mRNA_L-elsbetiae_contig7923.16882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7923.16882.1
Unique NamemRNA_L-elsbetiae_contig7923.16882.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7923.16882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7923contigL-elsbetiae_contig7923:1570..4487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons3
Model size354
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7923.16882.1prot_L-elsbetiae_contig7923.16882.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7923 1612..4487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.7605183-UTR-L-elsbetiae_contig7923:1569..16111622816876.7605183-UTR-L-elsbetiae_contig7923:1569..1611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7923 1570..1611 +
1691683880.5527184-UTR-L-elsbetiae_contig7923:1569..16111691683880.5527184-UTR-L-elsbetiae_contig7923:1569..1611Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7923 1570..1611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816876.772162-CDS-L-elsbetiae_contig7923:1611..16601622816876.772162-CDS-L-elsbetiae_contig7923:1611..1660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 1612..1660 +
1691683880.5669696-CDS-L-elsbetiae_contig7923:1611..16601691683880.5669696-CDS-L-elsbetiae_contig7923:1611..1660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 1612..1660 +
1622816876.7828572-CDS-L-elsbetiae_contig7923:2761..28911622816876.7828572-CDS-L-elsbetiae_contig7923:2761..2891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 2762..2891 +
1691683880.5844684-CDS-L-elsbetiae_contig7923:2761..28911691683880.5844684-CDS-L-elsbetiae_contig7923:2761..2891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 2762..2891 +
1622816876.7941537-CDS-L-elsbetiae_contig7923:4354..44871622816876.7941537-CDS-L-elsbetiae_contig7923:4354..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 4355..4487 +
1691683880.5971007-CDS-L-elsbetiae_contig7923:4354..44871691683880.5971007-CDS-L-elsbetiae_contig7923:4354..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7923 4355..4487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7923.16882.1

>prot_L-elsbetiae_contig7923.16882.1 ID=prot_L-elsbetiae_contig7923.16882.1|Name=mRNA_L-elsbetiae_contig7923.16882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MRTFLAALGLGLAAVPGAVDAFVTPAGGGSIAATAASRDLSRSTLLASGH
ASASRTGCRRSEGTARASGFAEGAALRVPATGSAGGAVGAGTARRDTATA
LSAR
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mRNA from alignment at L-elsbetiae_contig7923:1570..4487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7923.16882.1 ID=mRNA_L-elsbetiae_contig7923.16882.1|Name=mRNA_L-elsbetiae_contig7923.16882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2918bp|location=Sequence derived from alignment at L-elsbetiae_contig7923:1570..4487+ (Laminarionema elsbetiae ELsaHSoW15)
AGACGCTGACGCCGGAGAGGTGATTGAGATTCGCCTGCTGATATGAGGAC
TTTCTTGGCAGCTCTCGGACTGGGCCTTGCTGCTGTGCCAGGTGTGTTCG
TGCACTCGGTCTTGAATCTTGAACATGCGTTTCTCTTGTACTACTACATA
CAATACAGGTCTCTCGCTCGGTTCGGCTTGCACATGATAGGCCGGTTTGG
CATCACCGCCGACCGTGATGGCGATGCCACAATGAGCAAGCTCTCTTCGT
GCTCAACAAACTGTGCGTGCGGTACGGAGCGAAAGCGTGTGGCCGGCGCG
GTCTGTCGTGGCGTGCTTGTCATCGTGGACTTTCTGTTCTATCGGTTTCA
GTATCTACATGGGTCTGGTGTCTACGTGTCTACCAACACTACCTACAATC
AATAGGCCAGGCCCACTCGCGACAGATTCAAGTTCGCTCTCCTCTCTCGC
AATGTCCCCCCCAGCCTATGATCAAGACTTAGACCACCAGGCGTGATATC
GTGCGGCGTGTCTAGGTTGGCAGCCGTTTTCCTTCCTCTCGTAATTTACC
TCTGTTGTGGGAACCCTATTATGGGTGCAGGCTGCATGAGACGGCACATG
TCTACCGTAGGTGACACAAGATACCACACCCCCTGGACAGATTTTCAAAG
CTCGATTCCTCCCCAGCAAGAAGAGTGACATTGCCGAAATGGGTGGCGTT
GGAAATATCTAGTCGAGCGCTGTCCGAAAATATGGCGTTTGGTGCTGGCA
CCTTCTTCGTTACGGAATTAGGGAGCTCTACAATTCTGTCCAGGGGGTGT
GGTATCTTATGTCACCTACGGTAGACGTCTAGACAACACATCTGTGGGAT
TTTCTGCACGTTTTTTACTTGACACGGCATTACTCTCTTGTTGTCTTGTT
TCGTGCTAAAATAGAGCACGGCTTGATAGATCTACTGCTGATGCTGCTGC
TGCTGCTGCTGCTGTAAGTCGTCCCTTTCAATACAACGTGTACGTGCTGT
CGATGGTTCCCCCGCCCGCCATGCGCTAGAGCTTGGGAGGCCCCCTTCCA
CGCACCCGCAGCTTACACGGCAAGCCCTCTTATAAGGTTGCACTACCTGT
GTCTAATCCTCTAGATGTCTGGTGTCTTAGACGCAATACTGCGATGCTGA
TCTGCGCCGCATGCACGCCCTCCGACCCCCCGCGGCACTCAGGTGCGGTG
GACGCCTTTGTTACCCCCGCTGGCGGCGGCTCAATTGCCGCGACTGCGGC
GTCGAGAGACCTCTCGCGCAGCACACTACTGGCGAGCGGCCATGCCTCGG
CGAGCCGCACTGGCTGCAGGAGGTATGCACGACGACAAGGGTGTTCTGGG
ATACGTGAGCACAGCCAGGCTTGCAGATGATCTGTTTCGGGGGGGGGGGA
CAAAAACAACAATCGCACCGGCGTCTGTTCGTTGGGTCGGCGCAGCGTCG
GCAGGACGGGCTTGTTGAAAACAAGCGATGTCCGTGCTCTTATGAGTCAT
ACATATGCATACGTGTACGTTGTGGTCCTAAGCAAAGCGTTCGCGGGGAT
GATGTAAATACTGCTGTTGTGGGTTTCAATGATCACGTTCATTCTCTTGT
GCTCTGTTCCCCAAGAGTGACGGTTGAGGTCACACGTCGGAGTGCTACCG
TGGTTGTTTGGATTGGATCTTTCCTATCTACTTGTACATGCCATGGGGTT
TGCATGAGGGGGGAGGCTGCCGAACTTGGCGTTCAAAAATCAAAGGGAGG
CCCCGCAAAGGGGCGTGGGTGCGAGTGCCTCAGGGGAGTAGAAGCTCTTC
TCTGCGACCACGGAACAGAGCTCTGGCACGATGAATGTCTCTCGAGCGCT
GTTTTATTAATAAGCGCTGGACAACAGTTGTAGCAGTTTCGATTCGCCCG
CTTACTACACAATGGTGACAATCTTGTGCTACGATTGGTCTTGTCCGACT
TCGGTTGGTCGTCTGCAGCGATCTTCCGATTCGCCCGCTTACTACCCAAC
AATGGCGATAATCTTGTGCTGAGACTACTCTGTAATTGTTGTCCAGCTTC
GGCCGGTCATCTGCAGCGGTCTTCCTCTCTTGTTTGTGAACAAATATGCT
GTGGATTGAGAAGCGCGAGCGAAGGGTATTGCAGGACATTTTGCGCCCGC
GCGCGTGTGTGTGCGGTAGTATGCTGTAAACGCATGGTAGTTCGGCGAAG
TCCCCCTCGCCCCCCCTCTTACAAGTATACGAAGTATAGGTGTACGTAGC
ATCACGTTTCCCCCCGAGGATAGAATCTCTTCCAACATTCATACTGCTGC
CCGGCCCCCCCACCGCATTACTCGGGGGCGACACCTGCCAGGATCGATCG
TTGGCGACGAAGTTGTCTTCACACCCTCCAATCTCGGAACATTGACGCTT
CCACACTTTTGTAGTCGCGCGTGCGCACATTTTATTGCAATAATTGATTT
TGAGTTTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTGTT
CTTCGCATTTATTTCAAGTGCTCGGCGGGGCGCTCCTTGCCACGAGGGAC
GTTTCGACAGAGCGCTGAACCATGGTCACACAGTAGTAGAAGCGTTCCTC
TCCCCGAGGCCCTCACTCCCACCCTCTGCGGTGCTTGCCTACAGCAGTAA
GGTTTTTATCGCGAGAAAAGGGTCGATACTTCAACTAGGTGTGCGCGTTC
AGATCACCTACACATGTACTATGTACCAAAAGTTGTACCGGGGTGTGCAG
AATCTCAAACCTCCAGAACGTAACGTTTTGCGCAGGTCGGAGGGAACAGC
GCGGGCGAGCGGCTTTGCCGAGGGTGCTGCTCTACGGGTCCCGGCGACGG
GTTCGGCGGGGGGGGCGGTAGGGGCGGGCACCGCCAGGAGAGATACGGCA
ACGGCACTCAGCGCTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7923:1570..4487+

>mRNA_L-elsbetiae_contig7923.16882.1 ID=mRNA_L-elsbetiae_contig7923.16882.1|Name=mRNA_L-elsbetiae_contig7923.16882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig7923:1570..4487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGACTTTCTTGGCAGCTCTCGGACTGGGCCTTGCTGCTGTGCCAGA
TGAGGACTTTCTTGGCAGCTCTCGGACTGGGCCTTGCTGCTGTGCCAGGT
GCGGTGGACGCCTTTGTTACCCCCGCTGGCGGCGGCTCAATTGCCGCGAC
TGCGGCGTCGAGAGACCTCTCGCGCAGCACACTACTGGCGAGCGGCCATG
CCTCGGCGAGCCGCACTGGCTGCAGGAGGTGCGGTGGACGCCTTTGTTAC
CCCCGCTGGCGGCGGCTCAATTGCCGCGACTGCGGCGTCGAGAGACCTCT
CGCGCAGCACACTACTGGCGAGCGGCCATGCCTCGGCGAGCCGCACTGGC
TGCAGGAGGTCGGAGGGAACAGCGCGGGCGAGCGGCTTTGCCGAGGGTGC
TGCTCTACGGGTCCCGGCGACGGGTTCGGCGGGGGGGGCGGTAGGGGCGG
GCACCGCCAGGAGAGATACGGCAACGGCACTCAGCGCTAGGGTCGGAGGG
AACAGCGCGGGCGAGCGGCTTTGCCGAGGGTGCTGCTCTACGGGTCCCGG
CGACGGGTTCGGCGGGGGGGGCGGTAGGGGCGGGCACCGCCAGGAGAGAT
ACGGCAACGGCACTCAGCGCTAGG
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