mRNA_L-elsbetiae_contig806.17052.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig806.17052.1
Unique NamemRNA_L-elsbetiae_contig806.17052.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 6.070e-16
Identity = 61/132 (46.21%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:  493 AEYGRKSAVAPT---VQRSRPGSPESRRWWTVC*DGVR--TKENAINRECETPADIVGFMIEEQDSLAEDVERVRKLLSNAPADRAWRPRGSLVLCRAYYPGGRVHQGHRSSEIHPLPMPA*RRRLAAIQSR 873
            A  G+K+A A T   +  ++ GSP +     +    +R    E A++    T AD+V    EE DSLAEDV+RVRKLL+ APADRAWR RG L+L RA+YPGGRV  GHR+S+  P    A R R +   SR
Sbjct:  613 ASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLL---LRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQA-PAAGVAKRTRSSEEPSR 740
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: A0A6H5L7B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.730e-9
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 2 
Query:   47 GKTEMVSMLLATGAAVDTPAADEHTPLVRAASEDHSVATRPLLDAGADVALR-GGYGRSALDCAAQGGHVDLLREVIEHRVNLNSTSDKGTTALHLAAFFNHAAAIDALVEAGANIKAK 400
            G   + ++LL   AAV++   ++ TPL  AA +D     + L+ A AD+ LR G    S +DCAA  G+VD++  + +H V +N  +  G T LH+AA      AIDALVEA AN+ A+
Sbjct:  101 GHDAINALLLLQKAAVNSLDGEDRTPLHLAAGKDSLAGVKALVSAHADLRLRFGDADESPMDCAACFGYVDMMLTLTQHGVGVNDAAATGMTPLHIAAGQAQLPAIDALVEAEANVGAE 219
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.390e-8
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  604 ENAINRECETPADIVGFMIEEQDSLAEDVERVRKLLSNAPADRAWRPRGSLVLCRA 771
            E   N +     D++G  +EE+D L EDVERVR+LL+NAPADRAWR RG L++CRA
Sbjct:  273 ETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRA 328
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.170e-6
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  637 ADIVGFMIEEQDSLAEDVERVRKLLSNAPADRAWRPRGSLVLCRA 771
            AD +G  + E+D + E+ E VRKLL+NAPADRAWR R SLVLCRA
Sbjct:  303 ADAIGMKVPEEDRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRA 347
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.840e-6
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  604 ENAINRECETPADIVGFMIEEQDSLA--EDVERVRKLLSNAPADRAWRPRGSLVLCRAYY 777
            E A+N +  T A++VG  IE        +D+ERVR LL NAPADRAWR RG LVLCRA++
Sbjct:  284 ETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFW 343
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.510e-6
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  604 ENAINRECETPADIVGFMIEEQDSLA--EDVERVRKLLSNAPADRAWRPRGSLVLCRAYY 777
            E A+N +  T A++VG  IE        +DVERVR LL NAP DRAWR RG LVLCRA++
Sbjct:  235 ETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFW 294
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: A0A075JY18_9BACI (Ankyrin n=1 Tax=Virgibacillus sp. SK37 TaxID=403957 RepID=A0A075JY18_9BACI)

HSP 1 Score: 54.3 bits (129), Expect = 4.680e-5
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:   50 KTEMVSMLLATGAAVDTPAADEHTPLVRAASEDHSVATRPLLDAGADVALRGGYGRSALDCAAQGGHVDLLREVIEH-RVNLNSTSDKGTTAL 325
            K E V +L+  G  +D     ++ P + A +E +    +  ++AGAD  L   YG +AL  AA+ GH+D+++E++E+  V++N  +D G TAL
Sbjct:    8 KPEAVKLLIEKGINIDLRDNMQNNPFLYAGAEGYLEILKLTIEAGADPILLNRYGGTALIPAAEHGHIDVIKELVENTEVDVNHINDLGWTAL 100
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BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.280e-5
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  604 ENAINRECETPADIVGFMIEEQDSL-AEDVERVRKLLSNAPADRAWRPRGSLVLCRAYYPGGRVHQ 798
            E   +R  + PAD VG  +E  D L   +V  V +LL+NAPADRAWR RG LVLCRA+    R+ Q
Sbjct:  291 ETTPDRNGQQPADRVGHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQ 356
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig806.17052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JHY9_9PHAE6.070e-1646.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7B7_9PHAE2.730e-939.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXK5_9PHAE1.390e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI2.170e-664.44Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
A0A6H5KNU3_9PHAE2.840e-655.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI3.510e-655.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A075JY18_9BACI4.680e-534.41Ankyrin n=1 Tax=Virgibacillus sp. SK37 TaxID=40395... [more]
D7FYD0_ECTSI7.280e-550.00Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig806contigL-elsbetiae_contig806:19749..21389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7FHH2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1641
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig806.17052.1prot_L-elsbetiae_contig806.17052.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig806 19807..20406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.1763775-UTR-L-elsbetiae_contig806:19748..198061622816891.1763775-UTR-L-elsbetiae_contig806:19748..19806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 19749..19806 +
1691683891.037767-UTR-L-elsbetiae_contig806:19748..198061691683891.037767-UTR-L-elsbetiae_contig806:19748..19806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 19749..19806 +
1622816891.1985693-UTR-L-elsbetiae_contig806:20406..213891622816891.1985693-UTR-L-elsbetiae_contig806:20406..21389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 20407..21389 +
1691683891.0666823-UTR-L-elsbetiae_contig806:20406..213891691683891.0666823-UTR-L-elsbetiae_contig806:20406..21389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 20407..21389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816891.1874254-CDS-L-elsbetiae_contig806:19806..204061622816891.1874254-CDS-L-elsbetiae_contig806:19806..20406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig806 19807..20406 +
1691683891.0529296-CDS-L-elsbetiae_contig806:19806..204061691683891.0529296-CDS-L-elsbetiae_contig806:19806..20406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig806 19807..20406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig806.17052.1

>prot_L-elsbetiae_contig806.17052.1 ID=prot_L-elsbetiae_contig806.17052.1|Name=mRNA_L-elsbetiae_contig806.17052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
MVSMLLATGAAVDTPAADEHTPLVRAASEDHSVATRPLLDAGADVALRGG
YGRSALDCAAQGGHVDLLREVIEHRVNLNSTSDKGTTALHLAAFFNHAAA
IDALVEAGANIKAKDNGSTPLHVAATNRSPAAVLALLKHGASINQQNTAG
NPPLHRLCSDPGQEARNRAGGGPSAEMGCGRKKMPSTENAKHRQISSGL*
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mRNA from alignment at L-elsbetiae_contig806:19749..21389+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig806.17052.1 ID=mRNA_L-elsbetiae_contig806.17052.1|Name=mRNA_L-elsbetiae_contig806.17052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1641bp|location=Sequence derived from alignment at L-elsbetiae_contig806:19749..21389+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGCGCAGAGGTCGGCACCCCTCCCCACCATGCTTCAGTTGCTGGGGAA
AAACGGAGATGGTGTCGATGTTGTTGGCCACGGGGGCTGCTGTTGATACA
CCGGCCGCCGATGAGCACACTCCGCTTGTGCGTGCAGCGTCCGAGGATCA
CTCAGTTGCAACACGACCCCTGTTGGATGCCGGAGCGGATGTAGCCCTTC
GAGGTGGGTATGGCCGGTCGGCCCTCGATTGTGCTGCACAAGGTGGGCAT
GTGGATCTTCTGAGGGAGGTCATTGAGCACAGGGTCAACTTGAATTCAAC
AAGCGACAAAGGTACCACAGCCCTACACCTCGCCGCGTTCTTTAACCACG
CCGCTGCGATCGATGCGCTTGTCGAGGCTGGTGCCAATATCAAGGCGAAG
GATAACGGCAGTACCCCCCTCCATGTCGCTGCCACAAACCGCAGTCCCGC
AGCCGTACTCGCCCTGTTGAAGCATGGTGCGAGTATCAACCAGCAGAATA
CGGCAGGAAATCCGCCGTTGCACCGACTGTGCAGCGATCCAGGCCAGGAA
GCCCGGAATCGCGCAGGTGGTGGACCGTCTGCTGAGATGGGGTGCGGACG
AAAGAAAATGCCATCAACAGAGAATGCGAAACACCGGCAGATATCGTCGG
GTTTATGATCGAGGAACAAGACAGCCTGGCCGAGGATGTTGAACGCGTGC
GCAAGCTGCTGTCGAACGCTCCGGCGGACAGGGCGTGGCGTCCGCGGGGC
TCTCTGGTCTTGTGCCGTGCTTACTACCCTGGCGGAAGGGTGCACCAGGG
GCACAGGAGCAGCGAAATACACCCATTGCCCATGCCAGCATAGCGAAGAC
GACTCGCAGCCATCCAGAGCCGTCAAGGACAGAGGTCGAGTGGGCTGGCG
TGGCGAGCATGCTGATGGGGGCGGGAGCTAATCCCATCTCGTTCATGGGG
GATGGGGCAGATATCATCTTCAGGATGATTGTCGGGTACCTTTGACGTGA
AAAACGCTGCGGGTTTTGCACCTACACAGTCAGTGCGCGGTATGCGAATG
GTCGCTGTCTGCCTCGCATCTACCCGTTTTGTTTTTTTCCGCGCACATGC
TTCCATACTTCATGCTTCAATTTGTTGCGCATTCGGCATGTCCTGGCCGC
TGCAGCATTGTTCAGCAGCAAGCCGTGAGCCCCATGTACGATAAGGGGTT
TTGAGCGGTGGAAGAGACCGTTGTGTCCTGTTGTTGGTATCCCTCTTTCG
TGTCAAGTTTTTCTAGAAACTCTGTTGCGCCACACTATCGGCATGTGTGC
AAACGTTAGGTACCACATGAAGCTATTTTTGCGGGTTGCACATGGTACAT
TTCTACTATTATTGTCGTTGTTTTTGGGAATACATACAGCTTAACTTATT
TATGTTGTGTACGATTTGCCAACGGCGGGGGCTCAGAGGAGAACATGGGC
CTGTTGTGAACCGGACGCTTGCAAGGGTGCTGCCCGTGTTACGTTCCTGG
CGATGGTTCACTTGACATTCAGATACAGTGGCAACATCAAGGCGACACGT
GTAAAACCGGAGCTATTTTAGGCGTCGTGCATGAGGAAAAACCCCGTGGA
GCTGCAGTGTTTGTCTTGTCGGGTTTGAACGCGATGTGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig806:19749..21389+

>mRNA_L-elsbetiae_contig806.17052.1 ID=mRNA_L-elsbetiae_contig806.17052.1|Name=mRNA_L-elsbetiae_contig806.17052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig806:19749..21389+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTCGATGTTGTTGGCCACGGGGGCTGCTGTTGATACACCGGCCGC
CGATGAGCACACTCCGCTTGTGCGTGCAGCGTCCGAGGATCACTCAGTTG
CAACACGACCCCTGTTGGATGCCGGAGCGGATGTAGCCCTTCGAGGTGGG
TATGGCCGGTCGGCCCTCGATTGTGCTGCACAAGGTGGGCATGTGGATCT
TCTGAGGGAGGTCATTGAGCACAGGGTCAACTTGAATTCAACAAGCGACA
AAGGTACCACAGCCCTACACCTCGCCGCGTTCTTTAACCACGCCGCTGCG
ATCGATGCGCTTGTCGAGGCTGGTGCCAATATCAAGGCGAAGGATAACGG
CAGTACCCCCCTCCATGTCGCTGCCACAAACCGCAGTCCCGCAGCCGTAC
TCGCCCTGTTGAAGCATGGTGCGAGTATCAACCAGCAGAATACGGCAGGA
AATCCGCCGTTGCACCGACTGTGCAGCGATCCAGGCCAGGAAGCCCGGAA
TCGCGCAGGTGGTGGACCGTCTGCTGAGATGGGGTGCGGACGAAAGAAAA
TGCCATCAACAGAGAATGCGAAACACCGGCAGATATCGTCGGGTTTATGA
ATGGTGTCGATGTTGTTGGCCACGGGGGCTGCTGTTGATACACCGGCCGC
CGATGAGCACACTCCGCTTGTGCGTGCAGCGTCCGAGGATCACTCAGTTG
CAACACGACCCCTGTTGGATGCCGGAGCGGATGTAGCCCTTCGAGGTGGG
TATGGCCGGTCGGCCCTCGATTGTGCTGCACAAGGTGGGCATGTGGATCT
TCTGAGGGAGGTCATTGAGCACAGGGTCAACTTGAATTCAACAAGCGACA
AAGGTACCACAGCCCTACACCTCGCCGCGTTCTTTAACCACGCCGCTGCG
ATCGATGCGCTTGTCGAGGCTGGTGCCAATATCAAGGCGAAGGATAACGG
CAGTACCCCCCTCCATGTCGCTGCCACAAACCGCAGTCCCGCAGCCGTAC
TCGCCCTGTTGAAGCATGGTGCGAGTATCAACCAGCAGAATACGGCAGGA
AATCCGCCGTTGCACCGACTGTGCAGCGATCCAGGCCAGGAAGCCCGGAA
TCGCGCAGGTGGTGGACCGTCTGCTGAGATGGGGTGCGGACGAAAGAAAA
TGCCATCAACAGAGAATGCGAAACACCGGCAGATATCGTCGGGTTTATGA
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