mRNA_L-elsbetiae_contig7928.16890.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7928.16890.1
Unique NamemRNA_L-elsbetiae_contig7928.16890.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7928.16890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7928contigL-elsbetiae_contig7928:3466..3906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.3278773-CDS-L-elsbetiae_contig7928:3465..39061622816877.3278773-CDS-L-elsbetiae_contig7928:3465..3906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7928 3466..3906 +
1691683880.9753914-CDS-L-elsbetiae_contig7928:3465..39061691683880.9753914-CDS-L-elsbetiae_contig7928:3465..3906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7928 3466..3906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7928.16890.1prot_L-elsbetiae_contig7928.16890.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7928 3466..3906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7928.16890.1

>prot_L-elsbetiae_contig7928.16890.1 ID=prot_L-elsbetiae_contig7928.16890.1|Name=mRNA_L-elsbetiae_contig7928.16890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
WPSPVFASSSSIFGAEPPAVEAAAAATAVAAAATAAVSSSLAESLAPCIV
PWRFSGVGNGTGNSGTPFVESSFGPLRADRGVPRALAGTVVKWVAGLPIR
GDVLRLVGGPEPSSRVTVAAATAAAAAAVAAAAAASSMSSSRACPFS
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mRNA from alignment at L-elsbetiae_contig7928:3466..3906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7928.16890.1 ID=mRNA_L-elsbetiae_contig7928.16890.1|Name=mRNA_L-elsbetiae_contig7928.16890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=441bp|location=Sequence derived from alignment at L-elsbetiae_contig7928:3466..3906+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCCTTCCCCGGTTTTTGCCTCTTCTTCGTCCATCTTCGGTGCCGAACC
ACCAGCAGTAGAAGCGGCAGCGGCAGCAACAGCAGTGGCAGCGGCGGCAA
CAGCAGCAGTGTCGTCTTCGCTAGCAGAATCACTCGCCCCATGCATCGTA
CCCTGGCGGTTTTCGGGCGTGGGCAACGGGACCGGCAACTCTGGTACACC
GTTCGTCGAGTCAAGCTTCGGGCCTTTGCGCGCCGATCGCGGGGTTCCTC
GTGCTCTCGCCGGGACCGTCGTCAAGTGGGTGGCGGGGCTTCCTATACGG
GGTGATGTTCTTCGCCTCGTGGGCGGACCGGAACCTTCATCACGGGTGAC
TGTAGCAGCAGCAACAGCGGCGGCAGCAGCAGCGGTAGCAGCAGCAGCGG
CAGCATCTTCCATGTCATCGTCACGAGCTTGTCCTTTCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7928:3466..3906+

>mRNA_L-elsbetiae_contig7928.16890.1 ID=mRNA_L-elsbetiae_contig7928.16890.1|Name=mRNA_L-elsbetiae_contig7928.16890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig7928:3466..3906+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCCTTCCCCGGTTTTTGCCTCTTCTTCGTCCATCTTCGGTGCCGAACC
ACCAGCAGTAGAAGCGGCAGCGGCAGCAACAGCAGTGGCAGCGGCGGCAA
CAGCAGCAGTGTCGTCTTCGCTAGCAGAATCACTCGCCCCATGCATCGTA
CCCTGGCGGTTTTCGGGCGTGGGCAACGGGACCGGCAACTCTGGTACACC
GTTCGTCGAGTCAAGCTTCGGGCCTTTGCGCGCCGATCGCGGGGTTCCTC
GTGCTCTCGCCGGGACCGTCGTCAAGTGGGTGGCGGGGCTTCCTATACGG
GGTGATGTTCTTCGCCTCGTGGGCGGACCGGAACCTTCATCACGGGTGAC
TGTAGCAGCAGCAACAGCGGCGGCAGCAGCAGCGGTAGCAGCAGCAGCGG
CAGCATCTTCCATGTCATCGTCACGAGCTTGTCCTTTCTCTTGGCCTTCC
CCGGTTTTTGCCTCTTCTTCGTCCATCTTCGGTGCCGAACCACCAGCAGT
AGAAGCGGCAGCGGCAGCAACAGCAGTGGCAGCGGCGGCAACAGCAGCAG
TGTCGTCTTCGCTAGCAGAATCACTCGCCCCATGCATCGTACCCTGGCGG
TTTTCGGGCGTGGGCAACGGGACCGGCAACTCTGGTACACCGTTCGTCGA
GTCAAGCTTCGGGCCTTTGCGCGCCGATCGCGGGGTTCCTCGTGCTCTCG
CCGGGACCGTCGTCAAGTGGGTGGCGGGGCTTCCTATACGGGGTGATGTT
CTTCGCCTCGTGGGCGGACCGGAACCTTCATCACGGGTGACTGTAGCAGC
AGCAACAGCGGCGGCAGCAGCAGCGGTAGCAGCAGCAGCGGCAGCATCTT
CCATGTCATCGTCACGAGCTTGTCCTTTCTCT
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