mRNA_L-elsbetiae_contig7925.16885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7925.16885.1
Unique NamemRNA_L-elsbetiae_contig7925.16885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7925.16885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7925contigL-elsbetiae_contig7925:6094..6728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size635
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.029865-UTR-L-elsbetiae_contig7925:6093..62451622816877.029865-UTR-L-elsbetiae_contig7925:6093..6245Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7925 6094..6245 +
1691683880.770246-UTR-L-elsbetiae_contig7925:6093..62451691683880.770246-UTR-L-elsbetiae_contig7925:6093..6245Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7925 6094..6245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816877.043297-CDS-L-elsbetiae_contig7925:6245..67281622816877.043297-CDS-L-elsbetiae_contig7925:6245..6728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7925 6246..6728 +
1691683880.7811022-CDS-L-elsbetiae_contig7925:6245..67281691683880.7811022-CDS-L-elsbetiae_contig7925:6245..6728Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7925 6246..6728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7925.16885.1prot_L-elsbetiae_contig7925.16885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7925 6246..6728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7925.16885.1

>prot_L-elsbetiae_contig7925.16885.1 ID=prot_L-elsbetiae_contig7925.16885.1|Name=mRNA_L-elsbetiae_contig7925.16885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MSSPNALSISSRNSRSTFMLLLLLLIVLEAVVLSLLLLIVLEAVVLSVEG
VQARNNQGTTARWVSERLYMLSHSSPSTLSRPESGNACMSPWGAPCSSRR
SLSVLPSRLLSPTASCVESDPGKTAGTQVLYTIVSAAVMRSVGGVRPSSR
PRPRPLPLLPL
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mRNA from alignment at L-elsbetiae_contig7925:6094..6728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7925.16885.1 ID=mRNA_L-elsbetiae_contig7925.16885.1|Name=mRNA_L-elsbetiae_contig7925.16885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=635bp|location=Sequence derived from alignment at L-elsbetiae_contig7925:6094..6728+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTTTTTCTTTATAAAGCTCGAGCACGAAAGATAAGGCGTGCCTGATA
AATTACTCCAACGCAGTTCCCCCCCTTCCCACCTGAATTTAAAACAATAA
AAACGCAGCTTGCTCTCTACGCATTCAGCATGCTCCAGCCTTCTCTGCCT
TCATGTCTTCTCCCAATGCCTTGTCAATCTCGTCTAGAAATTCCAGATCG
ACGTTTATGCTCCTGTTGTTGCTGTTGATCGTGTTGGAGGCCGTGGTGTT
GTCGTTGTTGCTGTTGATCGTATTGGAGGCCGTGGTTTTGTCGGTTGAAG
GTGTCCAAGCTAGGAACAACCAAGGCACCACCGCAAGGTGGGTCTCGGAG
AGGCTGTATATGTTGTCCCACTCCTCGCCAAGCACCCTGTCTAGGCCGGA
ATCCGGAAATGCGTGCATGTCGCCGTGGGGGGCACCTTGTTCCTCCAGAA
GGTCGCTCTCGGTGCTGCCCTCGAGGTTGCTGTCCCCAACTGCCTCCTGT
GTCGAGAGCGATCCCGGGAAGACCGCAGGCACACAAGTGTTGTACACGAT
TGTGTCAGCGGCGGTCATGCGGTCGGTCGGCGGCGTGCGGCCAAGTTCGC
GGCCGCGGCCACGGCCGCTGCCGCTGCTGCCGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7925:6094..6728+

>mRNA_L-elsbetiae_contig7925.16885.1 ID=mRNA_L-elsbetiae_contig7925.16885.1|Name=mRNA_L-elsbetiae_contig7925.16885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig7925:6094..6728+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCTCCCAATGCCTTGTCAATCTCGTCTAGAAATTCCAGATCGAC
GTTTATGCTCCTGTTGTTGCTGTTGATCGTGTTGGAGGCCGTGGTGTTGT
CGTTGTTGCTGTTGATCGTATTGGAGGCCGTGGTTTTGTCGGTTGAAGGT
GTCCAAGCTAGGAACAACCAAGGCACCACCGCAAGGTGGGTCTCGGAGAG
GCTGTATATGTTGTCCCACTCCTCGCCAAGCACCCTGTCTAGGCCGGAAT
CCGGAAATGCGTGCATGTCGCCGTGGGGGGCACCTTGTTCCTCCAGAAGG
TCGCTCTCGGTGCTGCCCTCGAGGTTGCTGTCCCCAACTGCCTCCTGTGT
CGAGAGCGATCCCGGGAAGACCGCAGGCACACAAGTGTTGTACACGATTG
TGTCAGCGGCGGTCATGCGGTCGGTCGGCGGCGTGCGGCCAAGTTCGCGG
CCGCGGCCACGGCCGCTGCCGCTGCTGCCGCTGATGTCTTCTCCCAATGC
CTTGTCAATCTCGTCTAGAAATTCCAGATCGACGTTTATGCTCCTGTTGT
TGCTGTTGATCGTGTTGGAGGCCGTGGTGTTGTCGTTGTTGCTGTTGATC
GTATTGGAGGCCGTGGTTTTGTCGGTTGAAGGTGTCCAAGCTAGGAACAA
CCAAGGCACCACCGCAAGGTGGGTCTCGGAGAGGCTGTATATGTTGTCCC
ACTCCTCGCCAAGCACCCTGTCTAGGCCGGAATCCGGAAATGCGTGCATG
TCGCCGTGGGGGGCACCTTGTTCCTCCAGAAGGTCGCTCTCGGTGCTGCC
CTCGAGGTTGCTGTCCCCAACTGCCTCCTGTGTCGAGAGCGATCCCGGGA
AGACCGCAGGCACACAAGTGTTGTACACGATTGTGTCAGCGGCGGTCATG
CGGTCGGTCGGCGGCGTGCGGCCAAGTTCGCGGCCGCGGCCACGGCCGCT
GCCGCTGCTGCCGCTG
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