mRNA_L-elsbetiae_contig7936.16902.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7936.16902.1
Unique NamemRNA_L-elsbetiae_contig7936.16902.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A6H5L4S8_9PHAE (SpoU_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4S8_9PHAE)

HSP 1 Score: 356 bits (914), Expect = 1.950e-116
Identity = 183/205 (89.27%), Postives = 192/205 (93.66%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            R+FHKRRTRDDGGK+LAEGHRLVCDLIEGG +P LVI    ALRASPGPRLQAALETL ADVVAVAPAEVVQRCCDTV SQGVVALVERPVLPLP T+QTVL+CDGIQDPGNLGTLVRTAAGLGAD VVLTG+CVDYWAPKTVRASMGASFRLPSLRLESW EV ELM+ARG+RMYAA+GGA LSHFDADWTSPSALVVGAEARG
Sbjct:   80 RSFHKRRTRDDGGKILAEGHRLVCDLIEGGLTPTLVI----ALRASPGPRLQAALETLSADVVAVAPAEVVQRCCDTVTSQGVVALVERPVLPLPPTMQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARG 280          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A835Z4A7_9STRA (tRNA/rRNA methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A7_9STRA)

HSP 1 Score: 238 bits (607), Expect = 2.280e-71
Identity = 118/205 (57.56%), Postives = 155/205 (75.61%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            +T HKR++RD  G+VL EG RLV D ++ G SP LV+VSPEAL +  G  L A L+ L +DVV +A  + V R CDTV+ QGVVA+V RP+LPLP T++  LV DG+ DPGN+GT+VRTAA LG D VV+TG CVD W+PK +RASMGA+FR+PS+   +W E  EL+QARG+ +YAA+GGA+ +H++  W+ PSALVVG+EA G
Sbjct:   30 KTLHKRKSRDSEGRVLVEGCRLVTDALKAGLSPDLVLVSPEALASPGGSALSALLQRLSSDVVCLASGDCVARACDTVSPQGVVAVVARPLLPLPETVRLALVLDGVSDPGNMGTMVRTAAALGVDAVVMTGACVDLWSPKALRASMGAAFRVPSVATGTWRETRELLQARGLALYAADGGAATAHWEVPWSKPSALVVGSEAEG 234          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A7S2B686_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2B686_9EUKA)

HSP 1 Score: 159 bits (403), Expect = 6.160e-42
Identity = 86/188 (45.74%), Postives = 114/188 (60.64%), Query Frame = 1
Query:   52 EGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            EGHRLV D +  G  P  V++   AL +S G RL  AL  L  D V   PA +V++  DT   QGV+A++    LPLP     VLVCDGI DPGNLGTL+R+AAG G D V+L   C D W  KT+R+ MGA FR+P   + +WA+ ++L+        AA+ G  L+H + DW   +AL+VG+EA G
Sbjct:    1 EGHRLVLDALASGLQPEFVVIHDAALASSIGERLGTALAQLETDRVVRTPAHIVEQLSDTQTPQGVIAVLAHEPLPLPPAPTLVLVCDGISDPGNLGTLLRSAAGSGVDAVLLLPGCSDPWGLKTLRSGMGAQFRVPLQHMGTWADTSDLLADWSCTALAADAGGELAHDEVDWRRGAALIVGSEAHG 188          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A7S0LQQ5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQQ5_9EUKA)

HSP 1 Score: 159 bits (401), Expect = 4.900e-41
Identity = 89/208 (42.79%), Postives = 124/208 (59.62%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAAL-ETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARGEA 621
            R    +R RD  G ++ EGHRL+ D ++ G+S   V++S EAL A  G RL  +L E L A+ +A+AP  ++    DT   QGVV ++++P L LP +   VLV D I DPGNLGTL+R+AAG G +  +L   C D W  K +RA MGA  RLP + +  +AE A +++  G    AA+      ++  DW  PSALVVG+EA G A
Sbjct:   45 RKLQAKRARDKSGLMILEGHRLLTDALDAGYSADFVLLSEEALHAPEGARLARSLREVLRAEQLAIAPQSLIAELSDTQTPQGVVGMLQQPRLALPESPSFVLVLDRISDPGNLGTLLRSAAGAGVESALLLSGCTDPWGLKALRAGMGAQLRLPLVEVRGYAEAAGMLRRWGCHGVAADARGETDYWAVDWRQPSALVVGSEAHGLA 252          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A8J5X903_DIALT (SpoU_sub_bind domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X903_DIALT)

HSP 1 Score: 157 bits (398), Expect = 9.910e-41
Identity = 91/208 (43.75%), Postives = 123/208 (59.13%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLP--LPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDA-DWTSPSALVVGAEARG 615
            R    RR R+  G +L EG RLV D ++ G     V+V+   L   PG  LQ  L  LPA VV++A    +   C TV+ QG+VA V  P     LP     VLV D + DPGN+GTLVR AAG G D VV  G C D W+PK +R++MG +FRLP +  + WA++   +Q  G+R+ AA+GG + S + A DW +P A+V+G+EA G
Sbjct:   27 RRLESRRHRERDGLLLLEGLRLVTDALDAGFCAETVLVAEALLAQQPG--LQRVLAALPAGVVSLADEAALAAACTTVSPQGIVAAVRMPERTGALPDAASLVLVLDNLSDPGNVGTLVRGAAGFGCDAVVALGACADAWSPKALRSAMGGTFRLPIVPAQEWAQLRAQLQRAGLRVLAADGGVAASDYAAVDWRAPLAVVIGSEATG 232          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A0P6YEI2_9CHLR (SpoU_sub_bind domain-containing protein n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0P6YEI2_9CHLR)

HSP 1 Score: 147 bits (370), Expect = 4.560e-37
Identity = 86/206 (41.75%), Postives = 119/206 (57.77%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHS-PALVIVSPEALRASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            R  H+RR R+  GK+L EG RLV D  + G +  AL   S +A       R  A L +           EV+Q   DTV  QG+VA+ ERP L  P +   +L+ D ++DPGNLGTL+R AAG G +GV+L    VD W+PK +RA MGA FRLP     +W E+A+ +   G+ +Y A+   ++ +FD DWT+P+ L+VG E  G
Sbjct:   16 RALHRRRMREREGKILLEGARLVHDAFQAGVAFEALFYTSDQAAHIPEALRSCAWLVS----------EEVMQALSDTVTPQGIVAVAERPQLAWPTSATLLLIADNVRDPGNLGTLLRAAAGAGVEGVLLPKGTVDVWSPKVLRAGMGAHFRLPVRAGLTWEEIAQAVN--GLTVYVADARGAVRYFDVDWTAPTVLIVGGETEG 209          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: R7QT73_CHOCR (SpoU_sub_bind domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT73_CHOCR)

HSP 1 Score: 147 bits (370), Expect = 1.380e-36
Identity = 92/211 (43.60%), Postives = 124/211 (58.77%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALETLPADV--VAVAP---AEVVQRC-CDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            R+  +RR RD    +L EG RL+ D +    +P  +  S + LR S      AA+  L ADV     AP   AE + R  C+TV+ QGVVA++ERP LPLP +    LVCD ++DPGN+GTL+R+AAG G D V++T  C D W  K +RA MGA FRLP    +SW EV +++   G  +  A+GG    +   DW  P+A+VVG EA G
Sbjct:   47 RSLLRRRHRDKNNLILLEGQRLIEDALSASFAPHQLFYSDKLLRRS------AAMGALLADVRRSGCAPMLVAEPIMRSLCNTVSPQGVVAVLERPALPLPDSGTLALVCDEVRDPGNVGTLLRSAAGAGVDAVLMTHGCADPWGLKVLRAGMGAHFRLPVQVDQSWDEVMQVVHKWGCEVSVADGGGE-DYAKVDWCGPAAIVVGGEANG 250          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A1X6PKW2_PORUM (SpoU_sub_bind domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKW2_PORUM)

HSP 1 Score: 147 bits (372), Expect = 2.870e-36
Identity = 92/204 (45.10%), Postives = 120/204 (58.82%), Query Frame = 1
Query:   13 KRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALET---LPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            +RR R+  G +L EGHRLV D + G   PA  + +  A R +   RL  AL T   +  D + VA  +VV   CDTV  QGVVA+V RP   +      +L  DG+ DPGN+GTL+R+AA  GADGVVLT  C D W+PK +RA MGA  RLP L      EV    + RG+R+  A+G A +++   DW +P+ LVVG EA G
Sbjct:  108 RRRMREREGLLLLEGHRLVVDAL-GAARPAAPVHTVVATRQAAA-RLWPALSTATGVARDALLVATPDVVASVCDTVTPQGVVAVVGRPSTTVVPGSTLLLALDGVADPGNVGTLLRSAAAAGADGVVLTKGCADVWSPKALRAGMGAQLRLPVLAGLEPEEVVAWARGRGLRLRVADGSAVMAYDGVDWAAPTVLVVGGEAEG 309          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A7C7US29_9CHLR (RNA methyltransferase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7US29_9CHLR)

HSP 1 Score: 143 bits (360), Expect = 1.420e-35
Identity = 84/205 (40.98%), Postives = 122/205 (59.51%), Query Frame = 1
Query:    1 RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            R+ H+RR R      + EG RLV + ++ G  P LV  +P+      G  L A +E LP +   V   +V++   DTV+ QG++A+V    LP P     VLV D ++DPGNLGT++R+A   GA+ V+LT   VD ++PK VR +MGA F LP     SW+E+AE ++ R + +  AEG     +++ DWT PSAL+VG+EA G
Sbjct:   13 RSLHRRRVRHRERNFVVEGLRLVEEALKAGVVPTLVFFTPDLGSGRRGRELLAVIEDLPGECFVVTD-KVMRALSDTVSPQGILAVVPFLGLPFPENPWLVLVVDRVRDPGNLGTILRSAEAAGANQVILTPATVDVYSPKVVRGAMGAHFYLPIATRASWSEMAEALEGRQILLAEAEG--EKVYYEVDWTKPSALIVGSEAEG 214          
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Match: A0A7S0BQI0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQI0_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 3.600e-35
Identity = 81/201 (40.30%), Postives = 114/201 (56.72%), Query Frame = 1
Query:   16 RRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEAL-RASPGPRLQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQTVLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGASFRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVGAEARG 615
            RR R++ G +  EG RLV D +   + P ++ V   AL +   G  +Q  + TLP D V  +  E++Q   DT   QGV A+ ++     PA    VL  D + DPGN+GTL+RTAAG GA GV LT    D +  KT+RA MGA FR+P L    W+++    + RG+ +  A+G   + H++ DW  PS LV+GAEA G
Sbjct:   33 RRVRENEGLIFVEGTRLVLDAVAAQNEPEVLFVGERALNKGDYGVAMQKLVSTLPNDRVVYSSEEIMQHLTDTENCQGVAAVFKKKKAMAPAQPSLVLALDRLSDPGNVGTLIRTAAGAGAHGVFLTKGSADPFGLKTLRAGMGAQFRIPVLPNWEWSDIESYSRERGLSLVVADGSGDVPHYNYDWKVPSVLVIGAEADG 233          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7936.16902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4S8_9PHAE1.950e-11689.27SpoU_sub_bind domain-containing protein n=2 Tax=Ec... [more]
A0A835Z4A7_9STRA2.280e-7157.56tRNA/rRNA methyltransferase n=1 Tax=Tribonema minu... [more]
A0A7S2B686_9EUKA6.160e-4245.74Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0LQQ5_9EUKA4.900e-4142.79Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J5X903_DIALT9.910e-4143.75SpoU_sub_bind domain-containing protein n=1 Tax=Di... [more]
A0A0P6YEI2_9CHLR4.560e-3741.75SpoU_sub_bind domain-containing protein n=2 Tax=Ar... [more]
R7QT73_CHOCR1.380e-3643.60SpoU_sub_bind domain-containing protein n=1 Tax=Ch... [more]
A0A1X6PKW2_PORUM2.870e-3645.10SpoU_sub_bind domain-containing protein n=1 Tax=Po... [more]
A0A7C7US29_9CHLR1.420e-3540.98RNA methyltransferase n=1 Tax=Anaerolineae bacteri... [more]
A0A7S0BQI0_9RHOD3.600e-3540.30Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7936contigL-elsbetiae_contig7936:853..4343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score374.0
Seed ortholog evalue4.5e-101
Seed eggNOG ortholog2880.D7FLV7
Preferred nameRNMTL1
KEGG rclassRC00004,RC02723,RC02817
KEGG koko:K00140,ko:K03437,ko:K03768,ko:K20095
KEGG ReactionR00705,R00706,R00922,R00935
KEGG Pathwayko00280,ko00410,ko00562,ko00640,ko01100,ko01200,map00280,map00410,map00562,map00640,map01100,map01200
KEGG ModuleM00013
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070039,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.RNA methyltransferase activity
EggNOG OGsCOG0566@1,KOG2506@2759
EC1.2.1.18,1.2.1.27,5.2.1.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03110
Ec32 ortholog descriptiontRNA/rRNA methyltransferase, SpoU type
Ec32 orthologEc-26_001080.1
Exons5
Model size1552
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7936.16902.1prot_L-elsbetiae_contig7936.16902.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7936 1778..4343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.386281-UTR-L-elsbetiae_contig7936:852..17771622816878.386281-UTR-L-elsbetiae_contig7936:852..1777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7936 853..1777 -
1691683881.6996021-UTR-L-elsbetiae_contig7936:852..17771691683881.6996021-UTR-L-elsbetiae_contig7936:852..1777Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7936 853..1777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.3964126-CDS-L-elsbetiae_contig7936:1777..19081622816878.3964126-CDS-L-elsbetiae_contig7936:1777..1908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 1778..1908 -
1691683881.7145545-CDS-L-elsbetiae_contig7936:1777..19081691683881.7145545-CDS-L-elsbetiae_contig7936:1777..1908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 1778..1908 -
1622816878.4081726-CDS-L-elsbetiae_contig7936:2621..27331622816878.4081726-CDS-L-elsbetiae_contig7936:2621..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 2622..2733 -
1691683881.7288032-CDS-L-elsbetiae_contig7936:2621..27331691683881.7288032-CDS-L-elsbetiae_contig7936:2621..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 2622..2733 -
1622816878.4183023-CDS-L-elsbetiae_contig7936:3075..31281622816878.4183023-CDS-L-elsbetiae_contig7936:3075..3128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 3076..3128 -
1691683881.7399833-CDS-L-elsbetiae_contig7936:3075..31281691683881.7399833-CDS-L-elsbetiae_contig7936:3075..3128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 3076..3128 -
1622816878.428608-CDS-L-elsbetiae_contig7936:3638..38461622816878.428608-CDS-L-elsbetiae_contig7936:3638..3846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 3639..3846 -
1691683881.7514577-CDS-L-elsbetiae_contig7936:3638..38461691683881.7514577-CDS-L-elsbetiae_contig7936:3638..3846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 3639..3846 -
1622816878.4386368-CDS-L-elsbetiae_contig7936:4220..43431622816878.4386368-CDS-L-elsbetiae_contig7936:4220..4343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 4221..4343 -
1691683881.761719-CDS-L-elsbetiae_contig7936:4220..43431691683881.761719-CDS-L-elsbetiae_contig7936:4220..4343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7936 4221..4343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7936.16902.1

>prot_L-elsbetiae_contig7936.16902.1 ID=prot_L-elsbetiae_contig7936.16902.1|Name=mRNA_L-elsbetiae_contig7936.16902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=209bp
RTFHKRRTRDDGGKVLAEGHRLVCDLIEGGHSPALVIVSPEALRASPGPR
LQAALETLPADVVAVAPAEVVQRCCDTVASQGVVALVERPVLPLPATLQT
VLVCDGIQDPGNLGTLVRTAAGLGADGVVLTGTCVDYWAPKTVRASMGAS
FRLPSLRLESWAEVAELMQARGVRMYAAEGGASLSHFDADWTSPSALVVG
AEARGEAF*
back to top

mRNA from alignment at L-elsbetiae_contig7936:853..4343-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7936.16902.1 ID=mRNA_L-elsbetiae_contig7936.16902.1|Name=mRNA_L-elsbetiae_contig7936.16902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3491bp|location=Sequence derived from alignment at L-elsbetiae_contig7936:853..4343- (Laminarionema elsbetiae ELsaHSoW15)
AGAACGTTCCACAAGCGGCGGACACGAGACGACGGCGGCAAGGTCTTGGC CGAAGGTCACCGGCTAGTGTGCGATCTCATCGAGGGGGGTCACAGCCCAG CCCTCGTCATCGTGTCGCCTGAGGTGAAGCTAACCTGAGTAGATGCAGCC GCTTGACAACCTTGGCCTGCTGTACGCGAAGCTCAGCGAAGCTTAGCGAA GCCTGAAGCCGCCCGTAACTCCGCATCAAGGGGTGTAATACCGAATGATA AGCGTTTAGTCTATCGGATATCACCTATGCCAGCGCACGCGTGGAGGTTT CCTTGGACTAAGTTGAGACACGAGTGTGGTGTTGATGCGGTCTGCTGATA AATAAGCAGTGCGGCGAGCGAGTTCAGGTGAAGCGCTAGCAACAACAACA ACAACAGCAACAACAACAACAACGACACCAACAACAGCCCTGCGTGCTTA GCCTTGACGACAACACCTGGCGTGCCTCGCCCGTTCACGCACGACAGGCA CTCCGTGCATCCCCGGGGCCCCGGCTGCAGGCCGCGCTGGAGACGCTGCC AGCCGACGTTGTTGCCGTCGCCCCCGCGGAGGTTGTCCAGCGTTGCTGCG ACACCGTCGCTTCGCAGGGTGTTGTGGCGCTGGTGGAGCGGCCGGTGCTT CCCCTCCCCGCCACCCTTCAAACGGTGTTGGTCTGCGACGGCATCCAAGA CCCAGGTAGGCGTGGGTGTGTGCGCAAGACACTGCGGCTCTTGTGGAAGC GACGGGATCCAATAGCCCGGCCGGCTAAGGAGCTACGGTAGGTGACGCAA GATAACACACCCCCTGGAAAGATTTTCAAAGCTCTGTTCCTCCCCAGCAG GAAGAGCGCCAGTACCGAAAGGGGGGGCGTTGGAAATATCTATTGTTTAG TCGAGGGCTGTCCGAAAACGTGTCTCGTTTGATGCTGGCACTCTCTTCGT TACGGAGTAATGGAGCTCCAAAAGTCGGTCCACGGGGTGCGGTAGCTTGT GCCATCTACGGTATGGTAGGTGGCAGTGTGGCTTCTCAAGTTCTTTTTTT TTTTGTCTCGTTCTTTGGGGGGTGGGTCCAAGGCTGCTGACTTTTTGTTT TATCGAAGCAAGTGATGAAAGGCAGTCGGTGCTCGACCGTATCCGGTGTG CGATCCTGGCGACCCTTTACTGTGCCCGTTCCCTCCTTCCCCCCGAATCC TGTCCCGATCCAAAGGGAACCTCGGGACTCTCGTGAGGACAGCGGCGGGT TTAGGAGCAGACGGTGTGGTGAGTTGTTGCTGTGTAGCACGGCGGTGGGG TCGAGAGAGACGGGCTTGTTTTCAACAAGACGGCGTCTTTCGGGCGTTGA TATCTGCTTTTGATGGGTCGCCACGGGCCGCCTGCTGCCGGCTCATTGCG GTTGTGGCGTGTATCTCTCCTTAGCTTCGGCAGTTGATGACGATGAAAGT GTCGCGTAGTTGAGATAGATCCACATACAATACATAGATAGCTCGGTTCC TAGGGGGCACACGCTCGTGCTCTCCAGTGCAGCTTCCGCCTCGTTTTGAT TTCCCGTCTGGCTGGCCCCTTGCTGTAAAACTGCCGAAATTTGTTGTTGC GCCCGCCCAGGTGCTGACGGGGACGTGCGTGGACTACTGGGCACCGAAAA CGGTGCGCGCTTCCATGGGGGCTTCGTTTCGTCTCCCGTCGCTGAGACTG GAGTCCTGGGCGGAGGTAGCCGGTAAGCGTCTTTGTTGATGTTTAGGGTC AGGTATTATGGCACCAGCGCAGCAAAAAGAGCGTCCGCGGGTATCGCAAT CTTGGGGGGTGCTGGGCGAGGAGGGTGCGCCGCACCTAGGTGTCGGGTGG GGGAGGAACCGGGAGAATATTTTCAGCTGAGCGTCAAAAGCTGGCGGTTT GTTGTCCGTCCAGCAACGTTTCCGTGGGCCGCCTACGCAGAAATTAATTT TATACTACTAACTCTAACCCTAACCCTAACCCCAACCACCGACCCCCCAA ACGGTTTCCATACTTTATCCCATATGTTAGCTTAAGACGAAAACCCCGCG TAGACTACTGGTTTCCGTTTAGCAACGTTGCAGGGCTTACACATCGCGTC CTTGGTTGTCTTCGACCGCGCACAGCAACCCGCTCTCTTTTGTGTTATGT AGCCAACGACCGGCTTATGCTCAGCCAGCGTCGAGCGTGTGGCCGTGTGG CGCCCTACCGTGGAGCGTGACACCTGGCATTGCCCGCAACCTCGGTGCGT TAGAGTAAAAAAAAAAAGAACCATGTTCTGGTTATGTACATACCACGGCC CCGTCCTCGCATTCGGCCCTTTCCGTCAAAGGAACTACCTCATAATACCA GCGACCCCCTGAAGCTGAGCATCCCTGCCCTGGTCCCCAACCCCCCCCCC CCCCTTTCCTCCCCTTCAACACTCATTTCAAGCAGAGCTCATGCAGGCGC GCGGCGTGCGCATGTACGCGGCGGAAGGAGGTGCGAGCTTGTCGCACTTC GATGCCGACTGGACCTCTCCGAGCGCGCTGGTAGTCGGCGCGGAAGCGAG GGGTGAGGCTTTTTGAGGACGACCGAAAAGAAGACACGCAAGCCAAAGAG AGCCACGCAGCAGCGAGCGAGAATACTTTATATTAAAGGGGGTTAGTCAT GCCTACAACAGTTCCCTCTGGAACAACTTTTTCACAGACTGGACGTATGT AGGCTGCTGACATTTGTATGCATTAATTAATAATAAACAAAGAATCAAAG ATGGAATCTAACCCACACTACATAAGAGCAAAGGCTCGATATGGGGTTCA AACGGTATTCCATACAGAGACGTAATATTTGGCGAAGCGCGCAGAAAAAC AACCTAAATATCAGAAGAGTTCAACATCTCCCCTGCAAAGATTTAAGATT TGCGAGGTCGGCCAACAATTATTCCGGCGGGTAGAGCCCACCGTGATGCC GTATTTTGTTCGGGGGCCGATTGGTTGATTGGTTGATATACTCGCAGATG GCGTTTTGCAAGCTGGTTTCGACTCGCAGATGGCGCGAGCTCTGCGGCTG CTGGACAGCTACTGCACTCCGCGGGTGCATGCCGCACGCGGAAACCCGCG CGTGTTTGCTCCTCTCATGCCGCCGCGGTTACGGGGTTCGGGTGTAGGTG AAGTGTGCCTGCTACATATGCATGCATCATTCCGGGGTTTGAGTTTAGGT GAATTGTGCCTGCTATGTATGCATGCATCATATTCGCATTTGTTGTCGAG CCTTTCTCTCTGCACCGCGTACCCGCGCCCGCAGCTTTCCATCTGTTTTT TCCGACTTTCCCAGAGAAAGGCAAGAGCTCCACGTGCTAAGAGCCACAAG ACTGGGAAACAATGCTACCCCCTCCGCGCGCGCCCTCTCTGTTCCATCAA ACGACCATAGGCCTGGGCGAAGCTGCGAGGCGTGGGCTAGAAAGCGGGGA TGTCGTCGGGGTCAGCGTGCCCCTGCAGGGTGGAGTGGAGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7936:853..4343-

>mRNA_L-elsbetiae_contig7936.16902.1 ID=mRNA_L-elsbetiae_contig7936.16902.1|Name=mRNA_L-elsbetiae_contig7936.16902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig7936:853..4343- (Laminarionema elsbetiae ELsaHSoW15)
AGAACGTTCCACAAGCGGCGGACACGAGACGACGGCGGCAAGGTCTTGGC
CGAAGGTCACCGGCTAGTGTGCGATCTCATCGAGGGGGGTCACAGCCCAG
CCCTCGTCATCGTGTCGCCTGAGAGAACGTTCCACAAGCGGCGGACACGA
GACGACGGCGGCAAGGTCTTGGCCGAAGGTCACCGGCTAGTGTGCGATCT
CATCGAGGGGGGTCACAGCCCAGCCCTCGTCATCGTGTCGCCTGAGGCAC
TCCGTGCATCCCCGGGGCCCCGGCTGCAGGCCGCGCTGGAGACGCTGCCA
GCCGACGTTGTTGCCGTCGCCCCCGCGGAGGTTGTCCAGCGTTGCTGCGA
CACCGTCGCTTCGCAGGGTGTTGTGGCGCTGGTGGAGCGGCCGGTGCTTC
CCCTCCCCGCCACCCTTCAAACGGTGTTGGTCTGCGACGGCATCCAAGAC
CCAGGCACTCCGTGCATCCCCGGGGCCCCGGCTGCAGGCCGCGCTGGAGA
CGCTGCCAGCCGACGTTGTTGCCGTCGCCCCCGCGGAGGTTGTCCAGCGT
TGCTGCGACACCGTCGCTTCGCAGGGTGTTGTGGCGCTGGTGGAGCGGCC
GGTGCTTCCCCTCCCCGCCACCCTTCAAACGGTGTTGGTCTGCGACGGCA
TCCAAGACCCAGGGAACCTCGGGACTCTCGTGAGGACAGCGGCGGGTTTA
GGAGCAGACGGTGTGGGAACCTCGGGACTCTCGTGAGGACAGCGGCGGGT
TTAGGAGCAGACGGTGTGGTGCTGACGGGGACGTGCGTGGACTACTGGGC
ACCGAAAACGGTGCGCGCTTCCATGGGGGCTTCGTTTCGTCTCCCGTCGC
TGAGACTGGAGTCCTGGGCGGAGGTAGCCGGTGCTGACGGGGACGTGCGT
GGACTACTGGGCACCGAAAACGGTGCGCGCTTCCATGGGGGCTTCGTTTC
GTCTCCCGTCGCTGAGACTGGAGTCCTGGGCGGAGGTAGCCGAGCTCATG
CAGGCGCGCGGCGTGCGCATGTACGCGGCGGAAGGAGGTGCGAGCTTGTC
GCACTTCGATGCCGACTGGACCTCTCCGAGCGCGCTGGTAGTCGGCGCGG
AAGCGAGGGGTGAGGCTTTTTGAAGCTCATGCAGGCGCGCGGCGTGCGCA
TGTACGCGGCGGAAGGAGGTGCGAGCTTGTCGCACTTCGATGCCGACTGG
ACCTCTCCGAGCGCGCTGGTAGTCGGCGCGGAAGCGAGGGGTGAGGCTTT
TTGA
back to top