mRNA_L-elsbetiae_contig8059.17047.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8059.17047.1
Unique NamemRNA_L-elsbetiae_contig8059.17047.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8059.17047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8059contigL-elsbetiae_contig8059:119..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size361
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8059.17047.1prot_L-elsbetiae_contig8059.17047.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8059 249..540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.6119964-UTR-L-elsbetiae_contig8059:118..2481622816890.6119964-UTR-L-elsbetiae_contig8059:118..248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8059 119..248 +
1691683890.5472162-UTR-L-elsbetiae_contig8059:118..2481691683890.5472162-UTR-L-elsbetiae_contig8059:118..248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8059 119..248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.6216795-CDS-L-elsbetiae_contig8059:248..2711622816890.6216795-CDS-L-elsbetiae_contig8059:248..271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8059 249..271 +
1691683890.5607486-CDS-L-elsbetiae_contig8059:248..2711691683890.5607486-CDS-L-elsbetiae_contig8059:248..271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8059 249..271 +
1622816890.6316192-CDS-L-elsbetiae_contig8059:323..4591622816890.6316192-CDS-L-elsbetiae_contig8059:323..459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8059 324..459 +
1691683890.572725-CDS-L-elsbetiae_contig8059:323..4591691683890.572725-CDS-L-elsbetiae_contig8059:323..459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8059 324..459 +
1622816890.6427817-CDS-L-elsbetiae_contig8059:468..5401622816890.6427817-CDS-L-elsbetiae_contig8059:468..540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8059 469..540 +
1691683890.5833108-CDS-L-elsbetiae_contig8059:468..5401691683890.5833108-CDS-L-elsbetiae_contig8059:468..540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8059 469..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8059.17047.1

>prot_L-elsbetiae_contig8059.17047.1 ID=prot_L-elsbetiae_contig8059.17047.1|Name=mRNA_L-elsbetiae_contig8059.17047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MYAYDVLNVSSRIPFLVPFGACLGLCDIPCLCNVGLFGLPSLFVQRKSVQ
YTKDGGWLYTIHIHRGTAKQTNHHAT*
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mRNA from alignment at L-elsbetiae_contig8059:119..540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8059.17047.1 ID=mRNA_L-elsbetiae_contig8059.17047.1|Name=mRNA_L-elsbetiae_contig8059.17047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=422bp|location=Sequence derived from alignment at L-elsbetiae_contig8059:119..540+ (Laminarionema elsbetiae ELsaHSoW15)
TACTTGGACGGATATTCGGTCTTGTGTTGCACGTGGCGAAGTTGATGCCA CCGGGGCTCATCGCGAGCCCTTCCGGTATTTCCCCTTCCCCAATTTTCCC TGACGTGTCGGGCAAGTTTGGACTGATTTTATGTATGCATATGATGTCTT GAAGCACTTGGTTGTTGTAAGCAGAGAGAGCAAGATTACTGTGTCTATCA ACTAGTGTGTCTAGTCGAATTCCCTTTTTGGTGCCATTTGGTGCCTGTCT TGGCCTGTGCGATATCCCTTGCCTTTGCAATGTTGGCTTGTTTGGCTTAC CAAGCCTCTTTGTTCAACGCAAGAGCGTGCAGTATACCAAAGCACGCCAG GATGGCGGGTGGCTGTACACCATCCACATCCACAGGGGCACAGCCAAACA AACGAACCACCATGCCACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8059:119..540+

>mRNA_L-elsbetiae_contig8059.17047.1 ID=mRNA_L-elsbetiae_contig8059.17047.1|Name=mRNA_L-elsbetiae_contig8059.17047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig8059:119..540+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCATATGATGTCTTGAAATGTATGCATATGATGTCTTGAATGTG
TCTAGTCGAATTCCCTTTTTGGTGCCATTTGGTGCCTGTCTTGGCCTGTG
CGATATCCCTTGCCTTTGCAATGTTGGCTTGTTTGGCTTACCAAGCCTCT
TTGTTCAACGCAAGAGCGTGCAGTATACCAAATGTGTCTAGTCGAATTCC
CTTTTTGGTGCCATTTGGTGCCTGTCTTGGCCTGTGCGATATCCCTTGCC
TTTGCAATGTTGGCTTGTTTGGCTTACCAAGCCTCTTTGTTCAACGCAAG
AGCGTGCAGTATACCAAAGATGGCGGGTGGCTGTACACCATCCACATCCA
CAGGGGCACAGCCAAACAAACGAACCACCATGCCACTTGAGATGGCGGGT
GGCTGTACACCATCCACATCCACAGGGGCACAGCCAAACAAACGAACCAC
CATGCCACTTGA
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