mRNA_L-elsbetiae_contig7935.16900.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7935.16900.1
Unique NamemRNA_L-elsbetiae_contig7935.16900.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A8J5XPH7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPH7_DIALT)

HSP 1 Score: 72.8 bits (177), Expect = 3.400e-15
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYS 231
            MHPLVR+L KRF+L  + +P G A  ++K +EAL+  A L  + +IKRAVARGR +V++ +   +  +YR M++RYS
Sbjct:    1 MHPLVRDLYKRFLLVGKDYPGGLALVRRKAKEALRNQAHLQDELEIKRAVARGRWMVRELQGIIKLKKYREMKKRYS 77          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A7S1UA59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA59_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.690e-14
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYSD 234
            MHPLVR+L KRF+L  R +P+G A  + + + A+  NA L+ + +IKRAVA+GR +V++     +  +YRAMR+RY +
Sbjct:   28 MHPLVRDLYKRFLLVGREYPTGLADVRARAKAAILANAHLTEEVEIKRAVAKGRYMVREMYAVMQLKKYRAMRKRYEE 105          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: L1J1M7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J1M7_GUITC)

HSP 1 Score: 67.4 bits (163), Expect = 4.800e-13
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSE-EFSRFSRYRAMRRRYS 231
            MHPLVR+L KRF+L  R +P G    K+KV+EA   N  L  D +I+RAVARGR  +++      +F +YR M+ RYS
Sbjct:    1 MHPLVRDLYKRFILVGRDYPGGLQIIKKKVKEAFFTNRHLEDDIEIRRAVARGRWYIRNELCAIIQFKKYRVMKERYS 78          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A7S2V0J7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0J7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.520e-13
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYSDR 237
            MH LVR+L KRFVLA   +       ++KV+E+  RNA LSS+EDIKRAV  GR +VK+     +  +YR M+ RY ++
Sbjct:    7 MHALVRDLYKRFVLAGSYYHEPWVLTREKVKESFFRNANLSSEEDIKRAVHYGRYMVKEMVALEQLKKYRTMKHRYGEK 85          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A485K3V6_9STRA (Aste57867_786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3V6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.810e-12
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYS 231
            MHPLVR+  KR +L  R +P G  + ++K +EA  + A L++DE+IKRAV RGR + K+     +  +YRAM +RY+
Sbjct:    2 MHPLVRDAYKRLLLVGRDYPLGLDYVREKAKEAFLKQAHLTNDEEIKRAVHRGRWMAKEMIGVIQLKKYRAMNQRYT 78          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A6G0WG47_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WG47_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.620e-12
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYS 231
            MHPLVR++ KR ++  R +P G  + ++K +EA  + A L++DE+IKRAV RGR +VK+     +  +YR M  RY+
Sbjct:    1 MHPLVRDVYKRILVVGRDYPMGLDYVREKAKEAFYKEAHLTADEEIKRAVHRGRWMVKEMIGVIQLKKYRTMNARYT 77          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A5A8CP96_CAFRO (Complex1_LYR_dom domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CP96_CAFRO)

HSP 1 Score: 62.0 bits (149), Expect = 5.800e-11
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRY 228
            MHPLVR+L KRF++A R +P G    +++ + A Q NA L+ +  IKRAVA+GR  V++        +YR++++RY
Sbjct:    1 MHPLVRDLYKRFLVAGRDYPQGLDVVRRRAKLAFQENAHLTDEVAIKRAVAKGRYWVREIHATHALHKYRSIKKRY 76          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A067CLU1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLU1_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 4.950e-10
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYS 231
            M P VR+L KRF++  + +P G  + + KV+EA  + A L+ + +IK+AV+RGR +VK+     +  +YRAM +RY+
Sbjct:    1 MQPRVRDLYKRFLVVGKDYPLGLEYVRPKVKEAFFKKAALADEAEIKKAVSRGRWMVKEMIGVIQLKKYRAMNQRYT 77          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A7S2C6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C6K2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.930e-10
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYSD 234
            MHPLVR+L KRF+   R +P    + + K REA+ +N  L+   +I  AV RGR +VK+     +  +YRA+++RY D
Sbjct:   50 MHPLVRDLFKRFIYVGRDYPLPPPYVRDKAREAILKNKDLTDAREIIEAVKRGRWMVKEIIGVIQLKKYRALKKRYYD 127          
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Match: A0A024TFL8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFL8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.010e-9
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAVARGRQVVKDSEEFSRFSRYRAMRRRYSDRD 240
            MHPLVR++ KR +   R +P G  + ++K +    + A L+++EDIKRAV  GR  VK+     +  +YRAM +RY+  D
Sbjct:    1 MHPLVRDVYKRVLAVGRDYPLGLDYVREKAKATFFKQAHLTAEEDIKRAVHVGRWKVKEMVGVIQLKKYRAMNQRYTPAD 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7935.16900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A8J5XPH7_DIALT3.400e-1546.75Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S1UA59_9STRA2.690e-1444.87Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1J1M7_GUITC4.800e-1347.44Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2V0J7_9STRA6.520e-1346.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485K3V6_9STRA1.810e-1244.16Aste57867_786 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A6G0WG47_9STRA2.620e-1242.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5A8CP96_CAFRO5.800e-1142.11Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A067CLU1_SAPPC4.950e-1040.26Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2C6K2_9STRA7.930e-1041.03Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A024TFL8_9STRA1.010e-940.00Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7935contigL-elsbetiae_contig7935:4576..4818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816878.3049245-CDS-L-elsbetiae_contig7935:4575..48181622816878.3049245-CDS-L-elsbetiae_contig7935:4575..4818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7935 4576..4818 +
1691683881.6639132-CDS-L-elsbetiae_contig7935:4575..48181691683881.6639132-CDS-L-elsbetiae_contig7935:4575..4818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7935 4576..4818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7935.16900.1prot_L-elsbetiae_contig7935.16900.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7935 4576..4818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7935.16900.1

>prot_L-elsbetiae_contig7935.16900.1 ID=prot_L-elsbetiae_contig7935.16900.1|Name=mRNA_L-elsbetiae_contig7935.16900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MHPLVRNLCKRFVLASRRHPSGEAWFKQKVREALQRNARLSSDEDIKRAV
ARGRQVVKDSEEFSRFSRYRAMRRRYSDRD*
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mRNA from alignment at L-elsbetiae_contig7935:4576..4818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7935.16900.1 ID=mRNA_L-elsbetiae_contig7935.16900.1|Name=mRNA_L-elsbetiae_contig7935.16900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=243bp|location=Sequence derived from alignment at L-elsbetiae_contig7935:4576..4818+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATCCACTGGTCAGAAACCTCTGCAAGAGGTTTGTTCTGGCCTCTCG TCGGCATCCATCAGGAGAGGCCTGGTTCAAACAAAAAGTCCGGGAGGCTC TGCAAAGAAATGCGCGGCTCTCTTCTGACGAAGATATCAAGAGGGCCGTA GCTCGAGGGCGCCAAGTTGTCAAGGACTCGGAAGAGTTTTCCAGGTTTTC TCGATATAGGGCCATGCGTAGGAGGTACTCGGATCGAGATTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7935:4576..4818+

>mRNA_L-elsbetiae_contig7935.16900.1 ID=mRNA_L-elsbetiae_contig7935.16900.1|Name=mRNA_L-elsbetiae_contig7935.16900.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig7935:4576..4818+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATCCACTGGTCAGAAACCTCTGCAAGAGGTTTGTTCTGGCCTCTCG
TCGGCATCCATCAGGAGAGGCCTGGTTCAAACAAAAAGTCCGGGAGGCTC
TGCAAAGAAATGCGCGGCTCTCTTCTGACGAAGATATCAAGAGGGCCGTA
GCTCGAGGGCGCCAAGTTGTCAAGGACTCGGAAGAGTTTTCCAGGTTTTC
TCGATATAGGGCCATGCGTAGGAGGTACTCGGATCGAGATTAGATGCATC
CACTGGTCAGAAACCTCTGCAAGAGGTTTGTTCTGGCCTCTCGTCGGCAT
CCATCAGGAGAGGCCTGGTTCAAACAAAAAGTCCGGGAGGCTCTGCAAAG
AAATGCGCGGCTCTCTTCTGACGAAGATATCAAGAGGGCCGTAGCTCGAG
GGCGCCAAGTTGTCAAGGACTCGGAAGAGTTTTCCAGGTTTTCTCGATAT
AGGGCCATGCGTAGGAGGTACTCGGATCGAGATTAG
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