mRNA_L-elsbetiae_contig7923.16883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7923.16883.1
Unique NamemRNA_L-elsbetiae_contig7923.16883.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7923.16883.1 vs. uniprot
Match: D7G453_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G453_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 3.510e-64
Identity = 93/109 (85.32%), Postives = 104/109 (95.41%), Query Frame = 2 
Query:    2 EEKPTSAAAMSGVGSTGSNVLLIVASLLVIKGLLLPENIRHLGFCPDEDPIRGKDTLPWRMMIESGRECGSVSEVMTKYITAPLAFPGTPEWGMMLNVKEDLAKDAWLQ 328
            E+ P+SAAAMSGVGS GSNVLL+VAS++V+KGLLLPEN+RHLGFCP EDPIRG+DTLPWRMMIESGRECG++ EVMTKY+TAPLAFPGTPEWGMMLN KEDLAKDAWLQ
Sbjct:  101 EDGPSSAAAMSGVGSVGSNVLLLVASVMVVKGLLLPENVRHLGFCPTEDPIRGRDTLPWRMMIESGRECGTIPEVMTKYVTAPLAFPGTPEWGMMLNTKEDLAKDAWLQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7923.16883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G453_ECTSI3.510e-6485.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7923contigL-elsbetiae_contig7923:4513..9212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002210.1
Exons3
Model size529
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7923.16883.1prot_L-elsbetiae_contig7923.16883.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7923 4541..9014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.829425-UTR-L-elsbetiae_contig7923:4512..45401622816876.829425-UTR-L-elsbetiae_contig7923:4512..4540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7923 4513..4540 +
1691683880.6072762-UTR-L-elsbetiae_contig7923:4512..45401691683880.6072762-UTR-L-elsbetiae_contig7923:4512..4540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7923 4513..4540 +
1622816876.8742616-UTR-L-elsbetiae_contig7923:9014..92121622816876.8742616-UTR-L-elsbetiae_contig7923:9014..9212Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7923 9015..9212 +
1691683880.6649523-UTR-L-elsbetiae_contig7923:9014..92121691683880.6649523-UTR-L-elsbetiae_contig7923:9014..9212Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7923 9015..9212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.8416033-CDS-L-elsbetiae_contig7923:4540..46321622816876.8416033-CDS-L-elsbetiae_contig7923:4540..4632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 4541..4632 +
1691683880.61864-CDS-L-elsbetiae_contig7923:4540..46321691683880.61864-CDS-L-elsbetiae_contig7923:4540..4632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 4541..4632 +
1622816876.8518617-CDS-L-elsbetiae_contig7923:6590..66931622816876.8518617-CDS-L-elsbetiae_contig7923:6590..6693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 6591..6693 +
1691683880.6320145-CDS-L-elsbetiae_contig7923:6590..66931691683880.6320145-CDS-L-elsbetiae_contig7923:6590..6693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 6591..6693 +
1622816876.8635395-CDS-L-elsbetiae_contig7923:8906..90141622816876.8635395-CDS-L-elsbetiae_contig7923:8906..9014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 8907..9014 +
1691683880.653125-CDS-L-elsbetiae_contig7923:8906..90141691683880.653125-CDS-L-elsbetiae_contig7923:8906..9014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 8907..9014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7923.16883.1

>prot_L-elsbetiae_contig7923.16883.1 ID=prot_L-elsbetiae_contig7923.16883.1|Name=mRNA_L-elsbetiae_contig7923.16883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MSGVGSTGSNVLLIVASLLVIKGLLLPENIRHLGFCPDEDPIRGKDTLPW
RMMIESGRECGSVSEVMTKYITAPLAFPGTPEWGMMLNVKEDLAKDAWLQ
*
back to top

mRNA from alignment at L-elsbetiae_contig7923:4513..9212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7923.16883.1 ID=mRNA_L-elsbetiae_contig7923.16883.1|Name=mRNA_L-elsbetiae_contig7923.16883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4700bp|location=Sequence derived from alignment at L-elsbetiae_contig7923:4513..9212+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGAAGCCGACCTCCGCTGCGGCCATGAGCGGGGTCGGCAGCACCG
GCAGCAACGTGCTGCTGATCGTGGCCTCGCTCCTGGTGATCAAGGGGCTT
CTTCTGCCCGAGAACATTCGGTGCGAATTTTACCGTAGTCATGCGGGTTA
TCGCACCCCCGTGTTCGCGTTTTTCTACATATGTATGGCGTATTTCTCCA
CAACCACGAGGGCACCACTGCCAGAAAGGGTTTTTTTCGAAACGTCTCGT
CGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTCGCACCCTCCTGGTTGT
GGAGAAAGACGCTATTGAAAAACGCCAACACGGGGGTGCGATAACCCGCA
TGATTACGGTACGAGAGAAAGGGAAGGGATGCTCCCTTCACGACGGTGTA
GTCGGTTATAATCAGGGATGTGAATATCCTGGTATTTACCGGATAATCCG
TTTGTAATTATCCGCGGTAGGTACCATGGAAATTCCCGGGTATTTTTACA
GTGTACGGGACCCCTCACCTGGGTGGTGGGGGGACCTTATACACTGTGCG
GGCCCCCTCCCACGCACGCCGACGCTCCCACACACATACACATGCAGCAG
ACCAACACAAAGACCACCATGGCCTCTTCAGCAGTGACAGCATGCACAGT
ACATAGCCGTATACAGCATACGGCGAGCTGCTCCCAAACGAACAAAATGT
TAAAACAATACATTGCACAACACCCCGGGGACGGGACGTTTTCGTCCCCG
GTCAGCGCGGATACATCCGGTCCGTACCCCCAAAGGCTGGTTTACGGATA
TTTCCGGTAGGTACCCTGCGTTTAGGCGGGTATTCCCACCGCTGATCATA
GTGCTACCCTCAATCTTGAACCCAAAAAACGTGTTTTTGAGCAAGAGGGG
TTGGAAAGGCATGTACCGATCGTGCTTGCAGTCTGCGTTTCTGCGGCTCG
GTGCCCCAAGGTTCAGAGTGGAGCGCCACAGAGGTTGCTCCAAGTGTGAC
GTGCGACATACATCGGTAGCGGCGGCCGGTGTGTACCGTAGGTGACACAA
GATACCACCCCCCCCCTGGACCTATTTTCAAAGCTCGATGATTCCTCCCC
AGCAAGAAGAGTTCCAGCGCTGGAAGAGGGTGGCGTTGGAAATATCTAGT
CGAAGGCTATCCGACAATGTGTCCTACGGTGCTGGTATCTACCTTCTTCG
TTACGGAGCAGTGGGGCTCTAAAAGTCGGTCCAGGGGGGGGGGGGTGATA
TCTTGTGTCACCTACGGTACTCCCCTGGGAAATGACCGAAACCGCCGTCG
ACCCCTGCAATCTTCCTGCCCCTTGTCCTATGATGCGCCGTTTTTTTTCT
TTCCTCTCTTGCTTTTTTCGCGGCGTCTTTCCTTTTCGTGTTCGGTCTCT
GGGATTGTTGTTGATTGTCGCGGGGCCCTCTCTTCTTTTTCTTTTTTCTT
TCCCCCCCCCATCACTGGCTTTTTCGTCGTCTGCCCCGCTGGCCCCCATC
CTTCACTATCTACGACTCTAGCTAGACGACCCAACCGGGGTCATACAGGA
GGGGGCCCGCCCCTCCTGCGGTGCCTGCCTGTGATGTTTTTTATCGCGAG
CAAGGTTCCAGCACTCCCTAACCTCGTCAGCAACGAAATCGAAGCATTAT
TTACTAACGAATTCGCTTTCATTTATCTCTACCTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTTCTTCACATTAAAACCGTTCCGATCTCTC
CACCCAGTACCTTCCTATGCCCGTACTATTCCAACACTTGATGCGGTTAA
TTCCCGTGATCACAGGGTAATTTATACCTAAACTATATACTAGCTGCCTC
TTTTCGATGTACGGAGTTTTTGCCACTCGGACCGCCCCCTCCCCTCTTCC
GCCTGCGCCTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTC
CTCGCATTTATTTCCAGTGCTCGATGGGCTCCCTGTCACGAGGACATCCT
GCCAGAGTACTGAACGGTGGTGTGTGCGCTTTTTTGTTTCACCTCTGGTT
GCCCGTTTTTTTTTCTTCTTCTCCGCAGGCACCTCGGCTTTTGCCCCGAT
GAAGATCCCATCAGGGGCAAGGATACGCTCCCGTGGAGGATGATGATAGA
GTCCGGCAGGGAATGCGGCTCTGTTTCCGAGGCAAGTCCATTTATTAGTG
CAGACCCCCACCCCCTCCGTGGCATGACGAGGAGGAGGCCCGAGAACAAG
TCCTGTTGCAGGGGGCGGGCAGATGTGAATAGCTTCCAGGTGGTAGGTAC
ATACATGGCTTCGCCTCCAGGTGGTAACTGTCTTCTCCAACCATTCGACC
TCCTGTGACCACGCTGATCCTCCCGTGTATTGCTGTTGTTATTGTGGTTT
CTCCACGTTCAAAAACGTTCCGACCTCTCCACCCAGTACCTCCCTATGTC
CGTTCTTAATCCAACACTTGATGCGGTCAATTCCCGTGGTCACAGGCTAC
GACTGTAGCTTATACCCTAAAAAAGGTATACGGAACTAAAATGATGGGCT
CGAAGGGTCTGCAAAGCGATAAAAACTATAGACAAATAGTGTGGAGCCCC
CCCGCTCCCCTGTACACGTTTTTTATTTCCTTCTTCTTCACATTTATTTC
CAGTGCTCGATGGGCTCCTTGCCACGAGGGCATCTTGCCAGGGTACAGAA
CCGTGGTCACACAGGAGGGTTTCTTTCCCCGAGGCCCTCAGCCCGCCCTT
GTTGTTCCGATGAAGCAAGCAGACGAAGCAGCAGTACCGAGCCTGCGGTA
AAGTTTGCCTCCTCTCGTCTCGGGTGTGTGTGTGTGTGTGTGTGTGTGTA
CGTCTCTCTCCACTGCTGCCGTGTGTTCTCGTGTTCTGAAAGGGGGAGGA
GACGCTGGGAGACCACTACCTAAAACAGGTAGTGCGTGGGCTGCATTTGG
CTGCTTGCCTTGTTCGATGCCCGCTGGCACGCTCATGTCTTGAGCATTGC
CATAAGAGACAGACCCACAAGATCGGCTGTATTTTTAGGGCATCCATCCA
AACTGTTGTTACATCTCTTCTCAGCTCCTTGTGTCGATCGCATTTCCGAA
AATAGAGCGTGATTATGGCTTCCCGACAAACCTAATCAGAGGCCGCTTGG
ACAATTGTTCGCCCCCCAAATAAGACCCCCCCCCCCCCCCCCCCCGATGT
GTAGAGTTTTGTTTTTTCGCTAGAAAAGTAACCAAGAAGAGGCTTCGCTT
GCGTGCCTCATTTTTACGTCACCATATGGAATACCGTATGTGACGTAAGA
TAAGACACCCCCTGGACCGGTTTTGAAAGCTTGGTTACTCCGCAACGAAT
ACGATTCTAACCATAAAGGCCACATTTTCGGAAAGCTCTCGGCGAGATCT
TTCCAACGCCGCCCTTTTTCGGGACTGACGCTCTGCTTGCTGTGGAGTAC
TTGAGCTTTGAAAATCGGTTCAGGGGGTGTCTTATCTTATGTCACCTACC
GTACCAGTCGAACCCCACGGGGTCCCATCTCAATGTGGGTTAGGTTTTTT
TTTATGAACTGATTTATGATTCAAAGAAGATCCTACCTTCGTGTCCATTT
TTATTTTCGTATCCTTTTTTTTTTAGGTGTAAGTTATCCTGTGACCACGG
GAATTGACCGCATCAAGTGTTGGGTTGTACGGACATAGGGATGTACTGGG
TGGGGAGAGATCGGAACGGTTTTTAATGTAAAGAGACAACAACAACAAGA
ACAACAACAACAACAACAACAACCTCCCCAAATAAGAGACGGGATTCCTT
GGCGAATTGCGTAATAAGCGATGCATTATCGGCCCAATCGAGAGTAGAAA
AACACCTAGAATAGTGTTAGAAAAGTTGCCGTCTCGTCCAACACAGCGGG
TTCCAAGGGCGCGCCCATTCAATGACCAACTACATAACCGCAAATTCTCG
CTTTCAACCGGGTCAGTAGTGTTCGTACCCCGTCTGCACCTTCCGCCTCC
ACAAGAAGACACACAGTAGTCAGTGGCTATTTTTTTTTTGTGTTTTTCGC
CCTTGGTGCTGTCATTGCGGCCGGGCGCAGGGCGCGCTTCAGAAAAGGCG
GCGCTCGTCGTGTTCTCTTCGTCGTGCCACTATTTTGTGGTTGTTGTTTG
TGTGTTGTTGTTGTTGTTGTTGTTGTCTCTTTACATTAAGAACCGTTCTG
ATCTCTCCACCCAGTACCTCTCGTGGGCATACTACTCCAACACTTGATGC
GGTCAATTACCGTGGTCACGGGGTAACTTATATACCTAAAAAAAGGTATA
CTGATTAGACTATATAAAACGGCTGATATTCTCGCACCCGCTCCCCTCTT
TTCTTTTTTTTCTTTTTTTTCTTCGTGGATGACCCCTTCAAAAGGTGATG
ACGAAGTACATCACTGCACCGCTCGCATTTCCGGGCACGCCAGAGTGGGG
AATGATGCTCAACGTCAAAGAGGATCTGGCGAAAGACGCATGGTTGCAGT
AGACGCGCAACCAGCAGCTGGTTGCCGCATCCACCGCAGGGATGTGTAGA
AATTGGATACAATGTAGACCGCTTGTGCGTGCGTGCCTATCTATCTGTGT
AGATTTGTATCTCGGTTTCGAAAGTTTTTTTCGGTGTTCGGTGCACGCAT
GTGAGGTCGGAACATACCGTAAGTTGCTCTGTTTTCCCCCCGGGGAGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7923:4513..9212+

>mRNA_L-elsbetiae_contig7923.16883.1 ID=mRNA_L-elsbetiae_contig7923.16883.1|Name=mRNA_L-elsbetiae_contig7923.16883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig7923:4513..9212+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGGGGTCGGCAGCACCGGCAGCAACGTGCTGCTGATCGTGGCCTC
GCTCCTGGTGATCAAGGGGCTTCTTCTGCCCGAGAACATTCGATGAGCGG
GGTCGGCAGCACCGGCAGCAACGTGCTGCTGATCGTGGCCTCGCTCCTGG
TGATCAAGGGGCTTCTTCTGCCCGAGAACATTCGGCACCTCGGCTTTTGC
CCCGATGAAGATCCCATCAGGGGCAAGGATACGCTCCCGTGGAGGATGAT
GATAGAGTCCGGCAGGGAATGCGGCTCTGTTTCCGAGGCACCTCGGCTTT
TGCCCCGATGAAGATCCCATCAGGGGCAAGGATACGCTCCCGTGGAGGAT
GATGATAGAGTCCGGCAGGGAATGCGGCTCTGTTTCCGAGGTGATGACGA
AGTACATCACTGCACCGCTCGCATTTCCGGGCACGCCAGAGTGGGGAATG
ATGCTCAACGTCAAAGAGGATCTGGCGAAAGACGCATGGTTGCAGTAGGT
GATGACGAAGTACATCACTGCACCGCTCGCATTTCCGGGCACGCCAGAGT
GGGGAATGATGCTCAACGTCAAAGAGGATCTGGCGAAAGACGCATGGTTG
CAGTAG
back to top