mRNA_L-elsbetiae_contig7925.16886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7925.16886.1
Unique NamemRNA_L-elsbetiae_contig7925.16886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7925.16886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7925contigL-elsbetiae_contig7925:6751..7273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size523
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7925.16886.1prot_L-elsbetiae_contig7925.16886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7925 6860..7267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.075801-UTR-L-elsbetiae_contig7925:6750..68591622816877.075801-UTR-L-elsbetiae_contig7925:6750..6859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7925 6751..6859 +
1691683880.7965367-UTR-L-elsbetiae_contig7925:6750..68591691683880.7965367-UTR-L-elsbetiae_contig7925:6750..6859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7925 6751..6859 +
1622816877.098867-UTR-L-elsbetiae_contig7925:7267..72731622816877.098867-UTR-L-elsbetiae_contig7925:7267..7273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7925 7268..7273 +
1691683880.8267403-UTR-L-elsbetiae_contig7925:7267..72731691683880.8267403-UTR-L-elsbetiae_contig7925:7267..7273Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7925 7268..7273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.0883496-CDS-L-elsbetiae_contig7925:6859..72671622816877.0883496-CDS-L-elsbetiae_contig7925:6859..7267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7925 6860..7267 +
1691683880.8119633-CDS-L-elsbetiae_contig7925:6859..72671691683880.8119633-CDS-L-elsbetiae_contig7925:6859..7267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7925 6860..7267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7925.16886.1

>prot_L-elsbetiae_contig7925.16886.1 ID=prot_L-elsbetiae_contig7925.16886.1|Name=mRNA_L-elsbetiae_contig7925.16886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MTNSQVMCPSPNTYDHYIHRFYFAHSRTHISRLYLYCWLAPPSSSLFRCT
RAPPIVFGSHFVHITHCKCVCPFLKYVHTATRFCVFDLVPIAHLLSRCLG
TQYSSYYCCSDRCIFPTPNFDMFSPPLRVIIHSKK*
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mRNA from alignment at L-elsbetiae_contig7925:6751..7273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7925.16886.1 ID=mRNA_L-elsbetiae_contig7925.16886.1|Name=mRNA_L-elsbetiae_contig7925.16886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=523bp|location=Sequence derived from alignment at L-elsbetiae_contig7925:6751..7273+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGGGTGCGAGGAGGCTCCTCTTCTTCCCTGCTGAGACGTGGGGCCTGC
ACTTGATCAGAGGAAGAGGGCTTATTGTGAAAATCCTGCCGCTTGCGTGA
ATAATTCATATGACAAATAGTCAAGTTATGTGTCCCTCGCCAAACACGTA
CGATCACTACATACATAGGTTTTATTTTGCCCACTCCCGTACACACATAT
CTAGACTATATCTATATTGCTGGTTGGCTCCCCCCTCTTCCTCTTTGTTT
CGGTGTACAAGAGCCCCTCCTATCGTTTTCGGTTCACATTTCGTACATAT
CACTCATTGTAAATGTGTCTGTCCCTTCCTCAAATACGTACATACGGCCA
CGAGGTTTTGTGTTTTCGATCTCGTACCTATTGCTCATTTGCTCTCTCGT
TGTTTAGGTACACAATATAGCAGCTACTACTGCTGCAGTGATCGGTGCAT
ATTTCCGACCCCAAACTTCGACATGTTCAGTCCCCCTTTGCGAGTCATCA
TTCATTCAAAAAAATAAATGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7925:6751..7273+

>mRNA_L-elsbetiae_contig7925.16886.1 ID=mRNA_L-elsbetiae_contig7925.16886.1|Name=mRNA_L-elsbetiae_contig7925.16886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig7925:6751..7273+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAATAGTCAAGTTATGTGTCCCTCGCCAAACACGTACGATCACTA
CATACATAGGTTTTATTTTGCCCACTCCCGTACACACATATCTAGACTAT
ATCTATATTGCTGGTTGGCTCCCCCCTCTTCCTCTTTGTTTCGGTGTACA
AGAGCCCCTCCTATCGTTTTCGGTTCACATTTCGTACATATCACTCATTG
TAAATGTGTCTGTCCCTTCCTCAAATACGTACATACGGCCACGAGGTTTT
GTGTTTTCGATCTCGTACCTATTGCTCATTTGCTCTCTCGTTGTTTAGGT
ACACAATATAGCAGCTACTACTGCTGCAGTGATCGGTGCATATTTCCGAC
CCCAAACTTCGACATGTTCAGTCCCCCTTTGCGAGTCATCATTCATTCAA
AAAAATAAATGACAAATAGTCAAGTTATGTGTCCCTCGCCAAACACGTAC
GATCACTACATACATAGGTTTTATTTTGCCCACTCCCGTACACACATATC
TAGACTATATCTATATTGCTGGTTGGCTCCCCCCTCTTCCTCTTTGTTTC
GGTGTACAAGAGCCCCTCCTATCGTTTTCGGTTCACATTTCGTACATATC
ACTCATTGTAAATGTGTCTGTCCCTTCCTCAAATACGTACATACGGCCAC
GAGGTTTTGTGTTTTCGATCTCGTACCTATTGCTCATTTGCTCTCTCGTT
GTTTAGGTACACAATATAGCAGCTACTACTGCTGCAGTGATCGGTGCATA
TTTCCGACCCCAAACTTCGACATGTTCAGTCCCCCTTTGCGAGTCATCAT
TCATTCAAAAAAATAA
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