mRNA_L-elsbetiae_contig7929.16892.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7929.16892.1
Unique NamemRNA_L-elsbetiae_contig7929.16892.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7929.16892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7929contigL-elsbetiae_contig7929:4317..4650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.4427352-UTR-L-elsbetiae_contig7929:4316..43321622816877.4427352-UTR-L-elsbetiae_contig7929:4316..4332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7929 4317..4332 +
1691683881.0328913-UTR-L-elsbetiae_contig7929:4316..43321691683881.0328913-UTR-L-elsbetiae_contig7929:4316..4332Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7929 4317..4332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.4537966-CDS-L-elsbetiae_contig7929:4332..46501622816877.4537966-CDS-L-elsbetiae_contig7929:4332..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7929 4333..4650 +
1691683881.0449858-CDS-L-elsbetiae_contig7929:4332..46501691683881.0449858-CDS-L-elsbetiae_contig7929:4332..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7929 4333..4650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7929.16892.1prot_L-elsbetiae_contig7929.16892.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7929 4333..4650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7929.16892.1

>prot_L-elsbetiae_contig7929.16892.1 ID=prot_L-elsbetiae_contig7929.16892.1|Name=mRNA_L-elsbetiae_contig7929.16892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MRLCLLVLHHQSTQRGGVCFHFSRAFSEGESVPRSSLFGCADITRTISSV
ESSYRLRLKDCASATSWLRQIIQRPRDTDRLRRTHLHIAVYPKYISMIDA
TENKTR
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mRNA from alignment at L-elsbetiae_contig7929:4317..4650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7929.16892.1 ID=mRNA_L-elsbetiae_contig7929.16892.1|Name=mRNA_L-elsbetiae_contig7929.16892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=334bp|location=Sequence derived from alignment at L-elsbetiae_contig7929:4317..4650+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCTGCAAAAGTCAAATGCGCCTGTGTCTACTCGTTCTCCACCACCAGT
CAACTCAGAGGGGGGGGGTCTGTTTTCACTTTTCTCGTGCGTTTTCTGAG
GGAGAAAGCGTCCCGAGATCTTCCTTGTTTGGCTGCGCGGATATTACAAG
AACAATTAGCTCGGTGGAAAGTTCTTACCGGCTGCGACTCAAAGACTGTG
CAAGCGCGACAAGTTGGTTGAGACAAATTATTCAGCGACCACGTGACACA
GATCGCCTCCGCCGGACTCATCTACATATAGCTGTGTATCCAAAATATAT
TTCAATGATCGATGCTACAGAAAACAAAACCCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7929:4317..4650+

>mRNA_L-elsbetiae_contig7929.16892.1 ID=mRNA_L-elsbetiae_contig7929.16892.1|Name=mRNA_L-elsbetiae_contig7929.16892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig7929:4317..4650+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCTGTGTCTACTCGTTCTCCACCACCAGTCAACTCAGAGGGGGGG
GGTCTGTTTTCACTTTTCTCGTGCGTTTTCTGAGGGAGAAAGCGTCCCGA
GATCTTCCTTGTTTGGCTGCGCGGATATTACAAGAACAATTAGCTCGGTG
GAAAGTTCTTACCGGCTGCGACTCAAAGACTGTGCAAGCGCGACAAGTTG
GTTGAGACAAATTATTCAGCGACCACGTGACACAGATCGCCTCCGCCGGA
CTCATCTACATATAGCTGTGTATCCAAAATATATTTCAATGATCGATGCT
ACAGAAAACAAAACCCGTATGCGCCTGTGTCTACTCGTTCTCCACCACCA
GTCAACTCAGAGGGGGGGGGTCTGTTTTCACTTTTCTCGTGCGTTTTCTG
AGGGAGAAAGCGTCCCGAGATCTTCCTTGTTTGGCTGCGCGGATATTACA
AGAACAATTAGCTCGGTGGAAAGTTCTTACCGGCTGCGACTCAAAGACTG
TGCAAGCGCGACAAGTTGGTTGAGACAAATTATTCAGCGACCACGTGACA
CAGATCGCCTCCGCCGGACTCATCTACATATAGCTGTGTATCCAAAATAT
ATTTCAATGATCGATGCTACAGAAAACAAAACCCGT
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