mRNA_L-elsbetiae_contig7929.16891.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7929.16891.1
Unique NamemRNA_L-elsbetiae_contig7929.16891.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7929.16891.1 vs. uniprot
Match: D8LM54_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM54_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.120e-12
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = -3 
Query:   10 DMDGAAEPTRWALEQGGLEWTDKRVTREEFGDLKP 114
            DM GAAEP RWALE+GGLEW DKR+TREEFG LKP
Sbjct:   11 DMAGAAEPVRWALEKGGLEWEDKRLTREEFGALKP 45
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BLAST of mRNA_L-elsbetiae_contig7929.16891.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.770e-10
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = -3 
Query:    7 DMDGAAEPTRWALEQGGLEWTDKRVTREEFGDLKPS 114
            D  GAAEP RWALE+G LEW DKR+TREEFG LKPS
Sbjct:   11 DKAGAAEPIRWALEKGSLEWEDKRLTREEFGALKPS 46
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BLAST of mRNA_L-elsbetiae_contig7929.16891.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.490e-8
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = -3 
Query:    7 DMDGAAEPTRWALEQGGLEWTDKRVTREEFGDLKPS 114
            D+ GAAEP RWALEQ G EW DKR+T EEFG +KPS
Sbjct:   11 DIPGAAEPIRWALEQSGQEWEDKRLTGEEFGVVKPS 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7929.16891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM54_ECTSI2.120e-1282.86Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KRV2_9PHAE8.770e-1077.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B1N8E8_9PHAE2.490e-872.22Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7929contigL-elsbetiae_contig7929:2179..2522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.3998256-CDS-L-elsbetiae_contig7929:2178..25051622816877.3998256-CDS-L-elsbetiae_contig7929:2178..2505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7929 2179..2505 +
1691683881.008807-CDS-L-elsbetiae_contig7929:2178..25051691683881.008807-CDS-L-elsbetiae_contig7929:2178..2505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7929 2179..2505 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.4128084-UTR-L-elsbetiae_contig7929:2505..25221622816877.4128084-UTR-L-elsbetiae_contig7929:2505..2522Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7929 2506..2522 +
1691683881.0202525-UTR-L-elsbetiae_contig7929:2505..25221691683881.0202525-UTR-L-elsbetiae_contig7929:2505..2522Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7929 2506..2522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7929.16891.1prot_L-elsbetiae_contig7929.16891.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7929 2179..2505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7929.16891.1

>prot_L-elsbetiae_contig7929.16891.1 ID=prot_L-elsbetiae_contig7929.16891.1|Name=mRNA_L-elsbetiae_contig7929.16891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
QLTWLEIPKFFPGHALVGPLKPSLLQGPAGRFRGTVHVTAAGARIKQRGA
DTVTWDCYIHRGTGEPRTAQQQPVEEREEGVQRATCMFNNLLSCHTHKYV
RVSVGDIS*
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mRNA from alignment at L-elsbetiae_contig7929:2179..2522+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7929.16891.1 ID=mRNA_L-elsbetiae_contig7929.16891.1|Name=mRNA_L-elsbetiae_contig7929.16891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=344bp|location=Sequence derived from alignment at L-elsbetiae_contig7929:2179..2522+ (Laminarionema elsbetiae ELsaHSoW15)
CAACTCACTTGGCTTGAGATCCCCAAATTCTTCCCTGGTCACGCGCTTGT
CGGTCCACTCAAGCCCTCCCTGCTCCAGGGCCCAGCGGGTCGGTTCCGCG
GCACCGTCCATGTCACTGCAGCCGGGGCGAGGATCAAACAACGCGGAGCG
GATACCGTTACATGGGACTGTTACATACATAGAGGCACCGGAGAACCGCG
AACCGCACAACAACAGCCAGTAGAGGAGAGAGAGGAAGGTGTGCAACGCG
CGACGTGCATGTTTAATAACTTATTATCCTGCCACACTCACAAGTACGTG
AGGGTGAGTGTAGGAGACATATCTTGAGGCAGTCAATCTGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7929:2179..2522+

>mRNA_L-elsbetiae_contig7929.16891.1 ID=mRNA_L-elsbetiae_contig7929.16891.1|Name=mRNA_L-elsbetiae_contig7929.16891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig7929:2179..2522+ (Laminarionema elsbetiae ELsaHSoW15)
CAACTCACTTGGCTTGAGATCCCCAAATTCTTCCCTGGTCACGCGCTTGT
CGGTCCACTCAAGCCCTCCCTGCTCCAGGGCCCAGCGGGTCGGTTCCGCG
GCACCGTCCATGTCACTGCAGCCGGGGCGAGGATCAAACAACGCGGAGCG
GATACCGTTACATGGGACTGTTACATACATAGAGGCACCGGAGAACCGCG
AACCGCACAACAACAGCCAGTAGAGGAGAGAGAGGAAGGTGTGCAACGCG
CGACGTGCATGTTTAATAACTTATTATCCTGCCACACTCACAAGTACGTG
AGGGTGAGTGTAGGAGACATATCTTGACAACTCACTTGGCTTGAGATCCC
CAAATTCTTCCCTGGTCACGCGCTTGTCGGTCCACTCAAGCCCTCCCTGC
TCCAGGGCCCAGCGGGTCGGTTCCGCGGCACCGTCCATGTCACTGCAGCC
GGGGCGAGGATCAAACAACGCGGAGCGGATACCGTTACATGGGACTGTTA
CATACATAGAGGCACCGGAGAACCGCGAACCGCACAACAACAGCCAGTAG
AGGAGAGAGAGGAAGGTGTGCAACGCGCGACGTGCATGTTTAATAACTTA
TTATCCTGCCACACTCACAAGTACGTGAGGGTGAGTGTAGGAGACATATC
TTGA
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