mRNA_L-elsbetiae_contig8059.17048.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8059.17048.1 vs. uniprot
Match: A0A6H5K203_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K203_9PHAE) HSP 1 Score: 362 bits (928), Expect = 5.040e-108 Identity = 351/785 (44.71%), Postives = 415/785 (52.87%), Query Frame = 2 Query: 359 LLQAMREEQLDSLKRIADGVQQLQSQVMVLGESASASEGNTSMVLSRLAALEVRIGSAPAPLDPRDKTPAYQVQPQTQQD------ARAGGRVGRGVAGTGGIARIPAFAATAQAGSSPPVAGKVPLPPAAAFSEPGRAPTWQGRADPEPARTHFMRTASPHVCRLESSAGPPPATNKP-FQPAGPTQAAARAVAGGVEGARRGEGDAEFSKEAARKEAKRLAFMEDRARIQARISATKGGGEAPAGA-KPAPTSANPPTEKLGVVQTQPLFDSLSVGPPAAGLSSPFATPGGGAGVFSSSASFLDDEGNQARTGA-----DDEGAAWLEREKEQREXXXXXXXXXXXXXXXXXXXAKRLKEEERARKVXXXXXXXXXXXXXXEAEAKKQAKTRVLMSSLFDKGDEDDGNSLFGGLGGAALPVFVDESNDYNDSG--SGTDQAAKHPVAPASSVSAVAPPPL---------SSGGGLFGSIEEPTAASRGG------KPGSPFLEQFSSPVGEVPPARK----GVGTGLETES--------------------------SGLFDSLPP----PSQASNNHSG----------------------SNTVAPSPNDGITDEMDDFLSTLETPDVIAPSGGGTSGTDATRGSIFGDDEFAGGGN--DDGIFSSLPTVV-----GPNRGSAGQGAA----ATQSGAGTSLFERTEFSIESEDDEGGNVFGGGVGXXXXXXXXGGDNYG---ASFMSAMEEANLSL-SGDDGKPGEEG--ADKEGMVDVT 2404 LLQAMREEQLDSLK IADGVQQLQSQVMVLGESA SEG S+ L RL +E+R+ S P+ + P P++QQ +R +G G+ G G A A A A SS P PA + GR PTWQGRA+PEPA HFMR ASP SA PAT P G A + G G +GEG ++ +EAA+KEAKRLAFMEDRARIQARI+A+KGG APA + KP PT+ + Q+ P + P +P A G G FS S SFLD G GA DDE AWLERE+EQR XXXXX XXX AK+ +E XXXXXXXXXXXXXX K+QAKTRVLMSSLFDK DEDD NSLFGGLGGAALPVF D+ N+ + + S +Q + P APASSVS PPL GG LF +EEP+ RGG G+P + SSPVG + AR+ GVG+GL + SGLFDS PP S +N +G SN + DG DEMDDF S LE V APS G + T ATRGS+F +D +G G+ DD IFSS T V G + S G A + AGTSLF+R EFSI++ D GGNVFGGG GG G ASF+SAM + +L + SGDDG GE G ADKEGM +V+ Sbjct: 59 LLQAMREEQLDSLKSIADGVQQLQSQVMVLGESARHSEGKMSLALDRLGRIEIRLDSTTVPMKSQMTVP-----PKSQQXXXXXXXSRTYANIGAGMGGRMG-ADGRAKAMKAPQPSSAFGKAAPPXXPAT-VEDAGRVPTWQGRAEPEPAWPHFMRNASPQQKSRAPSAKSAPATAAATVVPVGGAAAVSAVTPGEASGGGKGEGVSQ--EEAAKKEAKRLAFMEDRARIQARIAASKGGRAAPASSPKPTPTTTH---------QSAPAAQDIQAQKPEP-FETPSAASAGEGGSFSGSPSFLDSVGGDVGAGAGGGRADDEAEAWLEREREQRGKXXXXXREXXXRVERQLAEAKKFREXXXXXXXXXXXXXXXXXXXXXXXXXKRQAKTRVLMSSLFDKSDEDDSNSLFGGLGGAALPVFHDDDNNGSRAHDTSLAEQLEEKPEAPASSVSEADAPPLPPGFGSGIGGGGGSLFAGMEEPSTG-RGGIFEEVNMSGAPDGDPHSSPVGGLSSARQSSSNGVGSGLFPDEEPTPPESRLGAGDGGYVNVDVQPGGYSGLFDSSPPLEGSSSSLANKKAGANSPKATVTTLEGSATGITGASSNATVAATTDGAADEMDDFFSKLEAASVSAPSTGAAT-TTATRGSLFENDGISGAGDEGDDDIFSSSYTGVTGGXXGDSTQSRGNKGALFDPSDSQSAGTSLFDRMEFSIDAGDPAGGNVFGGG------GVSGGGRGIGDASASFLSAMGDVDLMMPSGDDGVEGEVGGEADKEGMTEVS 816
BLAST of mRNA_L-elsbetiae_contig8059.17048.1 vs. uniprot
Match: D8LIT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT5_ECTSI) HSP 1 Score: 342 bits (876), Expect = 1.120e-100 Identity = 361/829 (43.55%), Postives = 418/829 (50.42%), Query Frame = 2 Query: 341 DGMTKALLQAMREEQLDSLKRIADGVQQLQSQVMVLGESASASEGNTSMVLSRLAALEVRIGSAPAPLDPRDKTPAYQVQPQTQQDARAGGRVGRGVAG-TGGIARIPAFAATAQAGSSPPVAGKVPLPPAAAFSEPGRAPTWQGRADPEPARTHFMRTASPHVCRLESSAGPPPATNKP-FQPAGPTQAAARAVAGGVEGARRGEGDAEFSKEAARKEAKRLAFMEDRARIQ-------------------------------------ARISATKGGGEAPAG-AKPAPTSANPPTEKLGVVQTQP--LFDSLSVGPPAAGLSSPFATPGGGAGVFSSSASFLDDEGNQARTGA-----DDEGAAWLEREKEQREXXXXXXXXXXXXXXXXXXXAKRLKEEERARKVXXXXXXXXXXXXXXEAEAKKQAKTRVLMSSLFDKGDEDDGNSLFGGLGGAALPVFVDESNDYNDSGSG-TDQAAKHPVAPASSVSAVAPPPLSSG---------GGLFGSIEEPTAASRGG------KPGSPFLEQFSSPVGEVPPARKG----VGTGLETES--------------------------SGLFDSLPPPSQASNNHSGSNTVAPSPN--------------------------DGITDEMDDFLSTLETPDVIAPSGGGTSGTDATRGSIFGDDEFAGGGN--DDGIFSSLPTVVGPNRGSAGQGAAATQS--------------GAGTSLFERTEFSIESEDDEGGNVFGGGVGXXXXXXXXGGDNYG---ASFMSAMEEANLSL-SGDDGKPGEEG--ADKEGMVDVT 2404 D LLQAMREEQLDSLK IADGVQQ VMVLGESA SEG S+ L RL +EVR+ S AP+ + P Q Q Q +R +G G+ G G R A A + A P PP A + GR PTWQGR +PEPAR HFMR ASP S A PAT P G A + G G +GEG ++ +EAARKEAKRLAFMEDRARIQ ARI+A+KGG APA KP PT+ T ++ Q LF++ P A G G FS S SFLD G GA DDE AWLERE+EQR XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX AKTRVLMSSLFDKG+EDDGNSLFGGLGGAALPVF D+ N + +Q + PVAPASSVS PPLSSG G LF +EEP+ RGG G+P + SS VG + AR+G VG+GL + SGLFDS PP +S++ + N A SP DG DEMDDF STLE V APS G + T ATRGS+F +D +G G+ DD IFSS T V + G G +TQS AGTSLF+R EFS+++ED +GGNVFGGG GG G ASF+SAM E +L GDDG GE G ADKEGM +V+ Sbjct: 8 DHHQAVLLQAMREEQLDSLKSIADGVQQ----VMVLGESARNSEGKMSLALDRLGRIEVRLDSTTAPMKSQTIVPPKSQQ-QQQPHSRTHPNIGAGMGGGMGADGRAKAMKAPQPYSAFGKAA---PPPPPATVEDAGRVPTWQGRGEPEPARPHFMRNASPQQKPRASPAKTVPATAAATVVPVGGAAAVSAVTPGEASGGGKGEGVSQ--EEAARKEAKRLAFMEDRARIQYLYRVRRDMEPAREVGDQASGGSIPMLDFRPQRDGRKARIAASKGGRAAPASFPKPTPTTTRQSTPAAQDIKAQQPELFET------------PLAASAGEGGTFSGSPSFLDGVGGDVGAGAEGGRADDEAEAWLEREREQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKTRVLMSSLFDKGEEDDGNSLFGGLGGAALPVFHDDDNGSRARDTSLAEQPEEKPVAPASSVSEADAPPLSSGFGSGIGGGGGSLFAGMEEPSTG-RGGIFDEANTSGAPGGDPHSSTVGGLSSARQGSSNGVGSGLFPDEEPSPPESRVGAGDGGYGNVDVQPGGYSGLFDSSPPVEGSSSSMADKNAGANSPKATVTTLEGSATGITGASSNATIATTADGAADEMDDFFSTLEAASVSAPSTGAAT-TTATRGSLFENDGISGTGDGGDDDIFSSSYTGV-----TGGTGGDSTQSRGNEGELFDPSASQSAGTSLFDRMEFSMDAEDPDGGNVFGGG------GVSGGGRGIGDASASFLSAMGEVDLMTPGGDDGVEGEVGGEADKEGMTEVS 801 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8059.17048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8059.17048.1 >prot_L-elsbetiae_contig8059.17048.1 ID=prot_L-elsbetiae_contig8059.17048.1|Name=mRNA_L-elsbetiae_contig8059.17048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=688bp MTKALLQAMREEQLDSLKRIADGVQQLQSQVMVLGESASASEGNTSMVLSback to top mRNA from alignment at L-elsbetiae_contig8059:401..7261- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8059.17048.1 ID=mRNA_L-elsbetiae_contig8059.17048.1|Name=mRNA_L-elsbetiae_contig8059.17048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6861bp|location=Sequence derived from alignment at L-elsbetiae_contig8059:401..7261- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8059:401..7261- >mRNA_L-elsbetiae_contig8059.17048.1 ID=mRNA_L-elsbetiae_contig8059.17048.1|Name=mRNA_L-elsbetiae_contig8059.17048.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4128bp|location=Sequence derived from alignment at L-elsbetiae_contig8059:401..7261- (Laminarionema elsbetiae ELsaHSoW15)back to top |