mRNA_L-elsbetiae_contig8.16981.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8.16981.1 vs. uniprot
Match: D8LBH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH1_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 1.400e-129 Identity = 265/479 (55.32%), Postives = 314/479 (65.55%), Query Frame = 1 Query: 460 HPLFNLLSDEHHNHRLLRPSSVP--------RHVLISEAGPLRGVQLPGGPALELGPVSPPPGHAQAPPRSLSNIGNEWMIVPAEQFKQ-------QKEKTKTLEDKVKSHKRERVLIYDAAMKQAKKKEEEGVNEAKHTFERKQGNMRREVDSELSKISDLYQERCRDYATMVADECEGEVSKDVAELRKDWARQKMTIEQLVRSDGE-DRQVSVIARAVMEQLQEERKDEIAALRADIYSDVKMEFESREVALRDALESDFQADLDGQLLLAEIQHQKEIDALRLELGGGKATLAEAAAGAIVIHNAETPRREEKGEGASGASSSARSPSLSRRPLQR-KMGSSVGGN----------------LGRKFPVFKTPVQKPLPDVGSKNSQSRPAATIKPRIRTKKVPRTPAPTTDEDDVHTTPVRKQESQPDGDLTSALMVSPTKAV-GIVTPLINSDGRGSGGGESSRPEKRAKKLF 1794 H LF LL + ++LR +++P R+ E G + LP G +LGP PP R S WMIV EQ +Q Q EK K LE VK HKRERVLIYDAAMKQA K+E EGVNE K ER+QG MR EVD E+ KISDLYQERCRDYATMV+DEC+GE SK +LRKDWARQK TI+QLVRS GE DRQVSVIARAV+EQLQEER+DEIA+LRA IYSDVKMEFESREVALRD LESDFQADLDGQLLLAEI+HQKE++ LR+EL G + EA G IV++N ETP+ +G+ +SG SS SPS SRRPL + + + GGN LGRKFPVFKTPVQK +P +K + ++ R PR + + TTP+R+QE + D +TSALMVSPTKA+ G+VTP I S+G SG G SSRP+KRAKKLF Sbjct: 21 HRLFTLLESSESDAQVLRGAALPHGSFGGLPRNTRRLEEGNV----LPAGSGTQLGPALPPLNVEGGKERHQSK----WMIVSKEQVEQTAEKMRDQAEKNKALETTVKIHKRERVLIYDAAMKQAAKRELEGVNEVKQVLERQQGMMRAEVDQEMQKISDLYQERCRDYATMVSDECDGEDSKAATDLRKDWARQKKTIDQLVRSGGEEDRQVSVIARAVVEQLQEERRDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTGEIVVYNPETPQCAGRGQRSSGTSSFTPSPSFSRRPLHKMNISEASGGNSGADGVHVPTTPRGTQLGRKFPVFKTPVQKQIPGASNKKAVRPKEHPVRDSTRQ---PRNSSVGRHTEISTTTPIREQEDELDVGITSALMVSPTKAIYGVVTPSIGSEGEVSGEG-SSRPKKRAKKLF 487
BLAST of mRNA_L-elsbetiae_contig8.16981.1 vs. uniprot
Match: A0A6H5KNT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT9_9PHAE) HSP 1 Score: 380 bits (975), Expect = 1.850e-121 Identity = 285/575 (49.57%), Postives = 343/575 (59.65%), Query Frame = 1 Query: 238 PQQRKKVRFACDEPE-------IDDHSPSPRPFLSFDIPA-TSDTTKPQGPEKAVEP-------SMQMVPYVSRSSGRDSTTTVENRDK--------HPLFNLLSDEHHNH-RLLRPSSVPRHV---LISEAGPLRGVQLPGGPALELGPVSPPPGHAQAPPRSLSNIGNEWMIVPAEQFKQ-------QKEKTKTLEDKVKSHKRERVLIYDAAMKQAKKKEEEGVNEAKHTFERKQGNMRREVDSELSKISDLYQERCRDYATMVADECEGEVSKDVAELRKDWARQKMTIEQLVRSDGE-DRQVSVIARAVMEQLQEERKDEIAALRADIYSDVKMEFESREVALRDALESDFQADLDGQLLLAEIQHQKEIDALRLELGGGKATLAEAAAGAIVIHNAETPRREEKGEGASGASSSARSPSLSRRPLQR-KMGSSVGGN----------------LGRKFPVFKTPVQKPLPDVGSKNS---QSRPAATIKPRIRTKKVPRTPAPTTDEDDVHTTPVRKQESQPDGDLTSALMVSPTKAV-GIVTPLINSDGRGSGGGESSRPEKRAKKLF 1794 P+ K+VRFA D+PE D S P D+P TS T P E S PY S + G S V H LF LL + +H ++LR +++P L + +G LP G +LGPV P + ++WMIV EQ +Q Q EK K LE VKSHKRERVLIYDAAMKQA K+E EGV+E K ER+QG MR EVD E+ KISDLYQERCRDYA MV+DEC+GE SK V +LRKDWARQK TI+QLVRS E DRQVS IARAV+EQLQEER DEIA+LRA IYSDVKMEFESREVALRD LESDFQADLDGQLLLAEI+HQKE++ LR+EL G + EA I+++N ET + G+ +SGASS SPS SRR L + +G + GGN LGRKFPVFKTPVQK +P +G+K + + P + + R R +T TP+R+ E D +TSALMVSPTKA+ G+VTP I S+G SG G SSRP+KRAKKLF Sbjct: 5 PKTPKRVRFA-DQPESNPKGESADSISTRPSSQRGIDVPRETSIRTLTPFPSLGREDEGDIKSQSCGQDPYESSARGMQSLAIVPYSGGGAAGQPPCHHLFALLEECSGSHAQVLRDAALPHGSFGGLPTNTRLEKGNGLPAGSGTQLGPVLSPLNVEGG----KEHYQSKWMIVSKEQVEQTAKKMRDQAEKNKALETTVKSHKRERVLIYDAAMKQAAKRELEGVDEVKQVLERQQGMMRAEVDQEMRKISDLYQERCRDYARMVSDECDGEDSKAVTDLRKDWARQKKTIDQLVRSSREEDRQVSAIARAVVEQLQEERSDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTSEIIVYNPETLQCAGSGQRSSGASSFTASPSFSRRHLHKMNIGEASGGNSGAGGVHVPTTPRGTQLGRKFPVFKTPVQKKIPGIGNKKAVRPKGHPVSDSTRKSRNSSAGRHTKIST------ITPIREHEDYLDVGITSALMVSPTKAIHGVVTPSIGSEGGVSGEG-SSRPKKRAKKLF 567 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8.16981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8.16981.1 >prot_L-elsbetiae_contig8.16981.1 ID=prot_L-elsbetiae_contig8.16981.1|Name=mRNA_L-elsbetiae_contig8.16981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=531bp MDEAMSCQENSPQQRKKVRFACDEPEIDDHSPSPRPFLSFDIPATSDTTKback to top mRNA from alignment at L-elsbetiae_contig8:74542..78528- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8.16981.1 ID=mRNA_L-elsbetiae_contig8.16981.1|Name=mRNA_L-elsbetiae_contig8.16981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3987bp|location=Sequence derived from alignment at L-elsbetiae_contig8:74542..78528- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8:74542..78528- >mRNA_L-elsbetiae_contig8.16981.1 ID=mRNA_L-elsbetiae_contig8.16981.1|Name=mRNA_L-elsbetiae_contig8.16981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3186bp|location=Sequence derived from alignment at L-elsbetiae_contig8:74542..78528- (Laminarionema elsbetiae ELsaHSoW15)back to top |