mRNA_L-elsbetiae_contig7938.16905.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7938.16905.1
Unique NamemRNA_L-elsbetiae_contig7938.16905.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7938.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7938contigL-elsbetiae_contig7938:4652..6981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-22_000280.1
Exons2
Model size421
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7938.16905.1prot_L-elsbetiae_contig7938.16905.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7938 4676..6981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.5569391-UTR-L-elsbetiae_contig7938:4651..46751622816878.5569391-UTR-L-elsbetiae_contig7938:4651..4675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7938 4652..4675 +
1691683881.8363793-UTR-L-elsbetiae_contig7938:4651..46751691683881.8363793-UTR-L-elsbetiae_contig7938:4651..4675Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7938 4652..4675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.5685053-CDS-L-elsbetiae_contig7938:4675..47031622816878.5685053-CDS-L-elsbetiae_contig7938:4675..4703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7938 4676..4703 +
1691683881.8562996-CDS-L-elsbetiae_contig7938:4675..47031691683881.8562996-CDS-L-elsbetiae_contig7938:4675..4703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7938 4676..4703 +
1622816878.580085-CDS-L-elsbetiae_contig7938:6613..69811622816878.580085-CDS-L-elsbetiae_contig7938:6613..6981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7938 6614..6981 +
1691683881.8702576-CDS-L-elsbetiae_contig7938:6613..69811691683881.8702576-CDS-L-elsbetiae_contig7938:6613..6981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7938 6614..6981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7938.16905.1

>prot_L-elsbetiae_contig7938.16905.1 ID=prot_L-elsbetiae_contig7938.16905.1|Name=mRNA_L-elsbetiae_contig7938.16905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MKRSPVFAGARCPGRRSTRRQPAPSTRRKAPPPASISASSGRRLPRRRLL
RAVAPHTTTPTPPRLRLRLCRRPWSWESALVVVVAVAALLAPVAEAAGAA
GRSSSSSSSRGGRSGGSVPWWYPSRDWGMLPS
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mRNA from alignment at L-elsbetiae_contig7938:4652..6981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7938.16905.1 ID=mRNA_L-elsbetiae_contig7938.16905.1|Name=mRNA_L-elsbetiae_contig7938.16905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2330bp|location=Sequence derived from alignment at L-elsbetiae_contig7938:4652..6981+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGCCGACTGGCTGCCCGACGCGATGAAGAGGAGTCCGGTATTCGCAGG
AGGTGAGAAAGGCTCTTAACCTTGTACGCATTAGCTGCGAAATGGCCGCA
GGAAAGCATAAATCGTACACAAACGATTTGTGAAGAAAAAAAAAGGTCTC
GCTCTTTTGGTTCCGCCGACCCTGCCGTCAACCAACACACCTCGACACAA
GCCGGGAGCATTGATGTTTGTATTATGTTTTACAGTTTCGGCCAATGAAG
GCTATTGATGTGCGAACCGAGAAAAACGAGCCGATGTACATGCATTGGTG
GCAGTTCCGGAATGTTCACTTGAATGACTGACAGTTCGGCACGCAGCAGT
AGTATGTAGACCGTGTACCAGGTGACACAAGATACCACCACACCCCCCTA
GACAATTTTTCAAAGCTCGATTCCTCCCCAGCAAGAGGAGTGCCAGTGCC
AAAAGGGGTGCGTAGTATTGGAAAGGTCTGGTCGAGGACTGTCCGAAAAT
ATGTCATTTGATGCTGGCACCTTATTCGTTAGAGGAGAGTAATGGAGCTC
TAAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGCACACAC
ACCCCTCGATGAACTGCACTACTAACTACGCAGGAAATTGACAGGAATTG
ACCTCATCACGTGTTGGCAAGAGAATCGAAGAAGGAACCTCCCCACACAA
GAAGCCGTGGTCTCGGTCTCTGTGTGGTGGGCATCATTGTGTAGCGGACA
TGGGGCGGTACTGGGTGGAGAGATCGGAACGGTTTTGTAATGTGAAGAGA
ACAACAACAACAACAACAACAACGGGACTGTCAACAATAACAACGGGACT
GTCAACAATAACATACATATTTAGTATGCAGGTACGAGTGCTCAGTCTGG
GCAGTAAACACAGCAGCACGTAGTAAGGTAGGCACACAACAGCTTGTCTT
TGAAACGGAAAACGGCGTCAACGTACACCCATATTTACTGCTGTTTCAAT
ATTGCAATATTAATATTGTAGGAGTAGGTATTTACTGCCTCGCGTGTGTG
TGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGATAGTCCCCCCAAGTGG
AGACGTGTACTACACCTTGCGGTGTACTTAGAGGTACTTTGCAGTGCATT
TGTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGAGGTGAACACT
GGGGCTTTTTCTTCTTTTTCATTTTCTTTTTTTGCCCCACCTTCCTCCTG
CGGTTCTTGCCTTGGGTTTTATCGCGAAAAGGGTTCAGCTGCCTCGCGTG
TGCAATGTTTTTTTTGTTGCGATTTGGGCAACGATGGCGTCATAATGATG
GATATGCGTCAGATGTGAGTGCTTCTGTAAGTTGGCATCGAGCGCAAAGG
GCAGCGGGCGGGGCTTCGCCAGTGACAGCGGGGGTTTCAATCTTGCACAT
GACAGATGTATCTACGTAGACACTACACAAACTCTACAATGCAAAAGCCG
CGTACAGCAGTACCCAGTAAATTACATGGAGATAAATACAGCAAGCAGCA
AGCAGTATGCAGCCGTGGTGGTTCTCCGCTTCTGTCGCCTCAAACGCTCG
CGTCAAGTGTTTTGCAAGTGTTTTGGAGTGGGTATACTGATGGAGATACT
GGACAATAGAGAGATCGGAACGGTTTTTACTGTGAAGACAACAACGACCA
CAGCAACTCGCGCGAGCACAAAAGTTAAGGCTGGCCTCCGCCACGTGGCT
AGGGAGAAAAAGGCCGAACCCCAGAAAAGGCGAAGAGGCATGTTGTGTTT
TGTGGTCCGCGGTAGACGTCTTACGCAGCCCACCCCACCGCCTCCTCAAA
ACGCTTAGTACATACATAGTAGTGGCTTCCCAAAAAACAAGTTGTACCTC
GGAAGTATCATCTGGTCCCTGTCTCTTACTCTCTATCCCCCCCCCCCCCC
CCCCCTCCCAAGCTCGGTGCCCCGGAAGGCGGAGCACACGCCGACAGCCC
GCCCCCAGCACGCGAAGGAAAGCACCGCCACCAGCATCCATATCAGCGTC
GTCGGGACGGCGACTTCCCCGGCGGCGCCTCCTCCGCGCCGTCGCCCCCC
ACACAACAACACCCACGCCGCCGCGTCTTCGCCTCCGCCTCTGCCGCCGG
CCGTGGTCGTGGGAGTCGGCTCTCGTCGTAGTGGTCGCCGTCGCGGCGCT
GCTCGCGCCGGTCGCGGAGGCGGCCGGAGCAGCCGGTCGAAGCAGCAGCA
GCAGCAGCAGCAGGGGCGGGCGCAGCGGGGGCTCCGTGCCATGGTGGTAC
CCATCGAGAGACTGGGGTATGCTGCCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7938:4652..6981+

>mRNA_L-elsbetiae_contig7938.16905.1 ID=mRNA_L-elsbetiae_contig7938.16905.1|Name=mRNA_L-elsbetiae_contig7938.16905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig7938:4652..6981+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAGGAGTCCGGTATTCGCAGGAGATGAAGAGGAGTCCGGTATTCG
CAGGAGCTCGGTGCCCCGGAAGGCGGAGCACACGCCGACAGCCCGCCCCC
AGCACGCGAAGGAAAGCACCGCCACCAGCATCCATATCAGCGTCGTCGGG
ACGGCGACTTCCCCGGCGGCGCCTCCTCCGCGCCGTCGCCCCCCACACAA
CAACACCCACGCCGCCGCGTCTTCGCCTCCGCCTCTGCCGCCGGCCGTGG
TCGTGGGAGTCGGCTCTCGTCGTAGTGGTCGCCGTCGCGGCGCTGCTCGC
GCCGGTCGCGGAGGCGGCCGGAGCAGCCGGTCGAAGCAGCAGCAGCAGCA
GCAGCAGGGGCGGGCGCAGCGGGGGCTCCGTGCCATGGTGGTACCCATCG
AGAGACTGGGGTATGCTGCCCTCCCTCGGTGCCCCGGAAGGCGGAGCACA
CGCCGACAGCCCGCCCCCAGCACGCGAAGGAAAGCACCGCCACCAGCATC
CATATCAGCGTCGTCGGGACGGCGACTTCCCCGGCGGCGCCTCCTCCGCG
CCGTCGCCCCCCACACAACAACACCCACGCCGCCGCGTCTTCGCCTCCGC
CTCTGCCGCCGGCCGTGGTCGTGGGAGTCGGCTCTCGTCGTAGTGGTCGC
CGTCGCGGCGCTGCTCGCGCCGGTCGCGGAGGCGGCCGGAGCAGCCGGTC
GAAGCAGCAGCAGCAGCAGCAGCAGGGGCGGGCGCAGCGGGGGCTCCGTG
CCATGGTGGTACCCATCGAGAGACTGGGGTATGCTGCCCTCC
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