mRNA_L-elsbetiae_contig807.17060.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig807.17060.1
Unique NamemRNA_L-elsbetiae_contig807.17060.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: D8LTE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTE4_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 6.630e-160
Identity = 235/258 (91.09%), Postives = 249/258 (96.51%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRLASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVNNCWG 774
            TGK F+VTGGTQGMGL+I+ACIAKAGA+AVTISAR+QDTGEKAVA+L EHTPSC+F+FVPADVA EEDC+RL SEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSV AHGGIPKVSTYSVSKAALNACTKMHAYELK +RI RVNAINVGWTLTDNEH LQRVEMGS++WIE+ADK HAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMV+NCWG
Sbjct:   33 TGKMFVVTGGTQGMGLVISACIAKAGASAVTISARSQDTGEKAVAQLTEHTPSCRFFFVPADVAKEEDCSRLVSEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVVAHGGIPKVSTYSVSKAALNACTKMHAYELKRSRI-RVNAINVGWTLTDNEHVLQRVEMGSENWIEDADKGHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVDNCWG 289          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: A0A6H5KWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ8_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 4.050e-110
Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 1
Query:  238 MGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVNNCWG 774
            MGCIDGLVNCAAWTARATLDTTTV+VWDRMMNTNVRGPFLLVQAVSKSMRSKG PGSIVNISSV AHGGIPKVSTYSVSKAALNACTKMHAYELK ARI RVNAINVGWTLTDNEH LQRVEMGS++WIE+ADK HAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMV+NCWG
Sbjct:    1 MGCIDGLVNCAAWTARATLDTTTVEVWDRMMNTNVRGPFLLVQAVSKSMRSKGHPGSIVNISSVVAHGGIPKVSTYSVSKAALNACTKMHAYELKGARI-RVNAINVGWTLTDNEHVLQRVEMGSENWIEDADKGHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVDNCWG 178          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: A0A6V1MI94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MI94_HETAK)

HSP 1 Score: 234 bits (597), Expect = 1.550e-69
Identity = 126/256 (49.22%), Postives = 171/256 (66.80%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRLASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRP--GSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVN 762
            TGK F+VTGG QG+G  IA C+A  GA  V I+ R+++ GEK  + +     +CQ  ++ ADVA E  C  L   A    G + GLVN A  T R TL++T    +D ++ TN++GPF L +  +++MR       GS+VNISS+A+H G P +S YSV+KAALNA TK+HA EL+  R+ RVNA+ +GWTLTDNEHK+Q VE G D W+E+ D  H  GR+LRPVD+AA  G LLSDA+ M++G ++D HP+ VN
Sbjct:   67 TGKNFIVTGGGQGLGRNIAECLAAQGAAGVLITCRSEEQGEKVKSYINSTNTNCQAEWMVADVAAEAQCAALVRRALGRFGALHGLVNAAGLTTRGTLESTDEATFDALLATNLKGPFFLTKHAARAMRDTAGASGGSVVNISSIASHAGAPFISCYSVTKAALNAMTKVHALELQRDRV-RVNALAIGWTLTDNEHKIQLVERGPD-WLEKGDAAHPFGRILRPVDVAAAAGFLLSDAALMISGAVLDQHPDFVN 320          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: R1CSP3_EMIHU (Short chain dehydrogenase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CSP3_EMIHU)

HSP 1 Score: 213 bits (542), Expect = 5.840e-62
Identity = 132/282 (46.81%), Postives = 167/282 (59.22%), Query Frame = 1
Query:    4 GKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHT---PSCQFYFVPADVATEEDCTRLASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVNNCWG*AEGLHVSGLVSAAAPSPFSSR 840
            G+ +L+TGGTQG+G  IA  +   GA  V + ARN + G KAV RL          + +FV AD++      +  + A   MG IDG+VN AA TAR  L +TT + WD MM  N R PFL+ QA ++ M  KG  GSIVNISSVA  GG P +  YSVSKAA +A T+ +A EL    I RVN + +GW  TDNE  LQR   G DDW+++AD    +GR+LRP D+AATV  LLSDAS MMTG +VDLHPE            + SG++S  A      R
Sbjct:   17 GRNYLITGGTQGLGFEIATQLKACGAAKVAVIARNAERGTKAVERLQAAAGVQEPFEAFFVEADLSDATGPGKAVALALAAMGAIDGVVNAAATTARGNLASTTAEDWDAMMACNARAPFLITQAATRHMIEKGIRGSIVNISSVAGKGGAPFLMAYSVSKAAASALTRNNAAELAPHGI-RVNCVEMGWCATDNEDALQRSVKG-DDWLQQADASQPLGRILRPADVAATVCFLLSDASLMMTGNVVDLHPE------------YSSGMISRLADEAAGGR 284          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: A0A7S2HYS1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYS1_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.150e-61
Identity = 132/255 (51.76%), Postives = 166/255 (65.10%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRL---ASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSM-RSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPE 753
            TG+ F+VTGGTQG+GL IA  +   GA  + + +R+Q  GEK    L     SC   FV AD++  ED + +   A+EA   +G I GLVN AA T R  L TTT + +D  M  NVR PFL+ Q V+K M  +  + GSIVNI SVAA GG P +  YS +KAAL++ TK +A EL    I RVN +N+GW LT+NE KLQR   G DDW E+AD    +GR+LRP D+AATVG LLSDASAMMTG++V LHPE
Sbjct:   16 TGRVFVVTGGTQGLGLAIARFLKGNGAAGLVLVSRSQAKGEKVCKELQGDDGSCTVAFVSADLSKAEDASAVVPKAAEAMSGVGPISGLVNAAATTGRGNLLTTTAEDFDMQMALNVRAPFLVSQGVAKHMIENNVKGGSIVNICSVAALGGAPFIMAYSAAKAALSSMTKNNAAELAPKGI-RVNGVNMGWCLTENEDKLQRQNSG-DDWAEKADAGVPIGRILRPEDVAATVGFLLSDASAMMTGSVVGLHPE 268          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: A0A6V2PCJ6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PCJ6_9STRA)

HSP 1 Score: 208 bits (530), Expect = 3.470e-60
Identity = 130/255 (50.98%), Postives = 165/255 (64.71%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRLASEADRLM---GCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSM-RSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPE 753
            +G+ F++TGGTQG+GL IA  +   GA  + + +R+++ GEK    L E+T  C   FV AD+   ED + + ++A   M   G I GLVN AA T R  L TTT + +D  M  NVR PFL+ Q  +K M  +K R GSIVNI SVAA GG P +  YS SKAAL A TK +A EL    I RVN +N+GW LT+NE KLQR   G DDW  +AD    +GR+LRP D+AATVG LLSDASAMMTG+++ LHPE
Sbjct:   18 SGRVFVITGGTQGLGLAIARYLKGNGAAGLVLVSRSKEKGEKVCKELEENT--CVVKFVAADLGNTEDASSVIAKAAEAMSGVGPISGLVNAAATTGRGNLLTTTAEDFDIQMALNVRAPFLVSQGAAKHMIENKVRGGSIVNICSVAALGGAPFIMAYSASKAALAAMTKNNAAELAPKGI-RVNGVNMGWCLTENEDKLQRKNSG-DDWAVKADAGVPIGRILRPEDVAATVGFLLSDASAMMTGSVLSLHPE 268          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: K0TJ38_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJ38_THAOC)

HSP 1 Score: 206 bits (523), Expect = 4.490e-59
Identity = 126/266 (47.37%), Postives = 166/266 (62.41%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPS--CQFYFVPADVATEEDCTRLASEADRLMG-------CIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRP---GSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVN 762
            +G+ F+VTGGTQG+GL IA  + + GA+ V + +R+    E A+  + +H PS  C   FV AD+A   + + +   A   +         I G+VN AA TAR  L +TT D++D   + NVRGPFLL QA SK M   G P   GS+VNI SVAA GG P +  YS +K+AL   TK +A EL    I RVN IN+GWTLT+NEHKLQ     ++ W EEADK   +GR+LRP D+A++V  LLS AS MMTG I+DLHPE+ +
Sbjct:   13 SGRFFVVTGGTQGLGLEIAKQLKQCGASGVVLVSRSPSKAEAAIREIGDHCPSSTCHAVFVKADMAVSSEVSSIVPRAVEELAKHCGSPIVITGVVNAAALTARGNLASTTPDMFDSQFSVNVRGPFLLTQAASKHMIEAGVPRGLGSVVNICSVAADGGAPFIMGYSCAKSALVTLTKNNAAELAPKGI-RVNGINMGWTLTENEHKLQSEVHKNERWHEEADKSVPLGRILRPADVASSVLFLLSGASTMMTGAILDLHPEIAS 277          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: I0I718_CALAS (Putative oxidoreductase n=2 Tax=Caldilinea aerophila TaxID=133453 RepID=I0I718_CALAS)

HSP 1 Score: 203 bits (516), Expect = 1.910e-58
Identity = 116/253 (45.85%), Postives = 154/253 (60.87%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRLASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMV 759
            T    +VTGGTQG+G  IA   A+  A  + I  RN+  G++  A + E    C   FVPAD+A+ +DC  +   AD   G IDGLVNCAA T R ++D  T ++WDR+M  N+R PF L+Q  ++ MR +GR GSIVNI S+ AHGG+P ++ YS SK  L   TK  A  L A RI RVN INVGW  T NE  +QR E   D+W+E AD +   GR+LRP D++  V  LLS   AMM+G ++D   + +
Sbjct:    5 TDLIIVVTGGTQGLGEDIARRAAQHHAAGLIICGRNEQKGQRVAAEITES--GCPTVFVPADLASIDDCRTVIRAADERFGRIDGLVNCAASTERGSVDDATPELWDRIMAINLRAPFFLMQEAARVMRREGRGGSIVNIGSINAHGGLPNLTVYSTSKGGLMTLTKNAAVVLGADRI-RVNCINVGWMFTPNEDIVQRAEGRGDNWLEVADAQMPFGRILRPPDVSGLVMWLLSAEGAMMSGAVIDFDHQRI 254          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: A0A7S1APH9_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1APH9_NOCSC)

HSP 1 Score: 199 bits (507), Expect = 8.340e-57
Identity = 123/253 (48.62%), Postives = 161/253 (63.64%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRLASEADRLMGC-IDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRS-KGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPE 753
            +G  ++VTGGTQG+GL IA  +   GA  + + AR +  GE AVA L   T  C  +FV  D+A        A+ +  ++G  +DGLVN A  T R  L TTT + +D+  + N R PFLL QA++  ++  K R  SIVNISS+AA GG P ++ YS SKAALN  T  +A EL    I RVNAIN+GWT+TDNEH+L   + G++ W+ EAD  H M RLLRPVD+A TV  LLS AS MMTG ++DLHP+
Sbjct:   23 SGGHYIVTGGTQGLGLEIARQLKATGAGKLVLMARTRSRGEAAVAELSNAT--CTAHFVEVDIADAASLQAAAAASFEILGDRVDGLVNAAGTTERGNLMTTTAEGFDKQFDINARAPFLLTQALAVHLKERKLRGASIVNISSLAAKGGAPFITAYSASKAALNVLTMNNAVELAEHGI-RVNAINMGWTVTDNEHELMVKKAGAE-WLTEADAAHPMKRLLRPVDVACTVCFLLSPASTMMTGNVLDLHPD 271          
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Match: A0A496R851_9SPIR (Short-chain dehydrogenase n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A496R851_9SPIR)

HSP 1 Score: 198 bits (503), Expect = 1.730e-56
Identity = 110/253 (43.48%), Postives = 157/253 (62.06%), Query Frame = 1
Query:    1 TGKTFLVTGGTQGMGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADVATEEDCTRLASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTNVRGPFLLVQAVSKSMRSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALNACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADKEHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMV 759
            +G+ ++VTGGTQG+G  IA  +A  GA  + I  RN + GE+A A +      C+F  V AD+  EEDC R+ S+A  + G I GLVN A  T R+ ++  TV+ W+ MMN N R PFLL+Q   + M+ KG  GSIVNI S  AHGG P +  YS SK  L   TK  A+ L++ RI RVN + +GW  T NEH++Q      ++W+E+A+K     RLL+P D++  V +LL+D S MMTG+++D +  ++
Sbjct:    9 SGRNYIVTGGTQGLGRAIALDLAAQGADGILICGRNAENGERARADIESAGSRCRF--VRADLQFEEDCRRVVSDAVAVFGIIHGLVNAAGLTDRSGIEDATVEHWNLMMNVNARAPFLLIQDTVRHMKEKGIHGSIVNIISDQAHGGSPNLMAYSASKGTLATMTKNIAHALRSDRI-RVNGVLIGWMNTPNEHRIQIASGKPENWLEDAEKSQPFKRLLKPEDVSGFVSYLLNDVSEMMTGSLIDFNQNVI 258          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig807.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE4_ECTSI6.630e-16091.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ8_9PHAE4.050e-11093.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V1MI94_HETAK1.550e-6949.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1CSP3_EMIHU5.840e-6246.81Short chain dehydrogenase n=1 Tax=Emiliania huxley... [more]
A0A7S2HYS1_9STRA1.150e-6151.76Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V2PCJ6_9STRA3.470e-6050.98Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0TJ38_THAOC4.490e-5947.37Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
I0I718_CALAS1.910e-5845.85Putative oxidoreductase n=2 Tax=Caldilinea aerophi... [more]
A0A7S1APH9_NOCSC8.340e-5748.62Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A496R851_9SPIR1.730e-5643.48Short-chain dehydrogenase n=1 Tax=Spirochaetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig807contigL-elsbetiae_contig807:454..7024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score446.4
Seed ortholog evalue8.4e-123
Seed eggNOG ortholog2880.D8LTE4
Preferred nameTR-1
KEGG rclassRC00144
KEGG koko:K08081
KEGG ReactionR02832
KEGG Pathwayko00960,ko01100,ko01110,map00960,map01100,map01110
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
EC1.1.1.206
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-02_006020.1
Exons9
Model size1493
Cds size738
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.9641912-UTR-L-elsbetiae_contig807:453..4921622816891.9641912-UTR-L-elsbetiae_contig807:453..492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig807 454..492 +
1691683891.6820016-UTR-L-elsbetiae_contig807:453..4921691683891.6820016-UTR-L-elsbetiae_contig807:453..492Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig807 454..492 +
1622816892.0903232-UTR-L-elsbetiae_contig807:6308..70241622816892.0903232-UTR-L-elsbetiae_contig807:6308..7024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig807 6309..7024 +
1691683891.793594-UTR-L-elsbetiae_contig807:6308..70241691683891.793594-UTR-L-elsbetiae_contig807:6308..7024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig807 6309..7024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.9745245-CDS-L-elsbetiae_contig807:492..5151622816891.9745245-CDS-L-elsbetiae_contig807:492..515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 493..515 +
1691683891.693974-CDS-L-elsbetiae_contig807:492..5151691683891.693974-CDS-L-elsbetiae_contig807:492..515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 493..515 +
1622816891.9871032-CDS-L-elsbetiae_contig807:767..8701622816891.9871032-CDS-L-elsbetiae_contig807:767..870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 768..870 +
1691683891.7088907-CDS-L-elsbetiae_contig807:767..8701691683891.7088907-CDS-L-elsbetiae_contig807:767..870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 768..870 +
1622816891.9970002-CDS-L-elsbetiae_contig807:1150..12431622816891.9970002-CDS-L-elsbetiae_contig807:1150..1243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 1151..1243 +
1691683891.7188697-CDS-L-elsbetiae_contig807:1150..12431691683891.7188697-CDS-L-elsbetiae_contig807:1150..1243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 1151..1243 +
1622816892.0087228-CDS-L-elsbetiae_contig807:1638..17461622816892.0087228-CDS-L-elsbetiae_contig807:1638..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 1639..1746 +
1691683891.7298107-CDS-L-elsbetiae_contig807:1638..17461691683891.7298107-CDS-L-elsbetiae_contig807:1638..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 1639..1746 +
1622816892.0313911-CDS-L-elsbetiae_contig807:2567..26281622816892.0313911-CDS-L-elsbetiae_contig807:2567..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 2568..2628 +
1691683891.7396262-CDS-L-elsbetiae_contig807:2567..26281691683891.7396262-CDS-L-elsbetiae_contig807:2567..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 2568..2628 +
1622816892.0434368-CDS-L-elsbetiae_contig807:3071..31801622816892.0434368-CDS-L-elsbetiae_contig807:3071..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 3072..3180 +
1691683891.7509558-CDS-L-elsbetiae_contig807:3071..31801691683891.7509558-CDS-L-elsbetiae_contig807:3071..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 3072..3180 +
1622816892.0573413-CDS-L-elsbetiae_contig807:3518..36211622816892.0573413-CDS-L-elsbetiae_contig807:3518..3621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 3519..3621 +
1691683891.7600765-CDS-L-elsbetiae_contig807:3518..36211691683891.7600765-CDS-L-elsbetiae_contig807:3518..3621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 3519..3621 +
1622816892.0692532-CDS-L-elsbetiae_contig807:4340..44571622816892.0692532-CDS-L-elsbetiae_contig807:4340..4457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 4341..4457 +
1691683891.7694306-CDS-L-elsbetiae_contig807:4340..44571691683891.7694306-CDS-L-elsbetiae_contig807:4340..4457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 4341..4457 +
1622816892.0805416-CDS-L-elsbetiae_contig807:6287..63081622816892.0805416-CDS-L-elsbetiae_contig807:6287..6308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 6288..6308 +
1691683891.7826421-CDS-L-elsbetiae_contig807:6287..63081691683891.7826421-CDS-L-elsbetiae_contig807:6287..6308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig807 6288..6308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig807.17060.1prot_L-elsbetiae_contig807.17060.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig807 493..6308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig807.17060.1

>prot_L-elsbetiae_contig807.17060.1 ID=prot_L-elsbetiae_contig807.17060.1|Name=mRNA_L-elsbetiae_contig807.17060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=246bp
MGLIIAACIAKAGATAVTISARNQDTGEKAVARLVEHTPSCQFYFVPADV
ATEEDCTRLASEADRLMGCIDGLVNCAAWTARATLDTTTVDVWDRMMNTN
VRGPFLLVQAVSKSMRSKGRPGSIVNISSVAAHGGIPKVSTYSVSKAALN
ACTKMHAYELKAARISRVNAINVGWTLTDNEHKLQRVEMGSDDWIEEADK
EHAMGRLLRPVDIAATVGHLLSDASAMMTGTIVDLHPEMVNNCWG*
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mRNA from alignment at L-elsbetiae_contig807:454..7024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig807.17060.1 ID=mRNA_L-elsbetiae_contig807.17060.1|Name=mRNA_L-elsbetiae_contig807.17060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6571bp|location=Sequence derived from alignment at L-elsbetiae_contig807:454..7024+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGGGAAGACCTTCCTGGTTACTGGAGGAACGCAAGGAATGGGCCTTAT CATTGCAGCCTGGTAGGGCACGTGTCGTGTATGGTAGTTGCGTAGCTTCC ACAGTTGCTCTGCAGACACGTATGTAAAAGAACCGAGCACATAACATGCC GTCCACGCGCGCACCATCAGCGAAACCCAATCTCGCCCGTCGTAGGTATG TACATCGATGTTTGATGCCACGGGGCAGCAACGCAGATCACCCTCAAGCT GCTTAATGCAGACAAGTCCGCCGTCTCTGTTCGGTGTCTCCCTCCGTGCC GCAAACGCTATTAGCATCGCTAAGGCTGGCGCGACCGCGGTGACGATCAG TGCACGAAACCAGGACACCGGCGAAAAAGCTGTCGCCCGACTTGTCGAAC ATACACCGTCCTGTCAGGTAATTTAAACATACATACATACATACATATGT GACAGACAAAATCACTCTCGGTTCTGTGACTGCGTACATACTCTTTGCAA CCGTGGTGGTGGCGGCGTGTGCTGTGTGTTGGCATGGGTTGGGGAGCAGG CGGGGCCGTGGTGTCCATTCTCGACAAGTCTAAAACAAGTCTGCGGTTTG GTCAAAAGCTACAAAATGTCCCTACGGCGTGTGTTGCGATCGCTGATGGC GTTCGTTCTCGCCCGGTCTCTGTGCCCTCTCGATACTCTCACGGCAGTTC TACTTCGTGCCGGCCGATGTGGCCACCGAGGAAGACTGCACCAGACTAGC TTCGGAGGCAGATCGCCTCATGGGTTGCATCGATGGCCTGGTAAGCACTA ACCACAAAGCTCTCCAGCGTCTTTCACGGCTCCGTCATTGCTTGAGATCT CAGCCTCGCTTTCGTTTCGAGCCACATGTAGCACGGGAGCACGTCATTGC CCAGTGCGCTTGCCGGGTCCAGCATAGTCGACGCGGGACGAGTGCCTTTT TCAAACGACGAAAGGTTACATACATAGCTGGCTGACTTCGCTACTCTCCG GCAGCGAGAGTCAGACAAGGGCATTTTTTTTCTCCATCGTGCAGGCCGTC CACGCGCCGCAAGCGGTTTGCTTTTGGGTGTCCACATTCCACGCCGCGTT TACGCTGCATGCGTTCGCTGCGATCGGAGGGCCAACCGGGCGCAATGCGT GTAACCGCCCCCATGTAAAAACGGACCTTTTCCAGGTGAACTGCGCCGCT TGGACGGCGAGAGCAACGCTTGACACCACGACGGTCGACGTGTGGGATCG CATGATGAACACCAACGTGCGAGGCCCGTTTCTTCTGGTGCAGGTAAGGT GCTCACTCACCGGCGATGTGTACTCACGGCACCAAGCACGTTCCCTGGGC AGCATTTAGGCCAGGCCGCATGGGCTGGGCGCTCAACCCAGACCGCTTCC ACAACACACAAGCACGACTGGGAAAAATTCCATCAGTGCGTGAACCTATT CGAAATTTTGACAGATGCGGTAGACCGTCGTACCCTCTGAGAAGGCGCCG GTCCAGGATAACTCCCCCCCTCCCCCCCCCCCCCCCCCCCATCAAAACCA AGACAACCCCCACAAAACAACTCTAAGAATGCCCCGGGCTGACCGGTTTA CTCTGTTTTCCATACTGGCCTCTCTATGTCCGAAGTCACACCGGGTCCTA TTTCTTGTCTGATTTTGCGGTCGTCACTCGGCGCGTTCAACAGAAAAACC CGCGGCGGACGGCGCAAACTACCCCCTCCCTAAGCTTTGTTACTGCTTTG CTCTAGACGTTGTTCAAGCCCGGCGCCATGGATTCTAGCGGGAGAGGTGC GTCGCTAAAGTGTGCGCGAGCAAGCACCAATACCAGTGACAGCGCGCCGA GGGAACTTTCGCATCGCGTACCCCCCGGAAAGAAACTCATTTTCGGCCCT CTGTCTTGGAGAACGCCCCCGGGGTATATGTTCCCCCCAAAAACGTTTCA GACGCCCCCCGGGGCATTCTCAGAGGTTATTTCGGTGGTCCGTTGCCTTT TGGGGCGACTCTTGTATTGGTTCCGTCCGATAGGTGTTTGCGTGCTTGGG GATCAGCAGTTAGCTGGCCTGAGAGATTAATTGCCTGTGCTATGAATATA TATATGTTTCACAGGCGGTGTCGAAGTCCATGAGGAGCAAAGGTCGACCT GGATCAATCGTCAACATTTCCAGTGGTAAGGATGCCGAGGAAATCGACTA AATTAGTTCGAGGCAGTCTTCGTACTGAAATGCTGTACCAGATACTCCGT AATTGTCAAATTGTTCAACAGCAGTGATCGCCATTCGGAAATGTTTGAGT TCTGTCGCACAACAACGCGCACCTTGCTTCGCAGTAGAACGCGGGTTACT GACGTGCCTACTTTTGCGACAGGGTTGCCTGTATCTCCCTGCTCAGAGAG CTGTGGCACGTGCTTTCGTCGGCAGCTCTCTTTTCTTCCTAGGCAAGAAG AGCCTGGCAGGGTTACGCTTCACCTTACAGCTGTGCTAGCCTTGGTCCTC TCCTCTGTACAGCGGCTGATGATGTTGCGTCTGGACCCCAACACGATGGT GGCACGTTGGTTGGTTGTCCCAGCGCTCAATTACAGCAGTTCGTGTCCTG CTGTATTGTTTCGTGCAGTCGCTGCCCACGGTGGTATCCCAAAAGTCAGC ACCTACTCCGTTTCCAAGGCGGCGCTCAATGCTTGCACCAAGATGCACGC CTACGAGCTTAAGGCGGCCCGCATCAGGTGCGCCGGAACCTGTCCCCGAA GAATCACTCAATCAACTCGTCTACCGGACAAGCCCAGGCCCCCCGAGAAC ATGCTGATTGCGGTTTCCTTGCCACGGGAATGCGGCAAATCAGTACCATA GTGGTTTTTGTCTCTCCGACCATGTGGAGAATTCCATGACATATTTGCAT ACAATGGAAAAGTGGCGTAGAACGGAAGTCAACGAACGACACGTCGGTCG GTACACTTTTATTCTGTGTTGCTTTGTTTGTTCTGGGGGGGGGGGAAGCT GCATACATATCCGCGCTTGGGGCTGATCTCCCCGTCCCGATCGCGTATGA TGGCGTGTCTACAAGCAGGGTCAACGCCATCAACGTCGGCTGGACGCTGA CAGACAACGAGCACAAGCTGCAACGGGTCGAGATGGGAAGCGATGACTGG ATCGAGGAGGCTGACAAGGTAAGGCGGTAAATCGGCGCGTGATCAGTGGC ACCATAAAACTTGTTTTCGGTCCATGGGTCTGGATGCGTTTGTCATGACG CGCACAGCTAGCATCGAGGCGTAAAACGACAGAAAGCATTCGCTTCCGCG ACCAGCGCATGCGCATCACACAGTTGTGACCAAAGCTAAACTTCCTTGTA TTCCGATCAGTAACATGGGTGTTTAGGCTCCGGGAATCGTGATAAATATG CACCCGTATGGACTTTTATACGTTCCTACTTTGGTACAAACAACATGGCG AATTATTCCCTCAAGGAATTATATTACGGTGCGCACATCAGATCCCGTGC TCAAGCTTCAAGCGTCGTATCGCCAAACCTTTTGGGGTTATAGTCTTGGA GAGGCCGAAGCGTTAATATGCGTTATCGACGGTCGTTTTGGATGCTTCTT TTATTTTATGTAGTCCCGAGATCCCACCCCTGTGCCCGCGACGCCAGCGA CAAAAGCAGTATCGTCCTATTTCAAGTGCAGCTTACACGAGGAGGTACTA CTGTAACTTATTTTGTTTTCCTGCCGATGTACGGCCTCCTTTTTTGCACC GGTTTGTTTTTGCGCCGGTGATCCGCGGTCGACGCACGTACGCTGTGTTA CCCCCACACCACCGTCGCTTCTTTTTCACCACCCCTTGGCCGAAACCGCC GGATGACTCGCACTACCGTCTGGACAACCACCAAAAGGAACACGCGATGG GCCGTTTGCTTCGCCCGGTGGACATCGCCGCTACCGTGGGTCACCTCCTG TCCGACGCAAGCGCCATGATGACTGGCACCATCGTCGACCTGCACCCCGA GATGGCGAGTGGCTCAGTACTACAAGACGCGCCACCACTTAAGAACTTGG TAGTTAAGAAATCCAGGCTAAAAAACACATCAAAGAACTTGTCCACATTT GACATGCCCGAATGAGAACCTCTACACAACACCTACATAAGAAGGGCAAT ATTTAGAGCATTAGTTTCCCCAGAGAAAAAATAAAGAACCTGAGCCTCGC TCAAAATAGGAGGTTGGGACGGTGAGGGGATCCACCGGCAGGACTTTGGA TCCAGGGGCTCAGTGACGAGCACGATTTGATCGATATTTTGAATGCACAT TTCTTTTTGGGTATGCTGAAACTGACCAGAAGTACGACTTTCCGGCTTGG CCCTTGGCATCCCGCTGCGGTATGAAGTGAGACACTCCAACGCCACAGTT TGCAGTTCTCTACAGAAAAATGCTCCGCTGCTAAATTTGTAGCTATCTTG GAGGCGGAAGTTTGCTCTCTAAAGGTCCAAAAATCACTGTTTTGAAAAGA CTGTCGCCGACATCTCCAACTGGCAGCTTGGTGTTCAGAACATCAGATAG CTCGCCCCTCACAGGGCAAGAACAGCAGAAGATGCTGGGAGGGCCGACTG ATATGGTGTATAGGGGCCGCCGCATGTCCTGGGCGGCAGCAGCAGAAAAC TATACGCCACGCTTTCGATGTTGCGGTGCGCACGAAGGACGAAGGATGTT TCTAACCGCTCTTTTCCCGGTTAATCAGGCGAATATTAGGGTCCACGCCC CGGGGCCTCACGCCTTAATTTTTGCCTCGATCAAGAAACGGACTCGAAGC GAATGTAGCCCGGCTGTTTTGAAAGAGTGTGGAATAGAGGAAGGGATGCA CAGCAAAATTGTGCATACTACACGTTCACACGTGCAAGGGGTGGGTTAAA AGACGCTCCGCTATAAACACGGCAAAGAAGAGCCGACAATCTCGGAGCAC CTCTGATATTTCGCAGAACTTTCAGAACATGCGGACATTTTTGGAAAGCC CGCACAAACTTCAAGAGAGCCTCTGTGATGTTCAGCGAGGCTATGCGATT ATTTTTCGAGAAATACCTATGTATAGTGATCAGTGGGTACCCCTCACTGC CGCCTTGAGTGGTGGCGCGTTCTGTACCAACCACAGCCGTAAACCTGGGC GTCTGGCGAGATGATGCATTTCCCATGATATTGAAAGAAAAACAGTCAAG AATAGAACCTAGCCCACGTTGATGATATCGTTTTCTTCTTATATAAATAC GGCCTGCAGAAGAGTGTGCGAGGCCCTTGTACAATGCTCCGCTCTTCGCT CCACTTTGTAGTTTACTTTGCCGTAGGCTCTCTGTCCAGGGGCTCGGCGG CGCGTTGTCAGTGACAACACACCCGTACGCGCGGTGCGAGACAGCAGCAA TGCTTGCGAGGGAACTTTACAAAAAATAATGGTTCGTGTCTTCACCCTTT TTGTTGGCGATTATAGCGCTCGAGCACAACAAGACACGCCTACACTTGTT GTCATATTGCAACGCATATACTCTTCTCGGGAGCACCATGATTCGTTCAA ACCAGGGGCTGGTTCTGGTATCCAACAAGGAGGCAAGACGTGATGAGGCC GAAACGGCGTTGAATCTCTAAGCTTGCCGGGCGAGCTTGTCGCAGAGTAT GGCTGAGAAATCCACGAGTTTCGAAGGATACTCTTGTACGCGCTTCAAAG TTCACATGAAGGTTCACTACTCTACCTCCTCGAGTTCTAATTAACACCGT TTCCGACACACCTGCCGACGTTCGTGCGGTTTGTCACTCGCGCTACTACT GTTCCACTGTACGGTTTCGTGGCGAACATGACAGGTGAATAATTGCTGGG GCTGAGCCGAGGGACTGCACGTGTCTGGATTGGTGAGTGCTGCAGCCCCC TCTCCCTTCAGCAGCCGCTGGGCATGGCTGCCTTGATGGAGCGCCCTTGG CTTCTCAACTCGGTGTTTTTCGGAACGAAGTCCACCGCTTTATAAATGGA TGCAGTTTTTTCGTGTGGCGAGAGATCGGGGCGAAGCGCACGATAATTGG GCTGGAAAAAACGAAAATCACCGCGGCGGTCGATGCAGTTAGTTTCACTT GGTATGCTGGTTGAACGTGCCGACCGTCTGCGTCAACGACACCTCCAAGA CCAAGCCAGCTCTGATAGAACCAAGTTCGAGCGAAGATGATTGGATAAAT TAGGTGCAGAACGCGGCGGGGTAGATCTTCGTAGAGCTTTGATTCGGCGC TCAGGTCTACTTGAGTTCGAATCTCGGCGGAAGCGACTTTTTCGTGCGAA GTGAGTGTTTTTCTCTCGCTTCCGCCCCTGTCAGTGGATAGCGCTTAGCG TCTGTACACAAACTTCGACCTCGCCGTCGACGAGGGAAAGGGACGGCTGA ACCCTTCTCGCGACCAAAAATTTAGGCAAGCACCGCAGACGGGGGGAGTG GGGACCTTGGGGAAAGGAACCCTTCTGTGTGACCACGGTTCAGTACTCTT GCAAGATGTCCTCGTGACAGGGAGCCCATCGAGCACTGGAAATAAATGTG AAGAAGAAACAATAATAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig807:454..7024+

>mRNA_L-elsbetiae_contig807.17060.1 ID=mRNA_L-elsbetiae_contig807.17060.1|Name=mRNA_L-elsbetiae_contig807.17060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1476bp|location=Sequence derived from alignment at L-elsbetiae_contig807:454..7024+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCTTATCATTGCAGCCTGATGGGCCTTATCATTGCAGCCTGCATC
GCTAAGGCTGGCGCGACCGCGGTGACGATCAGTGCACGAAACCAGGACAC
CGGCGAAAAAGCTGTCGCCCGACTTGTCGAACATACACCGTCCTGTCAGC
ATCGCTAAGGCTGGCGCGACCGCGGTGACGATCAGTGCACGAAACCAGGA
CACCGGCGAAAAAGCTGTCGCCCGACTTGTCGAACATACACCGTCCTGTC
AGTTCTACTTCGTGCCGGCCGATGTGGCCACCGAGGAAGACTGCACCAGA
CTAGCTTCGGAGGCAGATCGCCTCATGGGTTGCATCGATGGCCTGTTCTA
CTTCGTGCCGGCCGATGTGGCCACCGAGGAAGACTGCACCAGACTAGCTT
CGGAGGCAGATCGCCTCATGGGTTGCATCGATGGCCTGGTGAACTGCGCC
GCTTGGACGGCGAGAGCAACGCTTGACACCACGACGGTCGACGTGTGGGA
TCGCATGATGAACACCAACGTGCGAGGCCCGTTTCTTCTGGTGCAGGTGA
ACTGCGCCGCTTGGACGGCGAGAGCAACGCTTGACACCACGACGGTCGAC
GTGTGGGATCGCATGATGAACACCAACGTGCGAGGCCCGTTTCTTCTGGT
GCAGGCGGTGTCGAAGTCCATGAGGAGCAAAGGTCGACCTGGATCAATCG
TCAACATTTCCAGTGGCGGTGTCGAAGTCCATGAGGAGCAAAGGTCGACC
TGGATCAATCGTCAACATTTCCAGTGTCGCTGCCCACGGTGGTATCCCAA
AAGTCAGCACCTACTCCGTTTCCAAGGCGGCGCTCAATGCTTGCACCAAG
ATGCACGCCTACGAGCTTAAGGCGGCCCGCATCAGTCGCTGCCCACGGTG
GTATCCCAAAAGTCAGCACCTACTCCGTTTCCAAGGCGGCGCTCAATGCT
TGCACCAAGATGCACGCCTACGAGCTTAAGGCGGCCCGCATCAGCAGGGT
CAACGCCATCAACGTCGGCTGGACGCTGACAGACAACGAGCACAAGCTGC
AACGGGTCGAGATGGGAAGCGATGACTGGATCGAGGAGGCTGACAAGCAG
GGTCAACGCCATCAACGTCGGCTGGACGCTGACAGACAACGAGCACAAGC
TGCAACGGGTCGAGATGGGAAGCGATGACTGGATCGAGGAGGCTGACAAG
GAACACGCGATGGGCCGTTTGCTTCGCCCGGTGGACATCGCCGCTACCGT
GGGTCACCTCCTGTCCGACGCAAGCGCCATGATGACTGGCACCATCGTCG
ACCTGCACCCCGAGATGGAACACGCGATGGGCCGTTTGCTTCGCCCGGTG
GACATCGCCGCTACCGTGGGTCACCTCCTGTCCGACGCAAGCGCCATGAT
GACTGGCACCATCGTCGACCTGCACCCCGAGATGGTGAATAATTGCTGGG
GCTGAGTGAATAATTGCTGGGGCTGA
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