mRNA_L-elsbetiae_contig7937.16903.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7937.16903.1
Unique NamemRNA_L-elsbetiae_contig7937.16903.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7937.16903.1 vs. uniprot
Match: D7G8B4_ECTSI (Pescadillo homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8B4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:   76 EMSRNMMSKKAKRLYGRMQHGLSKRREEVDRLKAKRKNLEAKYDAAPGMA 225
            EMSRNMMSKKAKRLYGRMQHGLSKRREEV+RLKAKRK LEA+YDA  GMA
Sbjct:  684 EMSRNMMSKKAKRLYGRMQHGLSKRREEVERLKAKRKKLEAQYDAPDGMA 733
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BLAST of mRNA_L-elsbetiae_contig7937.16903.1 vs. uniprot
Match: A0A835Z1N0_9STRA (Pescadillo homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.310e-10
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   76 EMSRNMMSKKAKRLYGRMQHGLSKRREEVDRLKAKRKNLEAKYDAAP 216
            E+S+ MMSKKAKRLYGRMQHG+ K+RE +DRLKAKRK +E++YD  P
Sbjct:  683 ELSKIMMSKKAKRLYGRMQHGIGKKRETIDRLKAKRKAIESQYDKVP 729
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BLAST of mRNA_L-elsbetiae_contig7937.16903.1 vs. uniprot
Match: F0WEQ7_9STRA (Pescadillo homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEQ7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.880e-5
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   76 EMSRNMMSKKAKRLYGRMQHGLSKRREEVDRLKAKRKNLEAKYDA 210
            +M++NMMSKKAKRLY RMQ+GL K+++++ +L+AKR  L+ + DA
Sbjct:  616 DMAKNMMSKKAKRLYDRMQYGLGKKQDKIQQLEAKRARLQQQTDA 660
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BLAST of mRNA_L-elsbetiae_contig7937.16903.1 vs. uniprot
Match: A0A7S1Y177_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y177_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.240e-5
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   76 EMSRNMMSKKAKRLYGRMQHGLSKRREEVDRLKAKRKNLEA 198
            E++++MM KKAKRLY RMQHG  +R+++VDRL+ KR+ +EA
Sbjct:  161 ELAKSMMGKKAKRLYERMQHGNQRRQDKVDRLREKRRKIEA 201
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7937.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8B4_ECTSI1.120e-1690.00Pescadillo homolog n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z1N0_9STRA1.310e-1070.21Pescadillo homolog n=1 Tax=Tribonema minus TaxID=3... [more]
F0WEQ7_9STRA5.880e-555.56Pescadillo homolog n=1 Tax=Albugo laibachii Nc14 T... [more]
A0A7S1Y177_9STRA8.240e-558.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7937contigL-elsbetiae_contig7937:3160..5604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7G8B4
Preferred nameNOP7
KEGG koko:K04560,ko:K14843
KEGG Pathwayko04130,ko04721,ko04911,ko05031,map04130,map04721,map04911,map05031
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0000793,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0006997,GO:0007000,GO:0007049,GO:0007154,GO:0007275,GO:0007399,GO:0007417,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009267,GO:0009405,GO:0009605,GO:0009987,GO:0009991,GO:0010001,GO:0010467,GO:0010468,GO:0010570,GO:0010876,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019915,GO:0022008,GO:0022402,GO:0022613,GO:0030154,GO:0030447,GO:0030490,GO:0030684,GO:0030686,GO:0030687,GO:0031016,GO:0031017,GO:0031323,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0035272,GO:0035690,GO:0036170,GO:0040007,GO:0040008,GO:0042063,GO:0042221,GO:0042254,GO:0042273,GO:0042274,GO:0042493,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044786,GO:0045926,GO:0046483,GO:0048513,GO:0048519,GO:0048583,GO:0048585,GO:0048709,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051235,GO:0051252,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060258,GO:0065007,GO:0065008,GO:0070013,GO:0070545,GO:0070727,GO:0070887,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090069,GO:0090304,GO:0097159,GO:1900428,GO:1900429,GO:1900434,GO:1900435,GO:1901360,GO:1901363,GO:1901576,GO:1990904,GO:2000232
EggNOG free text desc.Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome
EggNOG OGsCOG5163@1,KOG2481@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Exons2
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.4691417-CDS-L-elsbetiae_contig7937:3159..34381622816878.4691417-CDS-L-elsbetiae_contig7937:3159..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 3160..3438 -
1691683881.778955-CDS-L-elsbetiae_contig7937:3159..34381691683881.778955-CDS-L-elsbetiae_contig7937:3159..3438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 3160..3438 -
1622816878.4805212-CDS-L-elsbetiae_contig7937:5517..56041622816878.4805212-CDS-L-elsbetiae_contig7937:5517..5604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 5518..5604 -
1691683881.7967947-CDS-L-elsbetiae_contig7937:5517..56041691683881.7967947-CDS-L-elsbetiae_contig7937:5517..5604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7937 5518..5604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7937.16903.1prot_L-elsbetiae_contig7937.16903.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7937 3160..5604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7937.16903.1

>prot_L-elsbetiae_contig7937.16903.1 ID=prot_L-elsbetiae_contig7937.16903.1|Name=mRNA_L-elsbetiae_contig7937.16903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
GDGEEGGAEEVAPAEEKQTEEQEHHEMSRNMMSKKAKRLYGRMQHGLSKR
REEVDRLKAKRKNLEAKYDAAPGMAKKSKTKTSSKKNKKRRLSAASAAGE
DYVCSHIRETQEEAFVCCRRGG
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mRNA from alignment at L-elsbetiae_contig7937:3160..5604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7937.16903.1 ID=mRNA_L-elsbetiae_contig7937.16903.1|Name=mRNA_L-elsbetiae_contig7937.16903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2445bp|location=Sequence derived from alignment at L-elsbetiae_contig7937:3160..5604- (Laminarionema elsbetiae ELsaHSoW15)
GGGGACGGGGAAGAGGGCGGGGCTGAAGAAGTCGCACCCGCGGAGGAGAA
GCAAACGGAGGAGCAGGAGCACCACGAGATGTCGAGGGTAAGAGACGAAG
AGTGTGACATTATATTACTCTCTCTGTGTGTGGTTGTTGAAGCGAGTGTG
CGCACTGCAATGAATAGCGGTTTATTGTAAGCTTGGCTGTTGGGAGAAGA
GGAGGAGGTTTTTGCAGGAGGCGTGAGTAGGCTAGATCATGTGTTTTTTA
TGCTTTTGCTGCTGCTGCTGTTTCCGCTGCGGCTCGTGTGGTCCTTGTTG
CGGTGTGTTCCCCATGATGCCGTCGATGAAGCACGTGCAGCCAGAGCAGG
CTCGGATGTTGTAGCCTGGAGGTGATCCACCCCAGTTAACGCTGCGTACC
ACTACCGAAAATTCGTGCTCTCTTGCGCCAGTTTACAGGCTTCGATAAAA
TCGGGCCACACACGAGAGGGACCCTCTTTTTTTCGTTTGTTTTTCCTTGT
GGAAGTAAGCGTATTTCTCCACAACCAGGAGGGTACCACTGCGGAAAAGG
GTGGTCTTCGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGTATCAGTTAG
TGTTCGCACCCTCCTGGTTGTGGAGAAATACGCTTTAGAAAAATGCTAAC
ACGGGGGTGCGAACCTTCGCATGATGACGGTATACCTACATGGGAAAATA
ATGCTGACCGCGCTGCACCAGGTTATCCATCCGCCTGCCTGTTTTTTTCG
TTTGGATGTTGATCTGTGGCCGCCGTCTGGTTTTCTGTTGGGGTCGTGTG
TGTGCCGTGCCGTGCAGCCACGAACAAGCGACATCGCTATCCGATTGATT
ACATACGCCAGTCACATCAAGACACGGCGGTCCACGAAAGAAGAGAGCGC
GCTTGGACACCCAGGGGTCGAGAGAACATGAAACACACACACACACACAC
GCACAGCACAAACAGCGTGTAATTCATTGCTGCATCCACCCCCGTCCGCT
TGACCCCGCCGCCGCAGCTCTGCTGCACACACCGGCCGTCTTTTATTCAC
GTCGTGCCTGCTTTTGTAGATTTTGTTCTTGCCCTCATGAACAACCCTCC
CTCACCAGATCGCATGAGCATCATGACATACCGTAGGTGACACAACTACC
ACATCCCCTGGACCGACTTTTAGAGCTCCATTACTCCGTAATGAAGAAGG
TGCCAGCACCAAACGAAACATTTTCGGACAGCCCTCGGCTAGATCTTTCC
AACGCTACCCTTTTTGGCACTGGCACTCCTCCTGCTGGGGAGGAATCGAG
CTTTGAAAATACGCCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTACA
TACCGTGGTCCCTTCTGAGTTCCCCACGGTGGGGGGGGGGGGGGGGGGAA
AAACGTCCTTGCCGTTTTGTACCACNNNNNNNNNNCGGGGGGGGGGTGTG
TTCTCGTGGCCCACCCGTCGACGCCCCCGTGGCCCCTCGTGCGCTCCCGG
GGGGGGGGGGGGGGGGGGGGGGGACAAACGTCCTTGCCGATTTTCTCCAC
AACCTAGAGGGTACGACGAACGGAAGCATTACATGTGGAAATATCTCGGC
GAGATCTTTCCAATGGCGCATATCTTGGCACTAGAAACCTTCTCCATTGC
AGAGAAAAATGGCAACGAAGTTCGTTCCCCCTCCCCGGCCCGGGGGGAAC
TCAAAGGGGATTTTTACGGTGTATTGCATGACAACGACAAATCGCACCAA
CCTCGCGCCCACGCCGCATAGACACGCTCATGTATTTTATTGTCGATGTA
TGCACACACCCTGTCGGCACTCTCATTCTCCACGTCCAGAACATGATGCC
CGAAGAAGGCACACGCACAAACAGCGTGTTTGTTGGCTCATTGCTGCATC
CGACCCAAAAGTACGTACACACTGGTTGTCCCTTCACCCGACTACGACCT
GTCTGCATCGTGCTGGGGTTTTTTTCTTGGTGCTGTGAGGAGGAACCCTC
TCGCCAAGTCGCCTATTATGACATCGCACCCCACACCACAGCAGTTTTGT
TGCCAAATCATAATCCATGGTCTAATTTTAACACCCCCCCCCCCAAAAAA
AAACGAACTCTCTCGGGTCACATCCCCAAATTAACATGAAGAATTTGTTC
ATTCCCCTGTCTCCAGAACATGATGTCCAAGAAGGCGAAGCGGCTGTACG
GGCGCATGCAGCACGGCCTCAGCAAGCGCCGCGAGGAGGTGGACCGCCTC
AAGGCCAAGCGGAAGAACCTCGAGGCCAAGTACGACGCCGCTCCGGGCAT
GGCCAAGAAGAGCAAGACCAAGACCAGCAGCAAGAAAAACAAGAAGAGGC
GTTTGTCTGCTGCCTCCGCGGCGGGGGAGGACTACGTATGTAGTCACATA
CGTGAAACACAAGAAGAGGCGTTTGTCTGCTGCCGCCGCGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7937:3160..5604-

>mRNA_L-elsbetiae_contig7937.16903.1 ID=mRNA_L-elsbetiae_contig7937.16903.1|Name=mRNA_L-elsbetiae_contig7937.16903.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig7937:3160..5604- (Laminarionema elsbetiae ELsaHSoW15)
GGGGACGGGGAAGAGGGCGGGGCTGAAGAAGTCGCACCCGCGGAGGAGAA
GCAAACGGAGGAGCAGGAGCACCACGAGATGTCGAGGGGGGACGGGGAAG
AGGGCGGGGCTGAAGAAGTCGCACCCGCGGAGGAGAAGCAAACGGAGGAG
CAGGAGCACCACGAGATGTCGAGGAACATGATGTCCAAGAAGGCGAAGCG
GCTGTACGGGCGCATGCAGCACGGCCTCAGCAAGCGCCGCGAGGAGGTGG
ACCGCCTCAAGGCCAAGCGGAAGAACCTCGAGGCCAAGTACGACGCCGCT
CCGGGCATGGCCAAGAAGAGCAAGACCAAGACCAGCAGCAAGAAAAACAA
GAAGAGGCGTTTGTCTGCTGCCTCCGCGGCGGGGGAGGACTACGTATGTA
GTCACATACGTGAAACACAAGAAGAGGCGTTTGTCTGCTGCCGCCGCGGC
GGGAACATGATGTCCAAGAAGGCGAAGCGGCTGTACGGGCGCATGCAGCA
CGGCCTCAGCAAGCGCCGCGAGGAGGTGGACCGCCTCAAGGCCAAGCGGA
AGAACCTCGAGGCCAAGTACGACGCCGCTCCGGGCATGGCCAAGAAGAGC
AAGACCAAGACCAGCAGCAAGAAAAACAAGAAGAGGCGTTTGTCTGCTGC
CTCCGCGGCGGGGGAGGACTACGTATGTAGTCACATACGTGAAACACAAG
AAGAGGCGTTTGTCTGCTGCCGCCGCGGCGGG
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