mRNA_L-elsbetiae_contig806.17050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig806.17050.1
Unique NamemRNA_L-elsbetiae_contig806.17050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig806.17050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig806contigL-elsbetiae_contig806:7001..7574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig806.17050.1prot_L-elsbetiae_contig806.17050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig806 7014..7406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.8328066-UTR-L-elsbetiae_contig806:7000..70131622816890.8328066-UTR-L-elsbetiae_contig806:7000..7013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 7001..7013 +
1691683890.7490082-UTR-L-elsbetiae_contig806:7000..70131691683890.7490082-UTR-L-elsbetiae_contig806:7000..7013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 7001..7013 +
1622816890.8590052-UTR-L-elsbetiae_contig806:7406..75741622816890.8590052-UTR-L-elsbetiae_contig806:7406..7574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 7407..7574 +
1691683890.7755072-UTR-L-elsbetiae_contig806:7406..75741691683890.7755072-UTR-L-elsbetiae_contig806:7406..7574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig806 7407..7574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.845956-CDS-L-elsbetiae_contig806:7013..74061622816890.845956-CDS-L-elsbetiae_contig806:7013..7406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig806 7014..7406 +
1691683890.7590613-CDS-L-elsbetiae_contig806:7013..74061691683890.7590613-CDS-L-elsbetiae_contig806:7013..7406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig806 7014..7406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig806.17050.1

>prot_L-elsbetiae_contig806.17050.1 ID=prot_L-elsbetiae_contig806.17050.1|Name=mRNA_L-elsbetiae_contig806.17050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MEHKKWGHLSRRRHDASTAGSRLVHGRGTDTYQIQFIMSLGRHRFTLSEC
VAVFSVSDPPGLGATRHRLVETKGNSCCTSSSLQVRPLRAYVVLQLEQGG
GYVGDPTVTRKMAPGAHEMMLQWLAAACQG*
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mRNA from alignment at L-elsbetiae_contig806:7001..7574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig806.17050.1 ID=mRNA_L-elsbetiae_contig806.17050.1|Name=mRNA_L-elsbetiae_contig806.17050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=574bp|location=Sequence derived from alignment at L-elsbetiae_contig806:7001..7574+ (Laminarionema elsbetiae ELsaHSoW15)
GTACCAACATCCGATGGAACATAAAAAGTGGGGCCATCTGTCTCGGCGAA
GGCACGATGCATCCACTGCTGGGTCGCGCCTGGTCCATGGCCGCGGAACG
GATACTTATCAGATTCAATTCATCATGTCGTTGGGCCGGCACCGTTTTAC
GCTGTCCGAGTGCGTTGCTGTGTTTTCTGTGTCTGATCCCCCAGGGCTGG
GTGCCACTCGGCACCGCTTGGTCGAGACAAAGGGTAACTCCTGCTGTACT
TCAAGTAGTTTGCAAGTGCGCCCACTTCGTGCTTATGTGGTGCTGCAGTT
GGAACAAGGCGGTGGGTATGTAGGTGATCCAACGGTGACGCGAAAGATGG
CGCCTGGCGCTCATGAAATGATGCTCCAGTGGCTCGCCGCCGCGTGTCAA
GGCTAAATCTTTCGAACCCCCTCTCCCCCCCGCGCATCGCTTGCGCTCGA
CACCCACCCGTGCTTACCTTCCCTTCCCGGAACTCCACCAAGCACCCCCG
TCACCGCGCGGCTGGCCCCTGCCGCCACCGAGGACGCGCTGGGCCTCCTC
CTGGACGACGGCAAGGCGAACGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig806:7001..7574+

>mRNA_L-elsbetiae_contig806.17050.1 ID=mRNA_L-elsbetiae_contig806.17050.1|Name=mRNA_L-elsbetiae_contig806.17050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig806:7001..7574+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACATAAAAAGTGGGGCCATCTGTCTCGGCGAAGGCACGATGCATC
CACTGCTGGGTCGCGCCTGGTCCATGGCCGCGGAACGGATACTTATCAGA
TTCAATTCATCATGTCGTTGGGCCGGCACCGTTTTACGCTGTCCGAGTGC
GTTGCTGTGTTTTCTGTGTCTGATCCCCCAGGGCTGGGTGCCACTCGGCA
CCGCTTGGTCGAGACAAAGGGTAACTCCTGCTGTACTTCAAGTAGTTTGC
AAGTGCGCCCACTTCGTGCTTATGTGGTGCTGCAGTTGGAACAAGGCGGT
GGGTATGTAGGTGATCCAACGGTGACGCGAAAGATGGCGCCTGGCGCTCA
TGAAATGATGCTCCAGTGGCTCGCCGCCGCGTGTCAAGGCTAAATGGAAC
ATAAAAAGTGGGGCCATCTGTCTCGGCGAAGGCACGATGCATCCACTGCT
GGGTCGCGCCTGGTCCATGGCCGCGGAACGGATACTTATCAGATTCAATT
CATCATGTCGTTGGGCCGGCACCGTTTTACGCTGTCCGAGTGCGTTGCTG
TGTTTTCTGTGTCTGATCCCCCAGGGCTGGGTGCCACTCGGCACCGCTTG
GTCGAGACAAAGGGTAACTCCTGCTGTACTTCAAGTAGTTTGCAAGTGCG
CCCACTTCGTGCTTATGTGGTGCTGCAGTTGGAACAAGGCGGTGGGTATG
TAGGTGATCCAACGGTGACGCGAAAGATGGCGCCTGGCGCTCATGAAATG
ATGCTCCAGTGGCTCGCCGCCGCGTGTCAAGGCTAA
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