mRNA_L-elsbetiae_contig7939.16906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7939.16906.1
Unique NamemRNA_L-elsbetiae_contig7939.16906.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7939.16906.1 vs. uniprot
Match: A0A6H5JWK0_9PHAE (FtsJ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.360e-21
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = -1 
Query:  136 IVSDMNAEPTVVADVLLAAMAAGLARPGAVLVATFKDFCGRHKKMRDEVVSAVARLQAGTA 318
            +VSDMNAEP VVADVLL+AM+AGLARPGA+LVATFKDFCGR K+M+DEV  AV RL+ GTA
Sbjct:  172 VVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVAVAVERLRVGTA 232
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BLAST of mRNA_L-elsbetiae_contig7939.16906.1 vs. uniprot
Match: D8LMA3_ECTSI (FtsJ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.000e-20
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = -1 
Query:  139 IVSDMNAEPTVVADVLLAAMAAGLARPGAVLVATFKDFCGRHKKMRDEVVSAVARLQAGT 318
            +VSDMNAEP VVADVLL+AM+AGLARPGA+LVATFKDFCGR K+M+DEV  AV RL+ GT
Sbjct:  295 VVSDMNAEPAVVADVLLSAMSAGLARPGALLVATFKDFCGRRKRMKDEVALAVERLRVGT 354
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7939.16906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWK0_9PHAE5.360e-2178.69FtsJ domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMA3_ECTSI5.000e-2078.33FtsJ domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7939contigL-elsbetiae_contig7939:7211..7529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.6175692-CDS-L-elsbetiae_contig7939:7210..75281622816878.6175692-CDS-L-elsbetiae_contig7939:7210..7528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7939 7211..7528 +
1691683881.8866003-CDS-L-elsbetiae_contig7939:7210..75281691683881.8866003-CDS-L-elsbetiae_contig7939:7210..7528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7939 7211..7528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7939.16906.1prot_L-elsbetiae_contig7939.16906.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7939 7211..7528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7939.16906.1

>prot_L-elsbetiae_contig7939.16906.1 ID=prot_L-elsbetiae_contig7939.16906.1|Name=mRNA_L-elsbetiae_contig7939.16906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
QGSLVSTTGGASGTTGLPDPLSAHNATTATLFVAQPSRGGGGGGSGGSGL
QPRHRRDNLVAHLLVPAAEVLERGHQHRPRPGQPRRHRRQENIRDHRRLG
VHVGHD
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mRNA from alignment at L-elsbetiae_contig7939:7211..7529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7939.16906.1 ID=mRNA_L-elsbetiae_contig7939.16906.1|Name=mRNA_L-elsbetiae_contig7939.16906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=319bp|location=Sequence derived from alignment at L-elsbetiae_contig7939:7211..7529+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGGCAGCCTCGTTTCTACCACCGGCGGAGCCAGCGGGACCACCGGCCT
CCCCGACCCCCTCAGCGCTCACAACGCCACCACCGCCACGCTCTTCGTCG
CCCAGCCCTCCCGCGGCGGCGGCGGCGGCGGTTCCGGCGGTTCCGGCCTG
CAGCCGCGCCACCGCCGAGACAACCTCGTCGCGCATCTTCTTGTGCCGGC
CGCAGAAGTCCTTGAACGTGGCCACCAGCACCGCCCCCGGCCTGGCCAGC
CCCGCCGCCATCGCCGCCAGGAGAACATCCGCGACCACCGTCGGCTCGGC
GTTCATGTCGGACACGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7939:7211..7529+

>mRNA_L-elsbetiae_contig7939.16906.1 ID=mRNA_L-elsbetiae_contig7939.16906.1|Name=mRNA_L-elsbetiae_contig7939.16906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig7939:7211..7529+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGGCAGCCTCGTTTCTACCACCGGCGGAGCCAGCGGGACCACCGGCCT
CCCCGACCCCCTCAGCGCTCACAACGCCACCACCGCCACGCTCTTCGTCG
CCCAGCCCTCCCGCGGCGGCGGCGGCGGCGGTTCCGGCGGTTCCGGCCTG
CAGCCGCGCCACCGCCGAGACAACCTCGTCGCGCATCTTCTTGTGCCGGC
CGCAGAAGTCCTTGAACGTGGCCACCAGCACCGCCCCCGGCCTGGCCAGC
CCCGCCGCCATCGCCGCCAGGAGAACATCCGCGACCACCGTCGGCTCGGC
GTTCATGTCGGACACGATCAAGGCAGCCTCGTTTCTACCACCGGCGGAGC
CAGCGGGACCACCGGCCTCCCCGACCCCCTCAGCGCTCACAACGCCACCA
CCGCCACGCTCTTCGTCGCCCAGCCCTCCCGCGGCGGCGGCGGCGGCGGT
TCCGGCGGTTCCGGCCTGCAGCCGCGCCACCGCCGAGACAACCTCGTCGC
GCATCTTCTTGTGCCGGCCGCAGAAGTCCTTGAACGTGGCCACCAGCACC
GCCCCCGGCCTGGCCAGCCCCGCCGCCATCGCCGCCAGGAGAACATCCGC
GACCACCGTCGGCTCGGCGTTCATGTCGGACACGAT
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