELVKRMKNISQYIVTRSKTAEEAYSDTWEVVMEMADRAASRGCDVPTEDYTSSSAPCYGALLVTPDIATYSSDTFLRFQAKVETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPYPTLHVCYHGLR-EKGTALNPRVAAA 313
BLAST of mRNA_L-elsbetiae_contig8077.17069.1 vs. uniprot
Match: A0A6H5KUH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH9_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.370e-7 Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1 Query: 1 RSSLEHAYGMAASYGREDSD----SPLRAHQHALAGRGVPESSQEIMHDTQ 141 RSSLEHAYGMAASYGRE+++ S + AHQH LAGR VPESS EI+ TQ Sbjct: 260 RSSLEHAYGMAASYGREEAEQGAGSSMWAHQHVLAGRRVPESSVEILQATQ 310 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8077.17069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8077.17069.1 >prot_L-elsbetiae_contig8077.17069.1 ID=prot_L-elsbetiae_contig8077.17069.1|Name=mRNA_L-elsbetiae_contig8077.17069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=486bp MAASYGREDSDSPLRAHQHALAGRGVPESSQEIMHDTQEWLKGVLKDAAEback to top mRNA from alignment at L-elsbetiae_contig8077:260..4712+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8077.17069.1 ID=mRNA_L-elsbetiae_contig8077.17069.1|Name=mRNA_L-elsbetiae_contig8077.17069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4453bp|location=Sequence derived from alignment at L-elsbetiae_contig8077:260..4712+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8077:260..4712+ >mRNA_L-elsbetiae_contig8077.17069.1 ID=mRNA_L-elsbetiae_contig8077.17069.1|Name=mRNA_L-elsbetiae_contig8077.17069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2916bp|location=Sequence derived from alignment at L-elsbetiae_contig8077:260..4712+ (Laminarionema elsbetiae ELsaHSoW15)back to top |