mRNA_L-elsbetiae_contig7952.16920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7952.16920.1
Unique NamemRNA_L-elsbetiae_contig7952.16920.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7952.16920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7952contigL-elsbetiae_contig7952:6026..8124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1101
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7952.16920.1prot_L-elsbetiae_contig7952.16920.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7952 7420..8043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.7460887-UTR-L-elsbetiae_contig7952:6025..64151622816879.7460887-UTR-L-elsbetiae_contig7952:6025..6415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7952 6026..6415 +
1691683882.7112534-UTR-L-elsbetiae_contig7952:6025..64151691683882.7112534-UTR-L-elsbetiae_contig7952:6025..6415Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7952 6026..6415 +
1622816879.7592227-UTR-L-elsbetiae_contig7952:7413..74191622816879.7592227-UTR-L-elsbetiae_contig7952:7413..7419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7952 7414..7419 +
1691683882.723128-UTR-L-elsbetiae_contig7952:7413..74191691683882.723128-UTR-L-elsbetiae_contig7952:7413..7419Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7952 7414..7419 +
1622816879.7801633-UTR-L-elsbetiae_contig7952:8043..81241622816879.7801633-UTR-L-elsbetiae_contig7952:8043..8124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7952 8044..8124 +
1691683882.7465572-UTR-L-elsbetiae_contig7952:8043..81241691683882.7465572-UTR-L-elsbetiae_contig7952:8043..8124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7952 8044..8124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.7693272-CDS-L-elsbetiae_contig7952:7419..80431622816879.7693272-CDS-L-elsbetiae_contig7952:7419..8043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7952 7420..8043 +
1691683882.7341733-CDS-L-elsbetiae_contig7952:7419..80431691683882.7341733-CDS-L-elsbetiae_contig7952:7419..8043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7952 7420..8043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7952.16920.1

>prot_L-elsbetiae_contig7952.16920.1 ID=prot_L-elsbetiae_contig7952.16920.1|Name=mRNA_L-elsbetiae_contig7952.16920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MAESWPTSTSSQAVRHTAGCSCDILAATPLGAGVAADVDTAVGDHPVAGE
EDTVAQPPPAVPAVDAGLPPPMPRRLDLFSRPAPSPTSTLPSLALATWTP
QRARRTQKLKEPLPPMQGCPPHAPRIGTRLFSWQRTLMEAKVAMVSLSSL
MTPTPTWVGKSPWRRSCRRGPWRSPLMRPRSRAKQRPNRQPLWQICSVLR
MDGTPFL*
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mRNA from alignment at L-elsbetiae_contig7952:6026..8124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7952.16920.1 ID=mRNA_L-elsbetiae_contig7952.16920.1|Name=mRNA_L-elsbetiae_contig7952.16920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2099bp|location=Sequence derived from alignment at L-elsbetiae_contig7952:6026..8124+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCGACGAACCGTAACAGAAAAGAGCACTCTGCTGTCCGCAGAGAGACG
AGAGCTCATAACTCTCCAACGGCGTTACTAGCAGTACACCCTCTTATAGT
AAAACGAATTTTTCCAGCAGCCCTAGATATGTTGTAGGAAGCGGCGGGAT
TCCCCCCCTTAGGAGTCTGAATTCCAGATGTCGCCCCCCCCTTTACTTGG
CGTCGTCAGACAGGTTGAAGTGCGAGGGGGAGCCGGTAAGGAGCACCCCA
GGGTCTCGTTTTGGGGTCTCGTTTTATAAACGGCGACCCCAGAACCCGGT
GGCACCCCTGGGCACTCTCCCCTCACCGGTGCTCGGCCCACAGTCCTGGA
GACCTCTCAGTCCCGTCACACCACCTTCGGACCTCTCGACGTGAGTGTGG
CTTTGTTGGCGCGCAAAATTAGGGGCAATCGAACGCTGATAGCAGTGCTG
CATTGGTGCCGCTCACTGACAGCAGTGCTGCCGCTCGCTGACAGCAGTGC
TGCGTTCGCTACCCAAGGTGTTGCCACATGACTTCTAGGCGAATCTGCGA
AGGATTCGTTCGTGTTGTCCCTGCTGCGCTGACGAAGAGACGCAACTCCT
TGTTGTTCTCCCTTCCGCTCAATCCCCTGCTGTTGTAGGACGCCGTGTGC
ATGTGCATGACGAGTTGAACAAATAGGTTTTACATCTAACAAGCCTTACC
TACCCCGGTGCCTCCAGAGTGCAGTCTACCACAACAGGTGTAAGAGCCAT
ACGGTTGGCAGACACATATCTATATCTATCTAGGCCAGCATCCCAGCTAC
TACAAGTACACGCGATCTGTTTGTAGTCTTTGTGTACATGTTGGACAAAT
ACTACATACGTGCCCGTGATGCGGACCCACCCACCGCAACGTGCAGCCGT
GTATTCCACTCGGTTAGTAGATACAGGCAGTGTTGACCTCTAGGCGAATC
TTCGAAGGGTGCTTTCGTTTTGTCCTCTGAGAAAGGAAAGATACTGCTGT
GCTGCCGAAGCTGCGAAGGATACTTCCGTTTTGTCCTCTGAGAAAGGAAA
GACACTGCAACCTGCTGTGCTGCCGAAGAGACGTGTGCGCAAGGTCTCCC
TCCTGCGCTTTATGAAACTGTTACTGCTGTAGGACGCCGTGCGCATAGCC
AGTTTACCAATATAGGTGTGCTTCGAACAAGCCCTACCTACCCCAATGCG
TTCAGTTGCTTGCGAGCACAAAAATAGTAAAAGTCTATCTAGGCCGCCAT
CCCAGCTACTACTACTGCGGTCTGTTTGTGTAGTGTACATAGCGTACAAG
TTGGACATAACGTGCCCGTGGTGCGGAACCATCCACCGCAACGTCCTTGT
CTCAAATTCCTGTCTGTCTCACAACCTTGGCTCAAAAGGTGACCATGGCC
GAATCCTGGCCAACATCGACGAGCTCGCAGGCTGTTCGGCATACCGCTGG
TTGTTCGTGCGACATTCTCGCGGCTACACCTTTGGGGGCCGGCGTCGCCG
CCGACGTCGACACTGCCGTCGGCGATCACCCTGTGGCGGGGGAGGAGGAC
ACAGTCGCTCAGCCCCCCCCTGCTGTCCCCGCTGTCGATGCAGGGTTGCC
CCCGCCCATGCCCCGTAGATTGGATCTTTTTTCACGGCCGGCCCCGTCGC
CGACCTCCACGCTGCCTTCGCTGGCGCTCGCTACGTGGACTCCGCAGAGG
GCGAGGAGGACACAGAAGCTGAAGGAACCCCTGCCGCCGATGCAGGGTTG
CCCCCCCCATGCCCCGCGAATTGGGACACGCCTTTTTTCATGGCAACGCA
CGTTAATGGAGGCGAAAGTGGCGATGGTTTCTCTATCGTCGTTGATGACG
CCGACACCAACGTGGGTGGGGAAGAGCCCGTGGAGGAGGTCGTGTAGGAG
GGGCCCATGGAGGAGCCCGCTGATGAGGCCGCGGAGTAGGGCGAAACAGC
GGCCAAATCGGCAACCTTTGTGGCAGATTTGTTCGGTGTTACGAATGGAT
GGCACGCCATTTTTGTGAAAATGTATTCCTCAGTGAAGTATGGGTAATTA
GGAATGTGTTGAACACGAACGATGCCAGTCAGCAATCGCGCAGAACGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7952:6026..8124+

>mRNA_L-elsbetiae_contig7952.16920.1 ID=mRNA_L-elsbetiae_contig7952.16920.1|Name=mRNA_L-elsbetiae_contig7952.16920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig7952:6026..8124+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGAATCCTGGCCAACATCGACGAGCTCGCAGGCTGTTCGGCATAC
CGCTGGTTGTTCGTGCGACATTCTCGCGGCTACACCTTTGGGGGCCGGCG
TCGCCGCCGACGTCGACACTGCCGTCGGCGATCACCCTGTGGCGGGGGAG
GAGGACACAGTCGCTCAGCCCCCCCCTGCTGTCCCCGCTGTCGATGCAGG
GTTGCCCCCGCCCATGCCCCGTAGATTGGATCTTTTTTCACGGCCGGCCC
CGTCGCCGACCTCCACGCTGCCTTCGCTGGCGCTCGCTACGTGGACTCCG
CAGAGGGCGAGGAGGACACAGAAGCTGAAGGAACCCCTGCCGCCGATGCA
GGGTTGCCCCCCCCATGCCCCGCGAATTGGGACACGCCTTTTTTCATGGC
AACGCACGTTAATGGAGGCGAAAGTGGCGATGGTTTCTCTATCGTCGTTG
ATGACGCCGACACCAACGTGGGTGGGGAAGAGCCCGTGGAGGAGGTCGTG
TAGGAGGGGCCCATGGAGGAGCCCGCTGATGAGGCCGCGGAGTAGGGCGA
AACAGCGGCCAAATCGGCAACCTTTGTGGCAGATTTGTTCGGTGTTACGA
ATGGATGGCACGCCATTTTTGTGAATGGCCGAATCCTGGCCAACATCGAC
GAGCTCGCAGGCTGTTCGGCATACCGCTGGTTGTTCGTGCGACATTCTCG
CGGCTACACCTTTGGGGGCCGGCGTCGCCGCCGACGTCGACACTGCCGTC
GGCGATCACCCTGTGGCGGGGGAGGAGGACACAGTCGCTCAGCCCCCCCC
TGCTGTCCCCGCTGTCGATGCAGGGTTGCCCCCGCCCATGCCCCGTAGAT
TGGATCTTTTTTCACGGCCGGCCCCGTCGCCGACCTCCACGCTGCCTTCG
CTGGCGCTCGCTACGTGGACTCCGCAGAGGGCGAGGAGGACACAGAAGCT
GAAGGAACCCCTGCCGCCGATGCAGGGTTGCCCCCCCCATGCCCCGCGAA
TTGGGACACGCCTTTTTTCATGGCAACGCACGTTAATGGAGGCGAAAGTG
GCGATGGTTTCTCTATCGTCGTTGATGACGCCGACACCAACGTGGGTGGG
GAAGAGCCCGTGGAGGAGGTCGTGTAGGAGGGGCCCATGGAGGAGCCCGC
TGATGAGGCCGCGGAGTAGGGCGAAACAGCGGCCAAATCGGCAACCTTTG
TGGCAGATTTGTTCGGTGTTACGAATGGATGGCACGCCATTTTTGTGA
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