mRNA_L-elsbetiae_contig8072.17065.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8072.17065.1
Unique NamemRNA_L-elsbetiae_contig8072.17065.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 4.490e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            AIGELEKVLE GRMHVNVLYTFRSVSRAIPMVSGSGDPNK ALHMNTFKVLRPEM+KL+A M FYESAVQV
Sbjct:   64 AIGELEKVLEFGRMHVNVLYTFRSVSRAIPMVSGSGDPNKTALHMNTFKVLRPEMKKLTAIMEFYESAVQV 134          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: A0A7S1U2Y5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2Y5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.510e-13
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A  ++E++LE G+  V++LYTFRSVSRAIPM++ +  PNKD ++  T+++LRPE+ K+   M F +  + +
Sbjct:   35 ATAQIERILEQGQHFVHMLYTFRSVSRAIPMITDANAPNKDDMNRRTYEILRPEVVKIKELMDFQDHVIHI 105          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: UPI000644A63A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A63A)

HSP 1 Score: 63.5 bits (153), Expect = 4.430e-10
Identity = 27/71 (38.03%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A+ +LE++L+ G  ++N++YT+RS S+A+P V  S  PNK  ++   ++VL PE++KL   M F    ++V
Sbjct:   60 AMEKLEELLKAGEQYINMVYTYRSCSKALPQVKNSEQPNKQQIYEGYYEVLEPEIKKLKDFMYFQRDTIKV 130          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: F0YQA9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQA9_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 2.060e-9
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A  ++E +L  G  H+++LYTFRSV RA+PMV+  G  +K+ L++ TF  L+P++ K+   M F E  V +
Sbjct:   63 ATADVEALLLEGSEHIHMLYTFRSVGRAVPMVNDQGLQSKNELNLQTFYALQPQIAKMRRLMDFQEKGVAI 133          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 2.890e-9
Identity = 27/71 (38.03%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A  ++E +L  G  H+++LYTFRS+ RA+PMV+  G  +K+ +++ TF  L+P++ K+   M F E  V +
Sbjct:   64 ATADVEALLLEGSEHIHMLYTFRSIGRAVPMVNDQGRQSKNEINLQTFYALQPQIAKIRRLMDFQEKGVAI 134          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: A0A8J4PMG3_9MYCE (DUF1394 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMG3_9MYCE)

HSP 1 Score: 60.5 bits (145), Expect = 5.400e-9
Identity = 26/70 (37.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQ 210
            ++ ++E++L+VG   +N++YT+RS S+A+P V  S   NK  ++  TF+VL PE++KL   M F +  ++
Sbjct:   66 SMEKMEEILKVGEGFINMVYTYRSCSKALPQVKTSEQTNKQQIYEGTFEVLEPEIKKLKDFMYFQKDTIK 135          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: F0ZFF2_DICPU (Rac-binding component of scar regulatory complex n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZFF2_DICPU)

HSP 1 Score: 60.1 bits (144), Expect = 7.380e-9
Identity = 26/71 (36.62%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A+ ++E+VL++G   +N++YT+RS S+A+P V  +   NK  ++  TF+VL PE++KL   M F +  +++
Sbjct:   67 AMEKMEEVLKMGDQFINMVYTYRSCSKALPTVKTADQANKTQIYEGTFEVLEPEIKKLKDFMYFQKDTIKL 137          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: D3BK91_POLPP (Component of SCAR regulatory complex n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK91_POLPP)

HSP 1 Score: 59.7 bits (143), Expect = 1.010e-8
Identity = 26/71 (36.62%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A+ +++++L+ G   +N++YT+RS S+A+P V  S   NK  ++  TF+VL PE++KL   M F    ++V
Sbjct:   60 AMEKMDELLKAGEHFINMVYTYRSCSKALPQVKTSEQANKQQIYEGTFEVLEPEIKKLKDFMYFQRDTIKV 130          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: A0A4P9X6Z7_9FUNG (DUF1394 domain-containing protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X6Z7_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 2.580e-8
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAV 207
            A   L+ V++ GR  ++ LY++RS  RAIP V  SG+ N+  L+  T+KVL+PE+EK+ A M F + AV
Sbjct:   53 AQARLDTVVQRGRALLSRLYSYRSCGRAIPQVQ-SGEQNRAELYAETYKVLKPEVEKMKAFMQFRDEAV 120          
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Match: F4QDG7_CAVFA (Component of SCAR regulatory complex n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QDG7_CAVFA)

HSP 1 Score: 58.2 bits (139), Expect = 3.540e-8
Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKVLRPEMEKLSATMLFYESAVQV 213
            A+ +++ +L  G   +N++YT+RS S+A+P V  S   NK  ++  TF+VL PE++KL   M F    +++
Sbjct:   62 AMEKMDDLLRQGETFINMVYTYRSCSKALPQVKTSEQANKQQIYEGTFEVLEPEIKKLKDLMYFQRDTIKI 132          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8072.17065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI4.490e-3391.55UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1U2Y5_9STRA4.510e-1343.66Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI000644A63A4.430e-1038.03hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0YQA9_AURAN2.060e-940.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YL26_AURAN2.890e-938.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J4PMG3_9MYCE5.400e-937.14DUF1394 domain-containing protein n=1 Tax=Polyspho... [more]
F0ZFF2_DICPU7.380e-936.62Rac-binding component of scar regulatory complex n... [more]
D3BK91_POLPP1.010e-836.62Component of SCAR regulatory complex n=1 Tax=Polys... [more]
A0A4P9X6Z7_9FUNG2.580e-844.93DUF1394 domain-containing protein n=1 Tax=Caulochy... [more]
F4QDG7_CAVFA3.540e-835.21Component of SCAR regulatory complex n=1 Tax=Caven... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8072contigL-elsbetiae_contig8072:7678..8574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D7G6Y8
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816892.3848412-CDS-L-elsbetiae_contig8072:7677..77431622816892.3848412-CDS-L-elsbetiae_contig8072:7677..7743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8072 7678..7743 -
1691683891.9689128-CDS-L-elsbetiae_contig8072:7677..77431691683891.9689128-CDS-L-elsbetiae_contig8072:7677..7743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8072 7678..7743 -
1622816892.3954058-CDS-L-elsbetiae_contig8072:8427..85741622816892.3954058-CDS-L-elsbetiae_contig8072:8427..8574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8072 8428..8574 -
1691683891.984492-CDS-L-elsbetiae_contig8072:8427..85741691683891.984492-CDS-L-elsbetiae_contig8072:8427..8574Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8072 8428..8574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8072.17065.1prot_L-elsbetiae_contig8072.17065.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8072 7678..8574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8072.17065.1

>prot_L-elsbetiae_contig8072.17065.1 ID=prot_L-elsbetiae_contig8072.17065.1|Name=mRNA_L-elsbetiae_contig8072.17065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
AIGELEKVLEVGRMHVNVLYTFRSVSRAIPMVSGSGDPNKDALHMNTFKV
LRPEMEKLSATMLFYESAVQV
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mRNA from alignment at L-elsbetiae_contig8072:7678..8574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8072.17065.1 ID=mRNA_L-elsbetiae_contig8072.17065.1|Name=mRNA_L-elsbetiae_contig8072.17065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=897bp|location=Sequence derived from alignment at L-elsbetiae_contig8072:7678..8574- (Laminarionema elsbetiae ELsaHSoW15)
GCGATCGGGGAGCTTGAGAAGGTTCTGGAGGTGGGCCGAATGCACGTCAA CGTGCTCTACACGTTCAGGAGCGTGTCGCGAGCCATCCCGATGGTGAGCG GCAGCGGAGACCCCAACAAGGACGCCCTGCACATGAACACCTTTAAGGTG AGCGAGATCTCGGGGCTACAGGGATGGGGAGGAGGTTGTGAGGCGCTTCC GCTTCGGAGGGATGTGGTTGTGCACTGCACGTACTCAACAAAGATGAGCA ACCTGAGGGCACCATCTGCCCTGTTCTCATCCCAGGAAGAAAATTGATGC GCCTTGTCCATATCTCCCACGATGCTCTGCTGACTTTGCTTGCCGGCGCG CACACCCTTGGTGGAAGAACATGGCTTCGTGGCCCCGGGTTAAGGGGATG GGGACGAGGGTTGCGAGGCGCCTCCTCTTCGGGGTGATGTGTTCTATACT GAGCGTACATACTCAACAAAGATGAGCAACCTGAGGCACCATCTGCCCTG TTTTTATCCCGGGAAGAAAAGTGATGCACGCTGTCCATATATATCTCCCA CGATGCTCTGCTGACTTATTTCGTCGGCGCGCACGCCCTTTGGTGGAAGA ACATGGCTTCGTTCACAAAAGTCAGTCAGCATGTGCGGCCTTAAAAGGGG GAGCGCCGGACAAGACGAGTGCGCTTGCTCTCCTCTCTTTCGGCTCTGCC CTACTCCAGAGACCGCTGCCATACTTGCCACGCGTCCAAGGCTTTATAGC GCTTAACTGCTGTGTGTAGCACCCCCACCTGGGATCAACCACGTGGCCCC GTCGCCCCCGTGATTTCTCATTCCGTGTTAGGTTCTGCGGCCGGAGATGG AGAAGCTCAGCGCGACCATGCTCTTCTACGAGAGCGCCGTCCAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8072:7678..8574-

>mRNA_L-elsbetiae_contig8072.17065.1 ID=mRNA_L-elsbetiae_contig8072.17065.1|Name=mRNA_L-elsbetiae_contig8072.17065.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig8072:7678..8574- (Laminarionema elsbetiae ELsaHSoW15)
GCGATCGGGGAGCTTGAGAAGGTTCTGGAGGTGGGCCGAATGCACGTCAA
CGTGCTCTACACGTTCAGGAGCGTGTCGCGAGCCATCCCGATGGTGAGCG
GCAGCGGAGACCCCAACAAGGACGCCCTGCACATGAACACCTTTAAGGCG
ATCGGGGAGCTTGAGAAGGTTCTGGAGGTGGGCCGAATGCACGTCAACGT
GCTCTACACGTTCAGGAGCGTGTCGCGAGCCATCCCGATGGTGAGCGGCA
GCGGAGACCCCAACAAGGACGCCCTGCACATGAACACCTTTAAGGTTCTG
CGGCCGGAGATGGAGAAGCTCAGCGCGACCATGCTCTTCTACGAGAGCGC
CGTCCAGGTAGTTCTGCGGCCGGAGATGGAGAAGCTCAGCGCGACCATGC
TCTTCTACGAGAGCGCCGTCCAGGTA
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