mRNA_L-elsbetiae_contig797.16940.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig797.16940.1
Unique NamemRNA_L-elsbetiae_contig797.16940.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig797.16940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig797contigL-elsbetiae_contig797:23027..23584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig797.16940.1prot_L-elsbetiae_contig797.16940.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig797 23208..23534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.1481836-UTR-L-elsbetiae_contig797:23026..232071622816881.1481836-UTR-L-elsbetiae_contig797:23026..23207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 23027..23207 +
1691683883.6066968-UTR-L-elsbetiae_contig797:23026..232071691683883.6066968-UTR-L-elsbetiae_contig797:23026..23207Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 23027..23207 +
1622816881.175383-UTR-L-elsbetiae_contig797:23534..235841622816881.175383-UTR-L-elsbetiae_contig797:23534..23584Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 23535..23584 +
1691683883.6275024-UTR-L-elsbetiae_contig797:23534..235841691683883.6275024-UTR-L-elsbetiae_contig797:23534..23584Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig797 23535..23584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816881.1589696-CDS-L-elsbetiae_contig797:23207..235341622816881.1589696-CDS-L-elsbetiae_contig797:23207..23534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 23208..23534 +
1691683883.6186504-CDS-L-elsbetiae_contig797:23207..235341691683883.6186504-CDS-L-elsbetiae_contig797:23207..23534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig797 23208..23534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig797.16940.1

>prot_L-elsbetiae_contig797.16940.1 ID=prot_L-elsbetiae_contig797.16940.1|Name=mRNA_L-elsbetiae_contig797.16940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MIMSPTTCRSEDRGCDGTGSVDAVDGTPRAGRRLVDACVSSSFCLAQDPE
WSQRTEIRVEECLDFFVALGAGRCATIEDLRSPAVPCPPRQRRSDPNRAY
WLGVSGQR*
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mRNA from alignment at L-elsbetiae_contig797:23027..23584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig797.16940.1 ID=mRNA_L-elsbetiae_contig797.16940.1|Name=mRNA_L-elsbetiae_contig797.16940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig797:23027..23584+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGGCTCTCGATCCAACCAGGAGGCGGAGGTCCCTGGAAGTGGTGCG
GAGTGGCGGTTTGGGCGATGTCACCGCCGCGGCGTGAGCTGGTGCTCGTG
CTGTTGCCAACGCCCCCACTGCTGCTGCTGTGCGGTGCCCTGGCAAACGG
GTGTGGCATGTGCTGATGCGGTCCGGGATCCATGATCATGTCTCCGACGA
CCTGCAGAAGTGAAGATCGTGGTTGCGATGGCACTGGTTCAGTAGATGCC
GTGGATGGTACGCCTCGAGCGGGCAGGCGTCTCGTAGACGCGTGCGTCTC
GTCCTCCTTCTGTCTCGCTCAGGATCCGGAGTGGAGCCAGAGGACCGAGA
TCAGGGTGGAAGAATGTCTTGACTTTTTTGTCGCTTTGGGGGCTGGGCGT
TGTGCAACAATAGAAGATCTTCGCTCGCCGGCCGTCCCTTGCCCACCACG
GCAACGTCGCTCGGATCCGAACAGGGCGTACTGGCTTGGAGTATCGGGAC
AACGATAAATCCGTAAGTCGGGTAGATGAGAGTGTGCGTGTTGTGTGTGT
GCGTTTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig797:23027..23584+

>mRNA_L-elsbetiae_contig797.16940.1 ID=mRNA_L-elsbetiae_contig797.16940.1|Name=mRNA_L-elsbetiae_contig797.16940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig797:23027..23584+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCATGTCTCCGACGACCTGCAGAAGTGAAGATCGTGGTTGCGATGG
CACTGGTTCAGTAGATGCCGTGGATGGTACGCCTCGAGCGGGCAGGCGTC
TCGTAGACGCGTGCGTCTCGTCCTCCTTCTGTCTCGCTCAGGATCCGGAG
TGGAGCCAGAGGACCGAGATCAGGGTGGAAGAATGTCTTGACTTTTTTGT
CGCTTTGGGGGCTGGGCGTTGTGCAACAATAGAAGATCTTCGCTCGCCGG
CCGTCCCTTGCCCACCACGGCAACGTCGCTCGGATCCGAACAGGGCGTAC
TGGCTTGGAGTATCGGGACAACGATAAATGATCATGTCTCCGACGACCTG
CAGAAGTGAAGATCGTGGTTGCGATGGCACTGGTTCAGTAGATGCCGTGG
ATGGTACGCCTCGAGCGGGCAGGCGTCTCGTAGACGCGTGCGTCTCGTCC
TCCTTCTGTCTCGCTCAGGATCCGGAGTGGAGCCAGAGGACCGAGATCAG
GGTGGAAGAATGTCTTGACTTTTTTGTCGCTTTGGGGGCTGGGCGTTGTG
CAACAATAGAAGATCTTCGCTCGCCGGCCGTCCCTTGCCCACCACGGCAA
CGTCGCTCGGATCCGAACAGGGCGTACTGGCTTGGAGTATCGGGACAACG
ATAA
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