mRNA_L-elsbetiae_contig7928.16889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7928.16889.1
Unique NamemRNA_L-elsbetiae_contig7928.16889.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7928.16889.1 vs. uniprot
Match: D7FZ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ15_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.260e-39
Identity = 69/104 (66.35%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   73 VTLEDGKTWNPFAGDKTHRVAVWDRKKRSMVGGLEAPMRQDLRTLLEDGRYEVYNGQDKKHTGPITFTKTGTMSNDPRGRGRGRPPLSANPAVSLSTSPAIGTT 384
            V LE GKTW+P+AG++THRVAVW+ K R M+GG+ APMR++LR  L +G+YE+YNGQD K+TGP+TF+KTGT SNDPRGRGRGRPP SA P   L TSP   TT
Sbjct:  561 VLLEGGKTWDPYAGEETHRVAVWEPKSRRMIGGVSAPMRRELRAFLAEGKYEIYNGQDGKNTGPVTFSKTGTPSNDPRGRGRGRPPNSAAPVAVLLTSPCRETT 664
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BLAST of mRNA_L-elsbetiae_contig7928.16889.1 vs. uniprot
Match: A0A6H5KQ85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ85_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.570e-36
Identity = 64/98 (65.31%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   73 VTLEDGKTWNPFAGDKTHRVAVWDRKKRSMVGGLEAPMRQDLRTLLEDGRYEVYNGQDKKHTGPITFTKTGTMSNDPRGRGRGRPPLSANPAVSLSTS 366
            V LE GKTW+P+AG++THRVAVW+ K  +M+GG+ APMR++LR  L  G+YE+YNGQD K+TGP+TF+K GT SNDPRGRGRGRPP SA P   L TS
Sbjct:  791 VLLEGGKTWDPYAGEETHRVAVWEPKSGNMIGGVSAPMRRELRAFLAKGKYEIYNGQDGKNTGPVTFSKAGTPSNDPRGRGRGRPPNSAAPVAVLLTS 888
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7928.16889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ15_ECTSI1.260e-3966.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ85_9PHAE1.570e-3665.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7928contigL-elsbetiae_contig7928:2382..3089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.3567135-CDS-L-elsbetiae_contig7928:2381..26031622816877.3567135-CDS-L-elsbetiae_contig7928:2381..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7928 2382..2603 -
1691683880.98769-CDS-L-elsbetiae_contig7928:2381..26031691683880.98769-CDS-L-elsbetiae_contig7928:2381..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7928 2382..2603 -
1622816877.367056-CDS-L-elsbetiae_contig7928:2861..30891622816877.367056-CDS-L-elsbetiae_contig7928:2861..3089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7928 2862..3089 -
1691683880.9989564-CDS-L-elsbetiae_contig7928:2861..30891691683880.9989564-CDS-L-elsbetiae_contig7928:2861..3089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7928 2862..3089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7928.16889.1prot_L-elsbetiae_contig7928.16889.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7928 2382..3089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7928.16889.1

>prot_L-elsbetiae_contig7928.16889.1 ID=prot_L-elsbetiae_contig7928.16889.1|Name=mRNA_L-elsbetiae_contig7928.16889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
AELQLRLAISAVAATAAAAAVAAEVTLEDGKTWNPFAGDKTHRVAVWDRK
KRSMVGGLEAPMRQDLRTLLEDGRYEVYNGQDKKHTGPITFTKTGTMSND
PRGRGRGRPPLSANPAVSLSTSPAIGTTAATTVTVTTSAAAANLLPSNNR
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mRNA from alignment at L-elsbetiae_contig7928:2382..3089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7928.16889.1 ID=mRNA_L-elsbetiae_contig7928.16889.1|Name=mRNA_L-elsbetiae_contig7928.16889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig7928:2382..3089- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAATTGCAGCTGAGGTTGGCGATTTCAGCGGTGGCGGCGACGGCGGC
GGCGGCGGCGGTGGCGGCGGAGGTCACGCTGGAAGATGGGAAGACGTGGA
ACCCGTTCGCCGGCGATAAGACCCACAGAGTGGCCGTGTGGGACCGGAAA
AAAAGGAGCATGGTCGGGGGGCTGGAAGCGCCGATGCGTCAGGACCTCAG
AACGCTCCTGGAGGACGGGCGGTACGAAGTGAGTCACATTTTGAGGATAG
CAAGTGCTGTTTTTTGTTGCCTTTCCCCCCGCTACAGCTTTACGTGCTGG
GGAGTCTACAGTTAACGTCCCTCGTTGAGCGTCACCCAGTTTTTTTCCCT
CTTTTTGCGTATGCTGCTCGGATGTTCGACTGCTGATGCTTATTAACCGA
AGCAACCATCACCTCGTTGACGGCTTTCCTTTCATCTCCCTCTTCCTTGG
CACATGTGCGTCTCGGGCCTTGGTGCATCCCGGTAGGTGTACAACGGGCA
AGATAAAAAACACACCGGCCCCATCACCTTTACCAAAACGGGCACCATGA
GCAATGATCCAAGGGGACGGGGACGCGGCCGCCCGCCGCTCTCCGCCAAT
CCCGCCGTCTCCCTCTCCACCTCTCCCGCCATCGGAACCACCGCCGCTAC
TACCGTCACCGTGACCACTTCGGCCGCCGCCGCGAATCTCCTACCGAGCA
ACAACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7928:2382..3089-

>mRNA_L-elsbetiae_contig7928.16889.1 ID=mRNA_L-elsbetiae_contig7928.16889.1|Name=mRNA_L-elsbetiae_contig7928.16889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig7928:2382..3089- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAATTGCAGCTGAGGTTGGCGATTTCAGCGGTGGCGGCGACGGCGGC
GGCGGCGGCGGTGGCGGCGGAGGTCACGCTGGAAGATGGGAAGACGTGGA
ACCCGTTCGCCGGCGATAAGACCCACAGAGTGGCCGTGTGGGACCGGAAA
AAAAGGAGCATGGTCGGGGGGCTGGAAGCGCCGATGCGTCAGGACCTCAG
AACGCTCCTGGAGGACGGGCGGTACGAAGCAGAATTGCAGCTGAGGTTGG
CGATTTCAGCGGTGGCGGCGACGGCGGCGGCGGCGGCGGTGGCGGCGGAG
GTCACGCTGGAAGATGGGAAGACGTGGAACCCGTTCGCCGGCGATAAGAC
CCACAGAGTGGCCGTGTGGGACCGGAAAAAAAGGAGCATGGTCGGGGGGC
TGGAAGCGCCGATGCGTCAGGACCTCAGAACGCTCCTGGAGGACGGGCGG
TACGAAGTGTACAACGGGCAAGATAAAAAACACACCGGCCCCATCACCTT
TACCAAAACGGGCACCATGAGCAATGATCCAAGGGGACGGGGACGCGGCC
GCCCGCCGCTCTCCGCCAATCCCGCCGTCTCCCTCTCCACCTCTCCCGCC
ATCGGAACCACCGCCGCTACTACCGTCACCGTGACCACTTCGGCCGCCGC
CGCGAATCTCCTACCGAGCAACAACCGCGTGTACAACGGGCAAGATAAAA
AACACACCGGCCCCATCACCTTTACCAAAACGGGCACCATGAGCAATGAT
CCAAGGGGACGGGGACGCGGCCGCCCGCCGCTCTCCGCCAATCCCGCCGT
CTCCCTCTCCACCTCTCCCGCCATCGGAACCACCGCCGCTACTACCGTCA
CCGTGACCACTTCGGCCGCCGCCGCGAATCTCCTACCGAGCAACAACCGC
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