mRNA_L-elsbetiae_contig795.16916.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig795.16916.1
Unique NamemRNA_L-elsbetiae_contig795.16916.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig795.16916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig795contigL-elsbetiae_contig795:11949..12658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size388
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816879.4726496-CDS-L-elsbetiae_contig795:11950..120371622816879.4726496-CDS-L-elsbetiae_contig795:11950..12037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 11951..12037 -
1691683882.5191534-CDS-L-elsbetiae_contig795:11950..120371691683882.5191534-CDS-L-elsbetiae_contig795:11950..12037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 11951..12037 -
1622816879.4826462-CDS-L-elsbetiae_contig795:12361..126581622816879.4826462-CDS-L-elsbetiae_contig795:12361..12658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 12362..12658 -
1691683882.5301518-CDS-L-elsbetiae_contig795:12361..126581691683882.5301518-CDS-L-elsbetiae_contig795:12361..12658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig795 12362..12658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig795.16916.1prot_L-elsbetiae_contig795.16916.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig795 11951..12658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig795.16916.1

>prot_L-elsbetiae_contig795.16916.1 ID=prot_L-elsbetiae_contig795.16916.1|Name=mRNA_L-elsbetiae_contig795.16916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
AVAAAAAGLECSSDEEASELKLEERRLPSATAAGQVAPEALADDAAEDMA
RSTENVAAAGTAQTWPAAPEVIGAMPQVGEAQQATAMSEETTAIGDGSKI
HDHDTQRGNAAATLRQRELWPTLREADE
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mRNA from alignment at L-elsbetiae_contig795:11949..12658-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig795.16916.1 ID=mRNA_L-elsbetiae_contig795.16916.1|Name=mRNA_L-elsbetiae_contig795.16916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=710bp|location=Sequence derived from alignment at L-elsbetiae_contig795:11949..12658- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGGCCGCGGCAGCAGCGGGGCTCGAATGCAGTTCGGACGAGGAGGC
GTCCGAGCTGAAGCTGGAGGAGCGGCGGCTACCTTCGGCTACTGCCGCAG
GGCAAGTGGCACCCGAGGCACTTGCCGATGATGCCGCAGAGGACATGGCT
AGATCTACGGAGAATGTAGCGGCTGCGGGAACGGCACAAACCTGGCCGGC
AGCCCCGGAGGTCATCGGCGCGATGCCTCAAGTGGGAGAAGCGCAGCAGG
CGACGGCAATGTCCGAAGAGACTACGGCCATCGGAGACGGCAGCAAGGTA
AGCGATTCGAACCCTACTACTCCTCTTTATGTGAGGCTGGGGAAATCGGT
TTTCTGTGAGGCTGGGGGAAATCGACGACGTCAAAAACTGCCGCCGGGAC
GAGCTGTAAGCTTATTTTAGGTGGAAGGAGCTGCGGCGATAGCTGCGGAC
ATTGAACAGGTGGTTGGGGGTGAGTTGCGTGCTGTCGCCCGAAAGGCGGA
CCTGTTTTTCCGTTCTGAGCTTTTGTGAGCAATCCATGCCCGTGTTTCAA
CTTACGATACATCTGCTTGTTCCGCCTTTTGTGGTTTGCTGCTGCTGCTG
CTGCTGCTTCTTTTTCGCAAGATACACGACCACGACACTCAGAGGGGTAA
CGCTGCGGCGACGCTCCGGCAGCGTGAGCTTTGGCCAACGCTCCGAGAGG
CAGACGAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig795:11949..12658-

>mRNA_L-elsbetiae_contig795.16916.1 ID=mRNA_L-elsbetiae_contig795.16916.1|Name=mRNA_L-elsbetiae_contig795.16916.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig795:11949..12658- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGGCCGCGGCAGCAGCGGGGCTCGAATGCAGTTCGGACGAGGAGGC
GTCCGAGCTGAAGCTGGAGGAGCGGCGGCTACCTTCGGCTACTGCCGCAG
GGCAAGTGGCACCCGAGGCACTTGCCGATGATGCCGCAGAGGACATGGCT
AGATCTACGGAGAATGTAGCGGCTGCGGGAACGGCACAAACCTGGCCGGC
AGCCCCGGAGGTCATCGGCGCGATGCCTCAAGTGGGAGAAGCGCAGCAGG
CGACGGCAATGTCCGAAGAGACTACGGCCATCGGAGACGGCAGCAAGGCG
GTGGCCGCGGCAGCAGCGGGGCTCGAATGCAGTTCGGACGAGGAGGCGTC
CGAGCTGAAGCTGGAGGAGCGGCGGCTACCTTCGGCTACTGCCGCAGGGC
AAGTGGCACCCGAGGCACTTGCCGATGATGCCGCAGAGGACATGGCTAGA
TCTACGGAGAATGTAGCGGCTGCGGGAACGGCACAAACCTGGCCGGCAGC
CCCGGAGGTCATCGGCGCGATGCCTCAAGTGGGAGAAGCGCAGCAGGCGA
CGGCAATGTCCGAAGAGACTACGGCCATCGGAGACGGCAGCAAGATACAC
GACCACGACACTCAGAGGGGTAACGCTGCGGCGACGCTCCGGCAGCGTGA
GCTTTGGCCAACGCTCCGAGAGGCAGACGAAATACACGACCACGACACTC
AGAGGGGTAACGCTGCGGCGACGCTCCGGCAGCGTGAGCTTTGGCCAACG
CTCCGAGAGGCAGACGAA
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