mRNA_L-elsbetiae_contig8.16972.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8.16972.1
Unique NamemRNA_L-elsbetiae_contig8.16972.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8contigL-elsbetiae_contig8:1925..2612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.6541834-CDS-L-elsbetiae_contig8:1924..22901622816883.6541834-CDS-L-elsbetiae_contig8:1924..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8 1925..2290 +
1691683885.3553052-CDS-L-elsbetiae_contig8:1924..22901691683885.3553052-CDS-L-elsbetiae_contig8:1924..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8 1925..2290 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.6722105-UTR-L-elsbetiae_contig8:2290..26121622816883.6722105-UTR-L-elsbetiae_contig8:2290..2612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8 2291..2612 +
1691683885.3739939-UTR-L-elsbetiae_contig8:2290..26121691683885.3739939-UTR-L-elsbetiae_contig8:2290..2612Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8 2291..2612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8.16972.1prot_L-elsbetiae_contig8.16972.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8 1925..2290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8.16972.1

>prot_L-elsbetiae_contig8.16972.1 ID=prot_L-elsbetiae_contig8.16972.1|Name=mRNA_L-elsbetiae_contig8.16972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
VSGRIRKIDFIQQFIPRQKHAHHFPAKFLRPRPSALAPIACITFSTSGNG
LLRPQSPPATFTLLSRTRHVNEQGGRAVGACRRPCESSQWRVPSCRRFSC
LFCIPNFFVALQSETRSQLSG*
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mRNA from alignment at L-elsbetiae_contig8:1925..2612+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8.16972.1 ID=mRNA_L-elsbetiae_contig8.16972.1|Name=mRNA_L-elsbetiae_contig8.16972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=688bp|location=Sequence derived from alignment at L-elsbetiae_contig8:1925..2612+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTCAGGTCGGATTCGTAAAATCGATTTCATCCAACAGTTCATCCCCCG
TCAAAAACATGCCCATCATTTTCCCGCCAAGTTCCTCCGCCCGCGCCCCA
GCGCGCTCGCCCCCATCGCTTGCATAACTTTTTCGACATCTGGGAACGGT
CTCCTTCGCCCCCAGTCTCCGCCCGCGACTTTTACGCTCCTCTCTCGTAC
TAGACACGTGAATGAACAAGGTGGCCGTGCTGTCGGGGCCTGTCGACGGC
CGTGCGAATCATCACAGTGGCGCGTGCCCAGCTGTCGACGCTTTTCGTGT
CTCTTTTGTATTCCGAACTTTTTTGTGGCTCTACAAAGCGAGACCCGGAG
CCAGCTGTCGGGGTAGCAGGTAGAGGATCAGATCCAGAACTAAAGCAGCC
ACGGTGGCGGCCTGCTTCCTTGCTACGGCGGCTGGAGAGCCGAAGCCAGC
GTCTCAGCTTGATTAACCGTCGGGTCGTTGCTCGCAGTGCGGTTGGTTGT
CCAGTTTCTTCTCACGCAACTGGTCCAAAAACAAGGCTCTCGTTTGTTTT
TTTATGAGATCGCGTATTCAACTATTATCTCGCCGTACCCAGCGTTGGTC
TACGACAAACAAACAAGCAAAGCCCCCGGGCTGTTCGCGGGCTGTAAATT
TTACCTGCGCCTATCGTCCCGGCGATCATCCCTACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8:1925..2612+

>mRNA_L-elsbetiae_contig8.16972.1 ID=mRNA_L-elsbetiae_contig8.16972.1|Name=mRNA_L-elsbetiae_contig8.16972.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig8:1925..2612+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTCAGGTCGGATTCGTAAAATCGATTTCATCCAACAGTTCATCCCCCG
TCAAAAACATGCCCATCATTTTCCCGCCAAGTTCCTCCGCCCGCGCCCCA
GCGCGCTCGCCCCCATCGCTTGCATAACTTTTTCGACATCTGGGAACGGT
CTCCTTCGCCCCCAGTCTCCGCCCGCGACTTTTACGCTCCTCTCTCGTAC
TAGACACGTGAATGAACAAGGTGGCCGTGCTGTCGGGGCCTGTCGACGGC
CGTGCGAATCATCACAGTGGCGCGTGCCCAGCTGTCGACGCTTTTCGTGT
CTCTTTTGTATTCCGAACTTTTTTGTGGCTCTACAAAGCGAGACCCGGAG
CCAGCTGTCGGGGTAGGTCTCAGGTCGGATTCGTAAAATCGATTTCATCC
AACAGTTCATCCCCCGTCAAAAACATGCCCATCATTTTCCCGCCAAGTTC
CTCCGCCCGCGCCCCAGCGCGCTCGCCCCCATCGCTTGCATAACTTTTTC
GACATCTGGGAACGGTCTCCTTCGCCCCCAGTCTCCGCCCGCGACTTTTA
CGCTCCTCTCTCGTACTAGACACGTGAATGAACAAGGTGGCCGTGCTGTC
GGGGCCTGTCGACGGCCGTGCGAATCATCACAGTGGCGCGTGCCCAGCTG
TCGACGCTTTTCGTGTCTCTTTTGTATTCCGAACTTTTTTGTGGCTCTAC
AAAGCGAGACCCGGAGCCAGCTGTCGGGGTAG
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