mRNA_L-elsbetiae_contig8057.17046.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8057.17046.1
Unique NamemRNA_L-elsbetiae_contig8057.17046.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: D8LR83_ECTSI (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR83_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 7.720e-14
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 SSLAASVGLGLGLAVTASVPGAASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            SS+AAS GLGL LAV+   P AA ASV FETERYGDKELKIATVNKLRQQIRNS+
Sbjct:   69 SSVAASFGLGLALAVS---PEAAQASVNFETERYGDKELKIATVNKLRQQIRNSL 120
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: K8ZA26_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZA26_NANGC)

HSP 1 Score: 50.1 bits (118), Expect = 1.510e-6
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   67 ASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            A ASV F+ +RYGDKELKIATVNKL+Q++RN++
Sbjct:   43 ARASVAFDPDRYGDKELKIATVNKLKQKLRNAI 75
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: A0A7S2QWC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWC3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.540e-6
Identity = 23/37 (62.16%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   55 VPGAASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            +PG A+ASV ++ +RYGDKELKIATVNK+RQ +R+++
Sbjct:   69 LPGQATASVFYDPDRYGDKELKIATVNKIRQNVRDAI 105
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: W7U1L4_9STRA (L-ascorbate peroxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.920e-6
Identity = 23/33 (69.70%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   67 ASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            A ASV F+ +RYGDKELKIATVNKL+Q++RN++
Sbjct:   88 ARASVAFDPDRYGDKELKIATVNKLKQKLRNAI 120
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: A0A7S1FWQ2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWQ2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.360e-5
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   22 GLGLGLAVTASV-PGAASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            GLG  LA +  + P  A A+V F+ +RYGDKELKIATVNKLRQ +R+++
Sbjct:   65 GLGSTLAASTLIQPQEAYATVFFDPDRYGDKELKIATVNKLRQNVRSTI 113
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: A0A835ZHI8_9STRA (Heme peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.410e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   37 LAVTASVPGAASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            LA+   VP A+ ASV FE +RYGDKELK+ TV+K+RQ  RN +
Sbjct:   56 LALATLVPTASEASVYFEIDRYGDKELKLGTVSKIRQAWRNKM 98
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BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Match: A0A7R9UI27_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UI27_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.420e-5
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    7 LAASVGLGLGLAVTASVPG-AASASVQFETERYGDKELKIATVNKLRQQIRNSV 165
            LA   G+ LG  V +S  G AASA+V  + +RYGDKELKIATV  ++QQ+RNS+
Sbjct:   82 LAKGFGVPLGALVLSSCGGSAASATVFLDPDRYGDKELKIATVASMKQQLRNSI 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8057.17046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LR83_ECTSI7.720e-1480.00PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
K8ZA26_NANGC1.510e-669.70Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2QWC3_9STRA3.540e-662.16Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
W7U1L4_9STRA8.920e-669.70L-ascorbate peroxidase n=1 Tax=Nannochloropsis gad... [more]
A0A7S1FWQ2_9STRA2.360e-557.14Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A835ZHI8_9STRA4.410e-558.14Heme peroxidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7R9UI27_9STRA4.420e-555.56Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8057contigL-elsbetiae_contig8057:7299..7463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D8LR83
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Peroxidase
EggNOG OGs2DJYV@1,2S61P@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816890.5790749-CDS-L-elsbetiae_contig8057:7298..74631622816890.5790749-CDS-L-elsbetiae_contig8057:7298..7463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8057 7299..7463 -
1691683890.5226367-CDS-L-elsbetiae_contig8057:7298..74631691683890.5226367-CDS-L-elsbetiae_contig8057:7298..7463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8057 7299..7463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8057.17046.1prot_L-elsbetiae_contig8057.17046.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8057 7299..7463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8057.17046.1

>prot_L-elsbetiae_contig8057.17046.1 ID=prot_L-elsbetiae_contig8057.17046.1|Name=mRNA_L-elsbetiae_contig8057.17046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
SSLAASVGLGLGLAVTASVPGAASASVQFETERYGDKELKIATVNKLRQQ
IRNSV
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mRNA from alignment at L-elsbetiae_contig8057:7299..7463-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8057.17046.1 ID=mRNA_L-elsbetiae_contig8057.17046.1|Name=mRNA_L-elsbetiae_contig8057.17046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig8057:7299..7463- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCCCTGGCGGCGTCGGTGGGGCTCGGCCTCGGCCTCGCGGTAACCGC
CTCCGTGCCGGGCGCCGCCAGCGCTTCGGTCCAGTTCGAGACGGAGCGAT
ACGGCGACAAGGAGCTCAAGATCGCCACCGTCAACAAGCTGAGGCAGCAG
ATCCGAAACTCGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8057:7299..7463-

>mRNA_L-elsbetiae_contig8057.17046.1 ID=mRNA_L-elsbetiae_contig8057.17046.1|Name=mRNA_L-elsbetiae_contig8057.17046.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig8057:7299..7463- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCCCTGGCGGCGTCGGTGGGGCTCGGCCTCGGCCTCGCGGTAACCGC
CTCCGTGCCGGGCGCCGCCAGCGCTTCGGTCCAGTTCGAGACGGAGCGAT
ACGGCGACAAGGAGCTCAAGATCGCCACCGTCAACAAGCTGAGGCAGCAG
ATCCGAAACTCGGTGTCGTCCCTGGCGGCGTCGGTGGGGCTCGGCCTCGG
CCTCGCGGTAACCGCCTCCGTGCCGGGCGCCGCCAGCGCTTCGGTCCAGT
TCGAGACGGAGCGATACGGCGACAAGGAGCTCAAGATCGCCACCGTCAAC
AAGCTGAGGCAGCAGATCCGAAACTCGGTG
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