mRNA_L-elsbetiae_contig7937.16904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7937.16904.1
Unique NamemRNA_L-elsbetiae_contig7937.16904.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: D7G8B4_ECTSI (Pescadillo homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8B4_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 9.990e-47
Identity = 103/138 (74.64%), Postives = 110/138 (79.71%), Query Frame = 1 
Query:    1 RKRREYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRGLVSGEEEE-EKGAEGR--VVDVVPGVATDVSGP--------RKDGEEEEQE--EEAFAKDLDRERAGT 375
            RKRREY+QPQWVLDSLNARVLLPVARYAPG+ALPPHLSPFVDDA+EGYVPAYREELDKLRSAAEARR+RG  S   EE  + AEG   V+DVVPGVATDVS          R D E EE    EEAFAKDL+RERAGT
Sbjct:  488 RKRREYLQPQWVLDSLNARVLLPVARYAPGAALPPHLSPFVDDASEGYVPAYREELDKLRSAAEARRKRGGGSKPAEEGTENAEGEDDVLDVVPGVATDVSSSATAAGTSSRSDDEAEEDGDGEEAFAKDLERERAGT 625
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A7S2MSI3_9STRA (Pescadillo homolog n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSI3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.510e-24
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   13 EYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAA 189
            +YVQPQWV+DS+NA  LLPV RY PG+ALPPHLSPFVDDA EGY+PAYREELDKL+SAA
Sbjct:  462 DYVQPQWVVDSINAMCLLPVMRYVPGAALPPHLSPFVDDAKEGYIPAYREELDKLQSAA 520
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A024UCU6_9STRA (Pescadillo homolog n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCU6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.630e-23
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEA 195
            REYVQPQWV DS+N +VLLP+A+Y PG++LPPHLSPFVDDAAEGYVP YR++LDKL+SA +A
Sbjct:  442 REYVQPQWVFDSVNNQVLLPLAKYVPGASLPPHLSPFVDDAAEGYVPDYRKQLDKLKSALDA 503
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A8K1CSW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSW7_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 4.260e-23
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRGLVSGEEEEE 237
            REY QPQWV DS+N  V+LPVARYAPG+ LPPHLSPFVDDAAEGY P YR++L+KL+SAA+  R+ G    + EE+
Sbjct:  447 REYTQPQWVFDSVNNGVILPVARYAPGADLPPHLSPFVDDAAEGYTPEYRKQLNKLKSAAQVIREVGAEDVDMEED 522
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A6G0XD43_9STRA (Pescadillo homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD43_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.690e-23
Identity = 44/63 (69.84%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEAR 198
            REY+QPQW+ DS+N ++LLP+ +Y PGS+LPPHLSPFVDDAAEGYVP YR++LDKL+SA +A+
Sbjct:  437 REYIQPQWIFDSINNQILLPLDKYVPGSSLPPHLSPFVDDAAEGYVPDYRKQLDKLKSALDAK 499
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A3M6VIF7_9STRA (Pescadillo homolog n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIF7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.860e-23
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRGLVSGEEEEEKGAE 249
            REYVQPQWV DS+N  +LLP+ARY PG+ LPPHLSPFVDD  EGY P YR+EL+KL+SA +   + G    E+ EE+ AE
Sbjct:  449 REYVQPQWVFDSVNNGILLPLARYVPGAELPPHLSPFVDDGQEGYTPEYRKELEKLKSAKQVLHEVGAAGVEDSEEEDAE 528
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A3R7KF99_9STRA (Pescadillo homolog n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KF99_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.070e-22
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRGLVSGE 225
            REYVQPQWV DS+N  VLLP+ARY PG+ LPPHLSPFV+D  EGY P YR+EL+KL+SA++  R+ G V GE
Sbjct:  422 REYVQPQWVFDSVNNGVLLPLARYVPGAELPPHLSPFVNDDHEGYTPEYRKELEKLKSASQVLREVGAVGGE 493
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: W2PLE3_PHYPN (Pescadillo homolog n=5 Tax=Phytophthora TaxID=4783 RepID=W2PLE3_PHYPN)

HSP 1 Score: 101 bits (251), Expect = 2.010e-22
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRGLVSGEE 228
            REYVQPQWV DS+N  +LLP+ RY PG+ LPPHLSPFV+D  EGY P YR+ELDKL+SA++  R+ G V  EE
Sbjct:  441 REYVQPQWVFDSVNNGILLPLTRYVPGAELPPHLSPFVNDQQEGYTPEYRKELDKLKSASQVLREVGAVGDEE 513
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: A0A2D4C588_PYTIN (Pescadillo-like protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C588_PYTIN)

HSP 1 Score: 101 bits (251), Expect = 2.090e-22
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRG 210
            REY+QPQWV DS+N  + LP+ARYAPG+ LPPHLSPFVDDAAEGYVP YR+EL+ L+SAA+  R+ G
Sbjct:  409 REYIQPQWVFDSVNNGIRLPIARYAPGADLPPHLSPFVDDAAEGYVPDYRKELNXLKSAAQVLREIG 475
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BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Match: M4BP54_HYAAE (Pescadillo homolog n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BP54_HYAAE)

HSP 1 Score: 100 bits (250), Expect = 2.780e-22
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   10 REYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVPAYREELDKLRSAAEARRQRGLVSGE 225
            REYVQPQWV DS+N  +LLP+ARY PG+ LPPHLSPFV+D  EGY P YR+ELDKL+SA +  R+ G V  E
Sbjct:  458 REYVQPQWVFDSVNNGILLPLARYLPGAELPPHLSPFVNDGQEGYTPEYRKELDKLKSAVQVLREVGAVGDE 529
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7937.16904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8B4_ECTSI9.990e-4774.64Pescadillo homolog n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2MSI3_9STRA6.510e-2481.36Pescadillo homolog n=1 Tax=Dictyocha speculum TaxI... [more]
A0A024UCU6_9STRA1.630e-2375.81Pescadillo homolog n=2 Tax=Aphanomyces invadans Ta... [more]
A0A8K1CSW7_PYTOL4.260e-2365.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XD43_9STRA5.690e-2369.84Pescadillo homolog n=1 Tax=Aphanomyces euteiches T... [more]
A0A3M6VIF7_9STRA5.860e-2361.25Pescadillo homolog n=2 Tax=Peronospora effusa TaxI... [more]
A0A3R7KF99_9STRA1.070e-2266.67Pescadillo homolog n=4 Tax=Phytophthora kernoviae ... [more]
W2PLE3_PHYPN2.010e-2264.38Pescadillo homolog n=5 Tax=Phytophthora TaxID=4783... [more]
A0A2D4C588_PYTIN2.090e-2270.15Pescadillo-like protein (Fragment) n=1 Tax=Pythium... [more]
M4BP54_HYAAE2.780e-2265.28Pescadillo homolog n=1 Tax=Hyaloperonospora arabid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7937contigL-elsbetiae_contig7937:5709..7217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue2.1e-40
Seed eggNOG ortholog2880.D7G8B4
Preferred nameNOP7
KEGG koko:K04560,ko:K14843
KEGG Pathwayko04130,ko04721,ko04911,ko05031,map04130,map04721,map04911,map05031
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0000793,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0006997,GO:0007000,GO:0007049,GO:0007154,GO:0007275,GO:0007399,GO:0007417,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009267,GO:0009405,GO:0009605,GO:0009987,GO:0009991,GO:0010001,GO:0010467,GO:0010468,GO:0010570,GO:0010876,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019915,GO:0022008,GO:0022402,GO:0022613,GO:0030154,GO:0030447,GO:0030490,GO:0030684,GO:0030686,GO:0030687,GO:0031016,GO:0031017,GO:0031323,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0035272,GO:0035690,GO:0036170,GO:0040007,GO:0040008,GO:0042063,GO:0042221,GO:0042254,GO:0042273,GO:0042274,GO:0042493,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044786,GO:0045926,GO:0046483,GO:0048513,GO:0048519,GO:0048583,GO:0048585,GO:0048709,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051235,GO:0051252,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060258,GO:0065007,GO:0065008,GO:0070013,GO:0070545,GO:0070727,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090069,GO:0090304,GO:0097159,GO:1900428,GO:1900429,GO:1900434,GO:1900435,GO:1901360,GO:1901363,GO:1901576,GO:1990904,GO:2000232
EggNOG free text desc.Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome
EggNOG OGsCOG5163@1,KOG2481@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Exons2
Model size381
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.5173962-CDS-L-elsbetiae_contig7937:5709..58621622816878.5173962-CDS-L-elsbetiae_contig7937:5709..5862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 5710..5862 -
1691683881.8087728-CDS-L-elsbetiae_contig7937:5709..58621691683881.8087728-CDS-L-elsbetiae_contig7937:5709..5862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 5710..5862 -
1622816878.5277846-CDS-L-elsbetiae_contig7937:6992..72171622816878.5277846-CDS-L-elsbetiae_contig7937:6992..7217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 6993..7217 -
1691683881.8239408-CDS-L-elsbetiae_contig7937:6992..72171691683881.8239408-CDS-L-elsbetiae_contig7937:6992..7217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 6993..7217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7937.16904.1prot_L-elsbetiae_contig7937.16904.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7937 5710..7217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7937.16904.1

>prot_L-elsbetiae_contig7937.16904.1 ID=prot_L-elsbetiae_contig7937.16904.1|Name=mRNA_L-elsbetiae_contig7937.16904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
RKRREYVQPQWVLDSLNARVLLPVARYAPGSALPPHLSPFVDDAAEGYVP
AYREELDKLRSAAEARRQRGLVSGEEEEEKGAEGRVVDVVPGVATDVSGP
RKDGEEEEQEEEAFAKDLDRERAGTT
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mRNA from alignment at L-elsbetiae_contig7937:5709..7217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7937.16904.1 ID=mRNA_L-elsbetiae_contig7937.16904.1|Name=mRNA_L-elsbetiae_contig7937.16904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1509bp|location=Sequence derived from alignment at L-elsbetiae_contig7937:5709..7217- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGCGCCGTGAGTACGTGCAGCCGCAGTGGGTGCTTGACTCCCTGAA
CGCGCGCGTGCTGCTGCCGGTGGCGCGGTACGCCCCCGGCTCCGCCCTGC
CGCCGCACCTGTCCCCGTTCGTGGACGACGCGGCCGAGGGCTACGTGCCG
GCGTACCGGGAGGAGCTGGACAAGCTGAGGTCGGCGGCGGAGGCCCGGAG
GCAAAGAGGCCTTGTGTCCGGGGAGGTGTGTGTGTGTGGGTGATACTCGT
GTGTGTGTGTGCGTGTGTGTGTTGTGTGATTGTTAGGGAATAAATATATG
CGTTGTGCCCTGGGAGGTGTGTGTGTGTGTGTGTGTGTGTCGGAGACAGA
GATAGAGAGAAAGAGAAAACGTCGCGGTTACCCGGGCCCGTGCCGACGAC
AGCGCACCGCGCCTTGTGCCTGCGGGGTGCTGTTGCCAGACCGGCGGCTT
GCCTAGTCTGCCCCGCGGCGACACGAGAGATGGGAGACCAAGGGGAGCGC
GATATCGTATCGCCCTGTGTGACCGCTCATGACCCATGAGCGAGGTCATG
CATGTGTGGACACGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTG
GCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTTGCGGTGTACTTA
GAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACTAGAACCAACCGG
GGTCACACAGGAGGGGGTGAGCACTGGGACTTTTTTTTCTTTTTTCTTTT
CTTTTTTTGCCCCATCTTCCTTCCTCCTGCGGTTCTTGCCTTCATTTTTA
TCGCGAGAAGGGTTCAGCAGCTGTCTCTTTCCCTCGTCAACGTGATTACG
TCGAAGTTTGGTACTGACGAGCTTTTCAGCTTTTATCGCTTTACATACTC
TGCTGCCCACGAATTACTAAATAGCTTTGTTTTGAACTACTGCGTTCGTC
TCGCCCTGTGACCCATGAGTAAAGTTACATGTATCTACTTTCGTGATACT
CTGCTACCCACGAAATTACTACCTACATAGCTTTGTTTTGAATTACAGCG
TTCGTATCGCCCTGTGTGGCCCATGAGGTAAGGCCACATGTATCTTTGAT
GTTGGTACTCTGCTGCCCACGAAATGCACCTTTTATGTTGATACTCTGCT
GCCCACGAAATGCATCTTTTATGCTGATACTCTGCTGCGCACGAAATGCA
TCTTTTAGGCTGCTACTCTGCTGCCCACGAAATGTATCTTTTATGTTGAT
TCTCTGCTGCCCACGAAATCATCACCTACTTTATGTAGCTTTGTTTGGAA
TTACTGCGTTATCGCCTGTCGCTCACTTACGCACGTCTTGCTCCCTGTCT
TGCAGGAGGAGGAGGAAAAGGGTGCGGAGGGCCGAGTTGTGGACGTAGTT
CCTGGGGTCGCCACCGACGTTTCCGGCCCCCGCAAAGACGGCGAGGAGGA
GGAGCAAGAGGAGGAGGCGTTCGCCAAGGACCTCGACCGGGAGAGGGCGG
GCACGACGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7937:5709..7217-

>mRNA_L-elsbetiae_contig7937.16904.1 ID=mRNA_L-elsbetiae_contig7937.16904.1|Name=mRNA_L-elsbetiae_contig7937.16904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig7937:5709..7217- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGCGCCGTGAGTACGTGCAGCCGCAGTGGGTGCTTGACTCCCTGAA
CGCGCGCGTGCTGCTGCCGGTGGCGCGGTACGCCCCCGGCTCCGCCCTGC
CGCCGCACCTGTCCCCGTTCGTGGACGACGCGGCCGAGGGCTACGTGCCG
GCGTACCGGGAGGAGCTGGACAAGCTGAGGTCGGCGGCGGAGGCCCGGAG
GCAAAGAGGCCTTGTGTCCGGGGAGCGCAAGCGCCGTGAGTACGTGCAGC
CGCAGTGGGTGCTTGACTCCCTGAACGCGCGCGTGCTGCTGCCGGTGGCG
CGGTACGCCCCCGGCTCCGCCCTGCCGCCGCACCTGTCCCCGTTCGTGGA
CGACGCGGCCGAGGGCTACGTGCCGGCGTACCGGGAGGAGCTGGACAAGC
TGAGGTCGGCGGCGGAGGCCCGGAGGCAAAGAGGCCTTGTGTCCGGGGAG
GAGGAGGAGGAAAAGGGTGCGGAGGGCCGAGTTGTGGACGTAGTTCCTGG
GGTCGCCACCGACGTTTCCGGCCCCCGCAAAGACGGCGAGGAGGAGGAGC
AAGAGGAGGAGGCGTTCGCCAAGGACCTCGACCGGGAGAGGGCGGGCACG
ACGGAGGAGGAGGAAAAGGGTGCGGAGGGCCGAGTTGTGGACGTAGTTCC
TGGGGTCGCCACCGACGTTTCCGGCCCCCGCAAAGACGGCGAGGAGGAGG
AGCAAGAGGAGGAGGCGTTCGCCAAGGACCTCGACCGGGAGAGGGCGGGC
ACGACG
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