mRNA_L-elsbetiae_contig793.16896.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig793.16896.1
Unique NamemRNA_L-elsbetiae_contig793.16896.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig793.16896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig793contigL-elsbetiae_contig793:21917..23076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size405
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig793.16896.1prot_L-elsbetiae_contig793.16896.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig793 21917..23076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.6074378-CDS-L-elsbetiae_contig793:21916..219941622816877.6074378-CDS-L-elsbetiae_contig793:21916..21994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig793 21917..21994 +
1691683881.1534224-CDS-L-elsbetiae_contig793:21916..219941691683881.1534224-CDS-L-elsbetiae_contig793:21916..21994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig793 21917..21994 +
1622816877.6225953-CDS-L-elsbetiae_contig793:22405..225571622816877.6225953-CDS-L-elsbetiae_contig793:22405..22557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig793 22406..22557 +
1691683881.1643033-CDS-L-elsbetiae_contig793:22405..225571691683881.1643033-CDS-L-elsbetiae_contig793:22405..22557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig793 22406..22557 +
1622816877.6337287-CDS-L-elsbetiae_contig793:22901..230761622816877.6337287-CDS-L-elsbetiae_contig793:22901..23076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig793 22902..23076 +
1691683881.175063-CDS-L-elsbetiae_contig793:22901..230761691683881.175063-CDS-L-elsbetiae_contig793:22901..23076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig793 22902..23076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig793.16896.1

>prot_L-elsbetiae_contig793.16896.1 ID=prot_L-elsbetiae_contig793.16896.1|Name=mRNA_L-elsbetiae_contig793.16896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MSKGGRDIGRKPMPKWKRGYVGFKRKVKSSVFVPLLLVVAVCGAGVHIVG
LTSVSFGYFTWNVGCEGVVTVAGNSERANGLQTYNLGWIQYKGRGPSSSS
DSPTLPVNATNDNNSTIGSELGKGGVAGSSIPELG
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mRNA from alignment at L-elsbetiae_contig793:21917..23076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig793.16896.1 ID=mRNA_L-elsbetiae_contig793.16896.1|Name=mRNA_L-elsbetiae_contig793.16896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1160bp|location=Sequence derived from alignment at L-elsbetiae_contig793:21917..23076+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAAAGGTGGCCGAGATATTGGACGCAAGCCCATGCCAAAATGGAA
GAGGGGGTACGTCGGGTTCAAGCGGAAGGTGATAACATCCCGCTCTGCTG
TCATCCCGCTCTGCTGTTTCTACACTTTTGTATTCAATCGGTCGGAGATG
TGTGTGTGTGGGTGTATGTTTATATGCTGTTGTAGGGGCAATTCAAATGG
GAGTTCAGCAACGAGGGTTTGTCAAGTGCTGTTTCCTCAATATGATGAGC
ACATACATGCAGCAGATCACATGTATGTGCATCAATGCCAAGATTTATCT
ACCGCGGTTCCTGCTCTATTGACTGTAACTCTATTTGCTGACACTAAAAT
ATCCGCGTTCACGGAATAAGGGTCTCGTGTTTTGCGCTCCACTTGAAAAT
GTAGCATCGGTAGGGTGTAATCGTCTGGATACTTGCTGATCACACCAGAA
AGTCTGATGCCCCCCGGTGTCAACACCGTTCCTAAAAAGGTCAAGTCCAG
CGTTTTCGTGCCGCTCCTGCTGGTTGTGGCTGTATGCGGAGCGGGAGTAC
ACATCGTTGGTCTCACTAGCGTGTCCTTCGGCTACTTCACGTGGAATGTT
GGTTGCGAAGGAGTCGTGACTGTGGCGGGAAACAGCGAAAGGTAATTCAC
GCATTGTACCGAACGAACGACTTTTCAAGTAGCAGAACGCTGGGACGCTG
TCTAGATAGAAGACTACATAAATAGTGTACTATTGTGAAACGATTTTTAT
TCGATCAAGATGCGCCTAGGACTGTACATCAGTGGCCATGTTTGAGAGAA
CGACCTACAATGCATGCGTGGTATACCATCAGTGAATGACTCCCCCGAAA
ACTCCAGCCAGATACGGTCCGAAGTCGTGATGTCGGGAGAAACTTGAAAA
TGCCAACACCTCCTCTCTCTATCCTTACCCATGGCAACTGCATGCCTCTA
TCACATCTGGTTACACCCGCGGGCACCGATACAAGAGCCAACGGGCTGCA
GACTTACAACCTGGGTTGGATACAGTACAAAGGCAGGGGTCCGAGCAGTT
CCTCCGACTCCCCCACGCTACCGGTCAACGCCACCAACGACAACAACAGC
ACAATCGGGTCTGAACTCGGGAAGGGGGGAGTCGCGGGCTCGAGCATCCC
GGAACTGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig793:21917..23076+

>mRNA_L-elsbetiae_contig793.16896.1 ID=mRNA_L-elsbetiae_contig793.16896.1|Name=mRNA_L-elsbetiae_contig793.16896.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig793:21917..23076+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAAAGGTGGCCGAGATATTGGACGCAAGCCCATGCCAAAATGGAA
GAGGGGGTACGTCGGGTTCAAGCGGAAGATGTCCAAAGGTGGCCGAGATA
TTGGACGCAAGCCCATGCCAAAATGGAAGAGGGGGTACGTCGGGTTCAAG
CGGAAGGTCAAGTCCAGCGTTTTCGTGCCGCTCCTGCTGGTTGTGGCTGT
ATGCGGAGCGGGAGTACACATCGTTGGTCTCACTAGCGTGTCCTTCGGCT
ACTTCACGTGGAATGTTGGTTGCGAAGGAGTCGTGACTGTGGCGGGAAAC
AGCGAAAGGTCAAGTCCAGCGTTTTCGTGCCGCTCCTGCTGGTTGTGGCT
GTATGCGGAGCGGGAGTACACATCGTTGGTCTCACTAGCGTGTCCTTCGG
CTACTTCACGTGGAATGTTGGTTGCGAAGGAGTCGTGACTGTGGCGGGAA
ACAGCGAAAGAGCCAACGGGCTGCAGACTTACAACCTGGGTTGGATACAG
TACAAAGGCAGGGGTCCGAGCAGTTCCTCCGACTCCCCCACGCTACCGGT
CAACGCCACCAACGACAACAACAGCACAATCGGGTCTGAACTCGGGAAGG
GGGGAGTCGCGGGCTCGAGCATCCCGGAACTGGGCAGCCAACGGGCTGCA
GACTTACAACCTGGGTTGGATACAGTACAAAGGCAGGGGTCCGAGCAGTT
CCTCCGACTCCCCCACGCTACCGGTCAACGCCACCAACGACAACAACAGC
ACAATCGGGTCTGAACTCGGGAAGGGGGGAGTCGCGGGCTCGAGCATCCC
GGAACTGGGC
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