mRNA_L-elsbetiae_contig7995.16966.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7995.16966.1
Unique NamemRNA_L-elsbetiae_contig7995.16966.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7995.16966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7995contigL-elsbetiae_contig7995:920..2021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size541
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7995.16966.1prot_L-elsbetiae_contig7995.16966.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7995 1080..2021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.211237-UTR-L-elsbetiae_contig7995:919..10791622816883.211237-UTR-L-elsbetiae_contig7995:919..1079Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7995 920..1079 +
1691683885.0711603-UTR-L-elsbetiae_contig7995:919..10791691683885.0711603-UTR-L-elsbetiae_contig7995:919..1079Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7995 920..1079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816883.2212653-CDS-L-elsbetiae_contig7995:1079..14111622816883.2212653-CDS-L-elsbetiae_contig7995:1079..1411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 1080..1411 +
1691683885.0807354-CDS-L-elsbetiae_contig7995:1079..14111691683885.0807354-CDS-L-elsbetiae_contig7995:1079..1411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 1080..1411 +
1622816883.231048-CDS-L-elsbetiae_contig7995:1972..20211622816883.231048-CDS-L-elsbetiae_contig7995:1972..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 1973..2021 +
1691683885.0896316-CDS-L-elsbetiae_contig7995:1972..20211691683885.0896316-CDS-L-elsbetiae_contig7995:1972..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7995 1973..2021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7995.16966.1

>prot_L-elsbetiae_contig7995.16966.1 ID=prot_L-elsbetiae_contig7995.16966.1|Name=mRNA_L-elsbetiae_contig7995.16966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MGLFGVAYGRHSVFLPNQPQRSPRRKLASTDHHVLQHQPRSQRRHDVGDD
GRRRKCASGRRQPQRRPGSPHEVPRQSLASFREERAERLRSMREAAAGDR
ASRHAAEEGRRSIAVQRNRETTAASRE
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mRNA from alignment at L-elsbetiae_contig7995:920..2021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7995.16966.1 ID=mRNA_L-elsbetiae_contig7995.16966.1|Name=mRNA_L-elsbetiae_contig7995.16966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1102bp|location=Sequence derived from alignment at L-elsbetiae_contig7995:920..2021+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGGAGGGAAAATTATATATCGCCGAGAGTATCACACACTCTGTGCAGG
TTAATAAGGGAGAGAGACCTTGAACCTTGAGCATTCGCATCCACGTCTTC
AATACGCGGGAGGTTCGTTGCGTCAGCTGACGCGATGACGCGGCCCGTCA
GCTGACGGCGATGGGGCTTTTTGGGGTCGCCTACGGGCGTCATTCCGTTT
TTCTCCCCAACCAGCCTCAACGTTCTCCTCGCCGTAAGCTCGCCTCCACC
GATCACCATGTCCTCCAACACCAACCAAGAAGTCAGCGACGCCATGATGT
GGGCGATGATGGACGAAGACGCAAATGCGCAAGCGGCCGTCGTCAACCTC
AACGACGGCCTGGATCGCCGCATGAGGTACCTCGACAAAGTCTTGCTTCA
TTTCGCGAGGAACGAGCAGAGCGTTTGCGGAGCATGAGGGAGGCGGCCGC
AGGAGATAGGGCTTCGCGTCACGCTGCTGAGGAGGGCAGGAGGTTAGTCG
AAATACAGCAACAGCGTGGGCGTCTAGGCTGCATTACGTACACAACAAAC
CCTCCGCATTCCTGTTGTTTTCATACTGCCAATTCCTTCTCTTACACCGC
CTTTTCTACCGCCGCCGCTGCGCACGTTAGCATCGAAATAACGGTTAATG
CAACATTCAACGGCACTGCTTTGTTGAGGACCTATGTAGACCACGCGAAG
GACTTGCCTTTTACCTTTTTGTCGTACTCGTCGCGGGGGTATTATACAAA
ATGAGATAGTGCGGAGAAATTTCCGCGCATCCTTGCGCACGCACGCCACC
TCTTCCCCCAGTAGCAAACGATAGGGAGCGTGCCTGCCTCTCTATTTCTA
TCTCATATTTCATCCGTGTCGGCAACCAAGATGCCATCACTCTCTTGTGG
GTCACAGGAAATATGTACAGCAGTATGTGGGTAGAGCGGTTAAATTTTGA
AATCTCAAGTCTATCGCCTTCGCAAATAACTACCCATGCACTCAATACTA
ATTTTTGTACTTCGGCCGACCCGGACCGCGTCCCTGTTGCTGCAACGTTG
CAGATCGATCGCTGTACAGCGTAATCGGGAAACTACGGCTGCGTCGCGAG
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7995:920..2021+

>mRNA_L-elsbetiae_contig7995.16966.1 ID=mRNA_L-elsbetiae_contig7995.16966.1|Name=mRNA_L-elsbetiae_contig7995.16966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig7995:920..2021+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTTTTTGGGGTCGCCTACGGGCGTCATTCCGTTTTTCTCCCCAA
CCAGCCTCAACGTTCTCCTCGCCGTAAGCTCGCCTCCACCGATCACCATG
TCCTCCAACACCAACCAAGAAGTCAGCGACGCCATGATGTGGGCGATGAT
GGACGAAGACGCAAATGCGCAAGCGGCCGTCGTCAACCTCAACGACGGCC
TGGATCGCCGCATGAGGTACCTCGACAAAGTCTTGCTTCATTTCGCGAGG
AACGAGCAGAGCGTTTGCGGAGCATGAGGGAGGCGGCCGCAGGAGATAGG
GCTTCGCGTCACGCTGCTGAGGAGGGCAGGAGATGGGGCTTTTTGGGGTC
GCCTACGGGCGTCATTCCGTTTTTCTCCCCAACCAGCCTCAACGTTCTCC
TCGCCGTAAGCTCGCCTCCACCGATCACCATGTCCTCCAACACCAACCAA
GAAGTCAGCGACGCCATGATGTGGGCGATGATGGACGAAGACGCAAATGC
GCAAGCGGCCGTCGTCAACCTCAACGACGGCCTGGATCGCCGCATGAGGT
ACCTCGACAAAGTCTTGCTTCATTTCGCGAGGAACGAGCAGAGCGTTTGC
GGAGCATGAGGGAGGCGGCCGCAGGAGATAGGGCTTCGCGTCACGCTGCT
GAGGAGGGCAGGAGATCGATCGCTGTACAGCGTAATCGGGAAACTACGGC
TGCGTCGCGAGAAATCGATCGCTGTACAGCGTAATCGGGAAACTACGGCT
GCGTCGCGAGAA
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